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Protein
Submitted name:

ATP dependent DNA ligase domain family protein

Gene

SL003B_3229

Organism
Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPGIL991905:GJ0L-3273-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligase domain family proteinImported
Gene namesi
Ordered Locus Names:SL003B_3229Imported
OrganismiPolymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1)Imported
Taxonomic identifieri991905 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaPolymorphum
ProteomesiUP000008130: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF2IXM8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK10747.
OMAiGQPYPFF.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F2IXM8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHAFARLLDR LSFEPRRTAK EALLVDYFRT TPDPDRGYAL AALAGSLDFP
60 70 80 90 100
HAKPALLKGL VTERVDPVLF GLSYDFVGDL SETIALMWTA PAGRPDDGAE
110 120 130 140 150
PLALRDVVSG LRGAGRTQAP ALLSTWLDRL DEIGRWALLK LITGGLRVGV
160 170 180 190 200
SARLAKTAVA RLGRLEPDDI EEIWNGLATP YAELFAWAEG RADRPRNVDP
210 220 230 240 250
APFRPPMLAH PVNEEKDFAA LDAADFAAEW KWDGIRVQAA AGREPGGMHG
260 270 280 290 300
RRLYSRSGED ISAAFPDLLD HLGFDAAIDG ELLVVRDGAV QPFSDLQKRL
310 320 330 340 350
NRKSAGARII ADYPVAIRAY DLLAVDGEDL RSLPFHARRT RLERFVAELA
360 370 380 390 400
SPRIDLSPLV PFDGWAELAT ARHEPGRLLG EADAAAVEGV MLKRRAAPYL
410 420 430 440 450
PGRPKGEWFK WKRDPFLIDA VLMYAQRGHG KRSSFYSDYT FGVWRGAPDA
460 470 480 490 500
RELVPVGKAY FGFTDEELRE IDRFVRANTQ NRFGPVREVV HTPERGLVVE
510 520 530 540 550
VAFEGLNRSG RHKSGLAMRF PRISRLRWDK IPAEADRIDT LEALLSATRA
Length:550
Mass (Da):61,063
Last modified:May 31, 2011 - v1
Checksum:iBC44E7ACF1B35B98
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002568 Genomic DNA. Translation: ADZ71651.1.
RefSeqiYP_004304955.1. NC_015259.1.

Genome annotation databases

EnsemblBacteriaiADZ71651; ADZ71651; SL003B_3229.
GeneIDi10420561.
KEGGipgv:SL003B_3229.
PATRICi47184512. VBIPolGil182274_3320.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002568 Genomic DNA. Translation: ADZ71651.1.
RefSeqiYP_004304955.1. NC_015259.1.

3D structure databases

ProteinModelPortaliF2IXM8.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADZ71651; ADZ71651; SL003B_3229.
GeneIDi10420561.
KEGGipgv:SL003B_3229.
PATRICi47184512. VBIPolGil182274_3320.

Phylogenomic databases

KOiK10747.
OMAiGQPYPFF.

Enzyme and pathway databases

BioCyciPGIL991905:GJ0L-3273-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Polymorphum gilvum SL003B-26A1T, a crude oil-degrading bacterium from oil-polluted saline soil."
    Li S.G., Tang Y.Q., Nie Y., Cai M., Wu X.L.
    J. Bacteriol. 193:2894-2895(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: LMG 25793 / CGMCC 1.9160 / SL003B-26A1Imported.

Entry informationi

Entry nameiF2IXM8_POLGS
AccessioniPrimary (citable) accession number: F2IXM8
Entry historyi
Integrated into UniProtKB/TrEMBL: May 31, 2011
Last sequence update: May 31, 2011
Last modified: March 4, 2015
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.