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F2J1N5

- F2J1N5_POLGS

UniProt

F2J1N5 - F2J1N5_POLGS

Protein

Alanine racemase

Gene

SL003B_2411

Organism
Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 25 (01 Oct 2014)
      Sequence version 1 (31 May 2011)
      Previous versions | rss
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    Functioni

    Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids.UniRule annotation

    Catalytic activityi

    L-alanine = D-alanine.UniRule annotationSAAS annotation

    Cofactori

    Pyridoxal phosphate.UniRule annotationSAAS annotation

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei78 – 781Proton acceptor; specific for D-alanineUniRule annotation
    Binding sitei176 – 1761SubstrateUniRule annotation
    Active sitei298 – 2981Proton acceptor; specific for L-alanineUniRule annotation
    Binding sitei351 – 3511Substrate; via amide nitrogenUniRule annotation

    GO - Molecular functioni

    1. alanine racemase activity Source: UniProtKB-HAMAP
    2. pyridoxal phosphate binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. D-alanine biosynthetic process Source: UniProtKB-UniPathway

    Keywords - Molecular functioni

    IsomeraseUniRule annotationSAAS annotation

    Keywords - Ligandi

    Pyridoxal phosphateUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciPGIL991905:GJ0L-2449-MONOMER.
    UniPathwayiUPA00042; UER00497.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Alanine racemaseUniRule annotation (EC:5.1.1.1UniRule annotation)
    Gene namesi
    Ordered Locus Names:SL003B_2411Imported
    OrganismiPolymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1)Imported
    Taxonomic identifieri991905 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaPolymorphum
    ProteomesiUP000008130: Chromosome

    PTM / Processingi

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei78 – 781N6-(pyridoxal phosphate)lysineUniRule annotation

    Structurei

    3D structure databases

    ProteinModelPortaliF2J1N5.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the alanine racemase family.UniRule annotation

    Phylogenomic databases

    KOiK01775.
    OMAiPSECAGV.

    Family and domain databases

    Gene3Di2.40.37.10. 1 hit.
    3.20.20.10. 1 hit.
    HAMAPiMF_01201. Ala_racemase.
    InterProiIPR000821. Ala_racemase.
    IPR009006. Ala_racemase/Decarboxylase_C.
    IPR011079. Ala_racemase_C.
    IPR001608. Ala_racemase_N.
    IPR020622. Ala_racemase_pyridoxalP-BS.
    IPR029066. PLP-binding_barrel.
    [Graphical view]
    PfamiPF00842. Ala_racemase_C. 1 hit.
    PF01168. Ala_racemase_N. 1 hit.
    [Graphical view]
    PRINTSiPR00992. ALARACEMASE.
    SMARTiSM01005. Ala_racemase_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF50621. SSF50621. 1 hit.
    SSF51419. SSF51419. 1 hit.
    TIGRFAMsiTIGR00492. alr. 1 hit.
    PROSITEiPS00395. ALANINE_RACEMASE. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F2J1N5-1 [UniParc]FASTAAdd to Basket

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    MSRPQRLRIG YDWICLATAR DSPRFRTNAG AWVLPMSSVS PEALAGGVLT    50
    VDTAAIADNW RALAGQLGPG ARCAATVKAD AYGCGIPATV RALAASGCDT 100
    FFVALPAEGI AVREAAPGAT IYVLDGLFPG TAPAYAEARL RPVLGSLPEL 150
    EEWALFCRSR KVRLEAAVHV DTGMNRLGLT EQEAERLAGD RDLLDSFALA 200
    LVISHLACGA EPGHPLNRQQ LERFRTLSGH FPDAVRSLAN SAGIFLGADY 250
    HFDLVRPGIA LYGGKALDSF DNPMRPVARV EARILQLRTV RAGEGVGYGL 300
    AQTVRRDTRL AVVAAGYADG LLRRAGGSDD RPGGHGWIVG HRVPVFGRIS 350
    MDMQALDVTD VPAALLRRGA MVELIGPHVA ASELAAVADT IDYEYLTALG 400
    RRFHRRYAPL AEVAG 415
    Length:415
    Mass (Da):44,238
    Last modified:May 31, 2011 - v1
    Checksum:iE45EA3AD034CDE30
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002568 Genomic DNA. Translation: ADZ70836.1.
    RefSeqiWP_013653151.1. NC_015259.1.
    YP_004304138.1. NC_015259.1.

    Genome annotation databases

    EnsemblBacteriaiADZ70836; ADZ70836; SL003B_2411.
    GeneIDi10419746.
    KEGGipgv:SL003B_2411.
    PATRICi47182797. VBIPolGil182274_2471.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002568 Genomic DNA. Translation: ADZ70836.1 .
    RefSeqi WP_013653151.1. NC_015259.1.
    YP_004304138.1. NC_015259.1.

    3D structure databases

    ProteinModelPortali F2J1N5.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADZ70836 ; ADZ70836 ; SL003B_2411 .
    GeneIDi 10419746.
    KEGGi pgv:SL003B_2411.
    PATRICi 47182797. VBIPolGil182274_2471.

    Phylogenomic databases

    KOi K01775.
    OMAi PSECAGV.

    Enzyme and pathway databases

    UniPathwayi UPA00042 ; UER00497 .
    BioCyci PGIL991905:GJ0L-2449-MONOMER.

    Family and domain databases

    Gene3Di 2.40.37.10. 1 hit.
    3.20.20.10. 1 hit.
    HAMAPi MF_01201. Ala_racemase.
    InterProi IPR000821. Ala_racemase.
    IPR009006. Ala_racemase/Decarboxylase_C.
    IPR011079. Ala_racemase_C.
    IPR001608. Ala_racemase_N.
    IPR020622. Ala_racemase_pyridoxalP-BS.
    IPR029066. PLP-binding_barrel.
    [Graphical view ]
    Pfami PF00842. Ala_racemase_C. 1 hit.
    PF01168. Ala_racemase_N. 1 hit.
    [Graphical view ]
    PRINTSi PR00992. ALARACEMASE.
    SMARTi SM01005. Ala_racemase_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50621. SSF50621. 1 hit.
    SSF51419. SSF51419. 1 hit.
    TIGRFAMsi TIGR00492. alr. 1 hit.
    PROSITEi PS00395. ALANINE_RACEMASE. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Polymorphum gilvum SL003B-26A1T, a crude oil-degrading bacterium from oil-polluted saline soil."
      Li S.G., Tang Y.Q., Nie Y., Cai M., Wu X.L.
      J. Bacteriol. 193:2894-2895(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: LMG 25793 / CGMCC 1.9160 / SL003B-26A1Imported.

    Entry informationi

    Entry nameiF2J1N5_POLGS
    AccessioniPrimary (citable) accession number: F2J1N5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 31, 2011
    Last sequence update: May 31, 2011
    Last modified: October 1, 2014
    This is version 25 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3