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Protein
Submitted name:

Ribulose bisphosphate carboxylase large chain

Gene

rbcL

Organism
Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciPGIL991905:GJ0L-1006-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Ribulose bisphosphate carboxylase large chainImported
Gene namesi
Name:rbcLImported
Ordered Locus Names:SL003B_0988Imported
OrganismiPolymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1)Imported
Taxonomic identifieri991905 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaPolymorphum
Proteomesi
  • UP000008130 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi991905.SL003B_0988.

Structurei

3D structure databases

ProteinModelPortaliF2IXT6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini26 – 146121RuBisCO_large_NInterPro annotationAdd
BLAST
Domaini156 – 463308RuBisCO_largeInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the RuBisCO large chain family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105DT1. Bacteria.
COG1850. LUCA.
KOiK01601.
OMAiFTQDWAS.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
HAMAPiMF_01338. RuBisCO_L_type1.
InterProiIPR020878. RuBisCo_large_chain_AS.
IPR020888. RuBisCO_lsu.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEiPS00157. RUBISCO_LARGE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F2IXT6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDAKMKEIKG KERYKAGVLK YAQMGYWDGD YEPKDTDVIA LFRITPQDGV
60 70 80 90 100
DPIEAAAAVA GESSTATWTV VWTDRLTACD SYRAKAYRVD PVPGTPGQYF
110 120 130 140 150
CYVAYDLILF EEGSIANLTA SIIGNVFSFK PLKAARLEDM RFPVAYVKTY
160 170 180 190 200
KGPPTGIVVE RERLDKFGKP LLGATTKPKL GLSGKNYGRV VYEGLKGGLD
210 220 230 240 250
FMKDDENINS QPFMHWRDRF LYCMEAVNKA SAETGEVKGH YLNITAGTME
260 270 280 290 300
EMYRRAELAK ELGSVIVMVD LIIGWTAIQS ISEWCRQNDM ILHMHRAGHG
310 320 330 340 350
TYTRQKNHGI SFRVIAKWLR LAGVDHLHCG TAVGKLEGDP LTVQGYYNVC
360 370 380 390 400
RETRNAVDLP RGIFFEQDWA DLRKVMPVAS GGIHAGQMHQ LLDLFGDDVV
410 420 430 440 450
LQFGGGTIGH PMGIQAGATA NRVALEAMVL ARNEGRDIVN EGPEILRAAA
460 470 480
KWCKPLEAAL DTWGSITFNY TSTDTSDFVP TPAVA
Length:485
Mass (Da):53,685
Last modified:May 31, 2011 - v1
Checksum:i192F2CD7DC6C2F56
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002568 Genomic DNA. Translation: ADZ69417.1.
RefSeqiWP_013651735.1. NC_015259.1.

Genome annotation databases

EnsemblBacteriaiADZ69417; ADZ69417; SL003B_0988.
KEGGipgv:SL003B_0988.
PATRICi47179816. VBIPolGil182274_1003.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002568 Genomic DNA. Translation: ADZ69417.1.
RefSeqiWP_013651735.1. NC_015259.1.

3D structure databases

ProteinModelPortaliF2IXT6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi991905.SL003B_0988.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADZ69417; ADZ69417; SL003B_0988.
KEGGipgv:SL003B_0988.
PATRICi47179816. VBIPolGil182274_1003.

Phylogenomic databases

eggNOGiENOG4105DT1. Bacteria.
COG1850. LUCA.
KOiK01601.
OMAiFTQDWAS.

Enzyme and pathway databases

BioCyciPGIL991905:GJ0L-1006-MONOMER.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
HAMAPiMF_01338. RuBisCO_L_type1.
InterProiIPR020878. RuBisCo_large_chain_AS.
IPR020888. RuBisCO_lsu.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEiPS00157. RUBISCO_LARGE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Polymorphum gilvum SL003B-26A1T, a crude oil-degrading bacterium from oil-polluted saline soil."
    Li S.G., Tang Y.Q., Nie Y., Cai M., Wu X.L.
    J. Bacteriol. 193:2894-2895(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: LMG 25793 / CGMCC 1.9160 / SL003B-26A1Imported.

Entry informationi

Entry nameiF2IXT6_POLGS
AccessioniPrimary (citable) accession number: F2IXT6
Entry historyi
Integrated into UniProtKB/TrEMBL: May 31, 2011
Last sequence update: May 31, 2011
Last modified: April 13, 2016
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.