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F2IXM8

- F2IXM8_POLGS

UniProt

F2IXM8 - F2IXM8_POLGS

Protein
Submitted name:

ATP dependent DNA ligase domain family protein

Gene

SL003B_3229

Organism
Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 15 (01 Oct 2014)
      Sequence version 1 (31 May 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPGIL991905:GJ0L-3273-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligase domain family proteinImported
    Gene namesi
    Ordered Locus Names:SL003B_3229Imported
    OrganismiPolymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1)Imported
    Taxonomic identifieri991905 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaPolymorphum
    ProteomesiUP000008130: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliF2IXM8.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.
    OMAiRVWLWSR.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F2IXM8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MHAFARLLDR LSFEPRRTAK EALLVDYFRT TPDPDRGYAL AALAGSLDFP    50
    HAKPALLKGL VTERVDPVLF GLSYDFVGDL SETIALMWTA PAGRPDDGAE 100
    PLALRDVVSG LRGAGRTQAP ALLSTWLDRL DEIGRWALLK LITGGLRVGV 150
    SARLAKTAVA RLGRLEPDDI EEIWNGLATP YAELFAWAEG RADRPRNVDP 200
    APFRPPMLAH PVNEEKDFAA LDAADFAAEW KWDGIRVQAA AGREPGGMHG 250
    RRLYSRSGED ISAAFPDLLD HLGFDAAIDG ELLVVRDGAV QPFSDLQKRL 300
    NRKSAGARII ADYPVAIRAY DLLAVDGEDL RSLPFHARRT RLERFVAELA 350
    SPRIDLSPLV PFDGWAELAT ARHEPGRLLG EADAAAVEGV MLKRRAAPYL 400
    PGRPKGEWFK WKRDPFLIDA VLMYAQRGHG KRSSFYSDYT FGVWRGAPDA 450
    RELVPVGKAY FGFTDEELRE IDRFVRANTQ NRFGPVREVV HTPERGLVVE 500
    VAFEGLNRSG RHKSGLAMRF PRISRLRWDK IPAEADRIDT LEALLSATRA 550
    Length:550
    Mass (Da):61,063
    Last modified:May 31, 2011 - v1
    Checksum:iBC44E7ACF1B35B98
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002568 Genomic DNA. Translation: ADZ71651.1.
    RefSeqiYP_004304955.1. NC_015259.1.

    Genome annotation databases

    EnsemblBacteriaiADZ71651; ADZ71651; SL003B_3229.
    GeneIDi10420561.
    KEGGipgv:SL003B_3229.
    PATRICi47184512. VBIPolGil182274_3320.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002568 Genomic DNA. Translation: ADZ71651.1 .
    RefSeqi YP_004304955.1. NC_015259.1.

    3D structure databases

    ProteinModelPortali F2IXM8.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADZ71651 ; ADZ71651 ; SL003B_3229 .
    GeneIDi 10420561.
    KEGGi pgv:SL003B_3229.
    PATRICi 47184512. VBIPolGil182274_3320.

    Phylogenomic databases

    KOi K01971.
    OMAi RVWLWSR.

    Enzyme and pathway databases

    BioCyci PGIL991905:GJ0L-3273-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Polymorphum gilvum SL003B-26A1T, a crude oil-degrading bacterium from oil-polluted saline soil."
      Li S.G., Tang Y.Q., Nie Y., Cai M., Wu X.L.
      J. Bacteriol. 193:2894-2895(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: LMG 25793 / CGMCC 1.9160 / SL003B-26A1Imported.

    Entry informationi

    Entry nameiF2IXM8_POLGS
    AccessioniPrimary (citable) accession number: F2IXM8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 31, 2011
    Last sequence update: May 31, 2011
    Last modified: October 1, 2014
    This is version 15 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3