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F2J1N5

- F2J1N5_POLGS

UniProt

F2J1N5 - F2J1N5_POLGS

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Protein
Alanine racemase
Gene
SL003B_2411
Organism
Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1)
Status
Unreviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids By similarity.UniRule annotation

Catalytic activityi

L-alanine = D-alanine.UniRule annotationSAAS annotations

Cofactori

Pyridoxal phosphate By similarity.UniRule annotationSAAS annotations

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei78 – 781Proton acceptor; specific for D-alanine By similarityUniRule annotation
Binding sitei176 – 1761Substrate By similarityUniRule annotation
Active sitei298 – 2981Proton acceptor; specific for L-alanine By similarityUniRule annotation
Binding sitei351 – 3511Substrate; via amide nitrogen By similarityUniRule annotation

GO - Molecular functioni

  1. alanine racemase activity Source: UniProtKB-HAMAP
  2. pyridoxal phosphate binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. D-alanine biosynthetic process Source: UniProtKB-UniPathway
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationSAAS annotations

Keywords - Ligandi

Pyridoxal phosphateUniRule annotationSAAS annotations

Enzyme and pathway databases

BioCyciPGIL991905:GJ0L-2449-MONOMER.
UniPathwayiUPA00042; UER00497.

Names & Taxonomyi

Protein namesi
Recommended name:
Alanine racemaseUniRule annotation (EC:5.1.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:SL003B_2411Imported
OrganismiPolymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1)Imported
Taxonomic identifieri991905 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaPolymorphum
ProteomesiUP000008130: Chromosome

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei78 – 781N6-(pyridoxal phosphate)lysine By similarityUniRule annotation

Structurei

3D structure databases

ProteinModelPortaliF2J1N5.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

KOiK01775.
OMAiPSECAGV.

Family and domain databases

Gene3Di2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
HAMAPiMF_01201. Ala_racemase.
InterProiIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamiPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSiPR00992. ALARACEMASE.
SMARTiSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMiSSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsiTIGR00492. alr. 1 hit.
PROSITEiPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F2J1N5-1 [UniParc]FASTAAdd to Basket

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MSRPQRLRIG YDWICLATAR DSPRFRTNAG AWVLPMSSVS PEALAGGVLT    50
VDTAAIADNW RALAGQLGPG ARCAATVKAD AYGCGIPATV RALAASGCDT 100
FFVALPAEGI AVREAAPGAT IYVLDGLFPG TAPAYAEARL RPVLGSLPEL 150
EEWALFCRSR KVRLEAAVHV DTGMNRLGLT EQEAERLAGD RDLLDSFALA 200
LVISHLACGA EPGHPLNRQQ LERFRTLSGH FPDAVRSLAN SAGIFLGADY 250
HFDLVRPGIA LYGGKALDSF DNPMRPVARV EARILQLRTV RAGEGVGYGL 300
AQTVRRDTRL AVVAAGYADG LLRRAGGSDD RPGGHGWIVG HRVPVFGRIS 350
MDMQALDVTD VPAALLRRGA MVELIGPHVA ASELAAVADT IDYEYLTALG 400
RRFHRRYAPL AEVAG 415
Length:415
Mass (Da):44,238
Last modified:May 31, 2011 - v1
Checksum:iE45EA3AD034CDE30
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002568 Genomic DNA. Translation: ADZ70836.1.
RefSeqiWP_013653151.1. NC_015259.1.
YP_004304138.1. NC_015259.1.

Genome annotation databases

EnsemblBacteriaiADZ70836; ADZ70836; SL003B_2411.
GeneIDi10419746.
KEGGipgv:SL003B_2411.
PATRICi47182797. VBIPolGil182274_2471.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002568 Genomic DNA. Translation: ADZ70836.1 .
RefSeqi WP_013653151.1. NC_015259.1.
YP_004304138.1. NC_015259.1.

3D structure databases

ProteinModelPortali F2J1N5.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADZ70836 ; ADZ70836 ; SL003B_2411 .
GeneIDi 10419746.
KEGGi pgv:SL003B_2411.
PATRICi 47182797. VBIPolGil182274_2471.

Phylogenomic databases

KOi K01775.
OMAi PSECAGV.

Enzyme and pathway databases

UniPathwayi UPA00042 ; UER00497 .
BioCyci PGIL991905:GJ0L-2449-MONOMER.

Family and domain databases

Gene3Di 2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
HAMAPi MF_01201. Ala_racemase.
InterProi IPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
IPR029066. PLP-binding_barrel.
[Graphical view ]
Pfami PF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view ]
PRINTSi PR00992. ALARACEMASE.
SMARTi SM01005. Ala_racemase_C. 1 hit.
[Graphical view ]
SUPFAMi SSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsi TIGR00492. alr. 1 hit.
PROSITEi PS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of Polymorphum gilvum SL003B-26A1T, a crude oil-degrading bacterium from oil-polluted saline soil."
    Li S.G., Tang Y.Q., Nie Y., Cai M., Wu X.L.
    J. Bacteriol. 193:2894-2895(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: LMG 25793 / CGMCC 1.9160 / SL003B-26A1.

Entry informationi

Entry nameiF2J1N5_POLGS
AccessioniPrimary (citable) accession number: F2J1N5
Entry historyi
Integrated into UniProtKB/TrEMBL: May 31, 2011
Last sequence update: May 31, 2011
Last modified: September 3, 2014
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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