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F2IXM8

- F2IXM8_POLGS

UniProt

F2IXM8 - F2IXM8_POLGS

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Protein
Submitted name:

ATP dependent DNA ligase domain family protein

Gene
SL003B_3229
Organism
Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPGIL991905:GJ0L-3273-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligase domain family proteinImported
Gene namesi
Ordered Locus Names:SL003B_3229Imported
OrganismiPolymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1)Imported
Taxonomic identifieri991905 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaPolymorphum
ProteomesiUP000008130: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF2IXM8.

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiRVWLWSR.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F2IXM8-1 [UniParc]FASTAAdd to Basket

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MHAFARLLDR LSFEPRRTAK EALLVDYFRT TPDPDRGYAL AALAGSLDFP    50
HAKPALLKGL VTERVDPVLF GLSYDFVGDL SETIALMWTA PAGRPDDGAE 100
PLALRDVVSG LRGAGRTQAP ALLSTWLDRL DEIGRWALLK LITGGLRVGV 150
SARLAKTAVA RLGRLEPDDI EEIWNGLATP YAELFAWAEG RADRPRNVDP 200
APFRPPMLAH PVNEEKDFAA LDAADFAAEW KWDGIRVQAA AGREPGGMHG 250
RRLYSRSGED ISAAFPDLLD HLGFDAAIDG ELLVVRDGAV QPFSDLQKRL 300
NRKSAGARII ADYPVAIRAY DLLAVDGEDL RSLPFHARRT RLERFVAELA 350
SPRIDLSPLV PFDGWAELAT ARHEPGRLLG EADAAAVEGV MLKRRAAPYL 400
PGRPKGEWFK WKRDPFLIDA VLMYAQRGHG KRSSFYSDYT FGVWRGAPDA 450
RELVPVGKAY FGFTDEELRE IDRFVRANTQ NRFGPVREVV HTPERGLVVE 500
VAFEGLNRSG RHKSGLAMRF PRISRLRWDK IPAEADRIDT LEALLSATRA 550
Length:550
Mass (Da):61,063
Last modified:May 31, 2011 - v1
Checksum:iBC44E7ACF1B35B98
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002568 Genomic DNA. Translation: ADZ71651.1.
RefSeqiYP_004304955.1. NC_015259.1.

Genome annotation databases

EnsemblBacteriaiADZ71651; ADZ71651; SL003B_3229.
GeneIDi10420561.
KEGGipgv:SL003B_3229.
PATRICi47184512. VBIPolGil182274_3320.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002568 Genomic DNA. Translation: ADZ71651.1 .
RefSeqi YP_004304955.1. NC_015259.1.

3D structure databases

ProteinModelPortali F2IXM8.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADZ71651 ; ADZ71651 ; SL003B_3229 .
GeneIDi 10420561.
KEGGi pgv:SL003B_3229.
PATRICi 47184512. VBIPolGil182274_3320.

Phylogenomic databases

KOi K01971.
OMAi RVWLWSR.

Enzyme and pathway databases

BioCyci PGIL991905:GJ0L-3273-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of Polymorphum gilvum SL003B-26A1T, a crude oil-degrading bacterium from oil-polluted saline soil."
    Li S.G., Tang Y.Q., Nie Y., Cai M., Wu X.L.
    J. Bacteriol. 193:2894-2895(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: LMG 25793 / CGMCC 1.9160 / SL003B-26A1.

Entry informationi

Entry nameiF2IXM8_POLGS
AccessioniPrimary (citable) accession number: F2IXM8
Entry historyi
Integrated into UniProtKB/TrEMBL: May 31, 2011
Last sequence update: May 31, 2011
Last modified: May 14, 2014
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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