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F2IXM8 (F2IXM8_POLGS) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 13. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:SL003B_3229 EMBL ADZ71651.1
OrganismPolymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) [Complete proteome] [HAMAP] EMBL ADZ71651.1
Taxonomic identifier991905 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaPolymorphum

Protein attributes

Sequence length550 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
F2IXM8 [UniParc].

Last modified May 31, 2011. Version 1.
Checksum: BC44E7ACF1B35B98

FASTA55061,063
        10         20         30         40         50         60 
MHAFARLLDR LSFEPRRTAK EALLVDYFRT TPDPDRGYAL AALAGSLDFP HAKPALLKGL 

        70         80         90        100        110        120 
VTERVDPVLF GLSYDFVGDL SETIALMWTA PAGRPDDGAE PLALRDVVSG LRGAGRTQAP 

       130        140        150        160        170        180 
ALLSTWLDRL DEIGRWALLK LITGGLRVGV SARLAKTAVA RLGRLEPDDI EEIWNGLATP 

       190        200        210        220        230        240 
YAELFAWAEG RADRPRNVDP APFRPPMLAH PVNEEKDFAA LDAADFAAEW KWDGIRVQAA 

       250        260        270        280        290        300 
AGREPGGMHG RRLYSRSGED ISAAFPDLLD HLGFDAAIDG ELLVVRDGAV QPFSDLQKRL 

       310        320        330        340        350        360 
NRKSAGARII ADYPVAIRAY DLLAVDGEDL RSLPFHARRT RLERFVAELA SPRIDLSPLV 

       370        380        390        400        410        420 
PFDGWAELAT ARHEPGRLLG EADAAAVEGV MLKRRAAPYL PGRPKGEWFK WKRDPFLIDA 

       430        440        450        460        470        480 
VLMYAQRGHG KRSSFYSDYT FGVWRGAPDA RELVPVGKAY FGFTDEELRE IDRFVRANTQ 

       490        500        510        520        530        540 
NRFGPVREVV HTPERGLVVE VAFEGLNRSG RHKSGLAMRF PRISRLRWDK IPAEADRIDT 

       550 
LEALLSATRA 

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References

[1]"Complete genome sequence of Polymorphum gilvum SL003B-26A1T, a crude oil-degrading bacterium from oil-polluted saline soil."
Li S.G., Tang Y.Q., Nie Y., Cai M., Wu X.L.
J. Bacteriol. 193:2894-2895(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: LMG 25793 / CGMCC 1.9160 / SL003B-26A1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002568 Genomic DNA. Translation: ADZ71651.1.
RefSeqYP_004304955.1. NC_015259.1.

3D structure databases

ProteinModelPortalF2IXM8.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADZ71651; ADZ71651; SL003B_3229.
GeneID10420561.
KEGGpgv:SL003B_3229.
PATRIC47184512. VBIPolGil182274_3320.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.
OMAGQPYPFF.

Enzyme and pathway databases

BioCycPGIL991905:GJ0L-3273-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF2IXM8_POLGS
AccessionPrimary (citable) accession number: F2IXM8
Entry history
Integrated into UniProtKB/TrEMBL: May 31, 2011
Last sequence update: May 31, 2011
Last modified: October 16, 2013
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)