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F2J1N5

- F2J1N5_POLGS

UniProt

F2J1N5 - F2J1N5_POLGS

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Protein

Alanine racemase

Gene

SL003B_2411

Organism
Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids.UniRule annotation

Catalytic activityi

L-alanine = D-alanine.UniRule annotationSAAS annotation

Cofactori

Pyridoxal phosphate.UniRule annotationSAAS annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei78 – 781Proton acceptor; specific for D-alanineUniRule annotation
Binding sitei176 – 1761SubstrateUniRule annotation
Active sitei298 – 2981Proton acceptor; specific for L-alanineUniRule annotation
Binding sitei351 – 3511Substrate; via amide nitrogenUniRule annotation

GO - Molecular functioni

  1. alanine racemase activity Source: UniProtKB-HAMAP
  2. pyridoxal phosphate binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. D-alanine biosynthetic process Source: UniProtKB-UniPathway
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationSAAS annotation

Keywords - Ligandi

Pyridoxal phosphateUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciPGIL991905:GJ0L-2449-MONOMER.
UniPathwayiUPA00042; UER00497.

Names & Taxonomyi

Protein namesi
Recommended name:
Alanine racemaseUniRule annotation (EC:5.1.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:SL003B_2411Imported
OrganismiPolymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1)Imported
Taxonomic identifieri991905 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaPolymorphum
ProteomesiUP000008130: Chromosome

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei78 – 781N6-(pyridoxal phosphate)lysineUniRule annotation

Structurei

3D structure databases

ProteinModelPortaliF2J1N5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the alanine racemase family.UniRule annotation

Phylogenomic databases

KOiK01775.
OMAiPSECAGV.

Family and domain databases

Gene3Di2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
HAMAPiMF_01201. Ala_racemase.
InterProiIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamiPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSiPR00992. ALARACEMASE.
SMARTiSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMiSSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsiTIGR00492. alr. 1 hit.
PROSITEiPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F2J1N5-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSRPQRLRIG YDWICLATAR DSPRFRTNAG AWVLPMSSVS PEALAGGVLT
60 70 80 90 100
VDTAAIADNW RALAGQLGPG ARCAATVKAD AYGCGIPATV RALAASGCDT
110 120 130 140 150
FFVALPAEGI AVREAAPGAT IYVLDGLFPG TAPAYAEARL RPVLGSLPEL
160 170 180 190 200
EEWALFCRSR KVRLEAAVHV DTGMNRLGLT EQEAERLAGD RDLLDSFALA
210 220 230 240 250
LVISHLACGA EPGHPLNRQQ LERFRTLSGH FPDAVRSLAN SAGIFLGADY
260 270 280 290 300
HFDLVRPGIA LYGGKALDSF DNPMRPVARV EARILQLRTV RAGEGVGYGL
310 320 330 340 350
AQTVRRDTRL AVVAAGYADG LLRRAGGSDD RPGGHGWIVG HRVPVFGRIS
360 370 380 390 400
MDMQALDVTD VPAALLRRGA MVELIGPHVA ASELAAVADT IDYEYLTALG
410
RRFHRRYAPL AEVAG
Length:415
Mass (Da):44,238
Last modified:May 31, 2011 - v1
Checksum:iE45EA3AD034CDE30
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002568 Genomic DNA. Translation: ADZ70836.1.
RefSeqiYP_004304138.1. NC_015259.1.

Genome annotation databases

EnsemblBacteriaiADZ70836; ADZ70836; SL003B_2411.
GeneIDi10419746.
KEGGipgv:SL003B_2411.
PATRICi47182797. VBIPolGil182274_2471.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002568 Genomic DNA. Translation: ADZ70836.1 .
RefSeqi YP_004304138.1. NC_015259.1.

3D structure databases

ProteinModelPortali F2J1N5.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADZ70836 ; ADZ70836 ; SL003B_2411 .
GeneIDi 10419746.
KEGGi pgv:SL003B_2411.
PATRICi 47182797. VBIPolGil182274_2471.

Phylogenomic databases

KOi K01775.
OMAi PSECAGV.

Enzyme and pathway databases

UniPathwayi UPA00042 ; UER00497 .
BioCyci PGIL991905:GJ0L-2449-MONOMER.

Family and domain databases

Gene3Di 2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
HAMAPi MF_01201. Ala_racemase.
InterProi IPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
IPR029066. PLP-binding_barrel.
[Graphical view ]
Pfami PF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view ]
PRINTSi PR00992. ALARACEMASE.
SMARTi SM01005. Ala_racemase_C. 1 hit.
[Graphical view ]
SUPFAMi SSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsi TIGR00492. alr. 1 hit.
PROSITEi PS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of Polymorphum gilvum SL003B-26A1T, a crude oil-degrading bacterium from oil-polluted saline soil."
    Li S.G., Tang Y.Q., Nie Y., Cai M., Wu X.L.
    J. Bacteriol. 193:2894-2895(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: LMG 25793 / CGMCC 1.9160 / SL003B-26A1Imported.

Entry informationi

Entry nameiF2J1N5_POLGS
AccessioniPrimary (citable) accession number: F2J1N5
Entry historyi
Integrated into UniProtKB/TrEMBL: May 31, 2011
Last sequence update: May 31, 2011
Last modified: October 29, 2014
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3