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F2J1N5 (F2J1N5_POLGS) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length415 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids By similarity. HAMAP-Rule MF_01201

Catalytic activity

L-alanine = D-alanine. HAMAP-Rule MF_01201 SAAS SAAS009006

Cofactor

Pyridoxal phosphate By similarity. HAMAP-Rule MF_01201 SAAS SAAS009006

Pathway

Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. HAMAP-Rule MF_01201

Sequence similarities

Belongs to the alanine racemase family. HAMAP-Rule MF_01201 RuleBase RU004188

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site781Proton acceptor; specific for D-alanine By similarity HAMAP-Rule MF_01201
Active site2981Proton acceptor; specific for L-alanine By similarity HAMAP-Rule MF_01201
Binding site1761Substrate By similarity HAMAP-Rule MF_01201
Binding site3511Substrate; via amide nitrogen By similarity HAMAP-Rule MF_01201

Amino acid modifications

Modified residue781N6-(pyridoxal phosphate)lysine By similarity HAMAP-Rule MF_01201

Sequences

Sequence LengthMass (Da)Tools
F2J1N5 [UniParc].

Last modified May 31, 2011. Version 1.
Checksum: E45EA3AD034CDE30

FASTA41544,238
        10         20         30         40         50         60 
MSRPQRLRIG YDWICLATAR DSPRFRTNAG AWVLPMSSVS PEALAGGVLT VDTAAIADNW 

        70         80         90        100        110        120 
RALAGQLGPG ARCAATVKAD AYGCGIPATV RALAASGCDT FFVALPAEGI AVREAAPGAT 

       130        140        150        160        170        180 
IYVLDGLFPG TAPAYAEARL RPVLGSLPEL EEWALFCRSR KVRLEAAVHV DTGMNRLGLT 

       190        200        210        220        230        240 
EQEAERLAGD RDLLDSFALA LVISHLACGA EPGHPLNRQQ LERFRTLSGH FPDAVRSLAN 

       250        260        270        280        290        300 
SAGIFLGADY HFDLVRPGIA LYGGKALDSF DNPMRPVARV EARILQLRTV RAGEGVGYGL 

       310        320        330        340        350        360 
AQTVRRDTRL AVVAAGYADG LLRRAGGSDD RPGGHGWIVG HRVPVFGRIS MDMQALDVTD 

       370        380        390        400        410 
VPAALLRRGA MVELIGPHVA ASELAAVADT IDYEYLTALG RRFHRRYAPL AEVAG 

« Hide

References

[1]"Complete genome sequence of Polymorphum gilvum SL003B-26A1T, a crude oil-degrading bacterium from oil-polluted saline soil."
Li S.G., Tang Y.Q., Nie Y., Cai M., Wu X.L.
J. Bacteriol. 193:2894-2895(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: LMG 25793 / CGMCC 1.9160 / SL003B-26A1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002568 Genomic DNA. Translation: ADZ70836.1.
RefSeqYP_004304138.1. NC_015259.1.

3D structure databases

ProteinModelPortalF2J1N5.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADZ70836; ADZ70836; SL003B_2411.
GeneID10419746.
KEGGpgv:SL003B_2411.
PATRIC47182797. VBIPolGil182274_2471.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01775.
OMATHIAEED.

Enzyme and pathway databases

BioCycPGIL991905:GJ0L-2449-MONOMER.
UniPathwayUPA00042; UER00497.

Family and domain databases

Gene3D2.40.37.10. 1 hit.
HAMAPMF_01201. Ala_racemase.
InterProIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
[Graphical view]
PfamPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSPR00992. ALARACEMASE.
SMARTSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMSSF50621. SSF50621. 1 hit.
TIGRFAMsTIGR00492. alr. 1 hit.
PROSITEPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF2J1N5_POLGS
AccessionPrimary (citable) accession number: F2J1N5
Entry history
Integrated into UniProtKB/TrEMBL: May 31, 2011
Last sequence update: May 31, 2011
Last modified: February 19, 2014
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)