F2IXM8 (F2IXM8_POLGS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase domain family protein EMBL ADZ71651.1

Gene names

Ordered Locus Names:

SL003B_3229 EMBL ADZ71651.1

Organism

Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) [Complete proteome] [HAMAP]

Taxonomic identifier

991905 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › unclassified Alphaproteobacteria › Polymorphum › Polymorphum gilvum

Protein attributes

Sequence length	550 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ADZ71651.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F2IXM8 [UniParc]. Last modified May 31, 2011. Version 1. Checksum: BC44E7ACF1B35B98	FASTA	550	61,063
	10 20 30 40 50 60 MHAFARLLDR LSFEPRRTAK EALLVDYFRT TPDPDRGYAL AALAGSLDFP HAKPALLKGL 70 80 90 100 110 120 VTERVDPVLF GLSYDFVGDL SETIALMWTA PAGRPDDGAE PLALRDVVSG LRGAGRTQAP 130 140 150 160 170 180 ALLSTWLDRL DEIGRWALLK LITGGLRVGV SARLAKTAVA RLGRLEPDDI EEIWNGLATP 190 200 210 220 230 240 YAELFAWAEG RADRPRNVDP APFRPPMLAH PVNEEKDFAA LDAADFAAEW KWDGIRVQAA 250 260 270 280 290 300 AGREPGGMHG RRLYSRSGED ISAAFPDLLD HLGFDAAIDG ELLVVRDGAV QPFSDLQKRL 310 320 330 340 350 360 NRKSAGARII ADYPVAIRAY DLLAVDGEDL RSLPFHARRT RLERFVAELA SPRIDLSPLV 370 380 390 400 410 420 PFDGWAELAT ARHEPGRLLG EADAAAVEGV MLKRRAAPYL PGRPKGEWFK WKRDPFLIDA 430 440 450 460 470 480 VLMYAQRGHG KRSSFYSDYT FGVWRGAPDA RELVPVGKAY FGFTDEELRE IDRFVRANTQ 490 500 510 520 530 540 NRFGPVREVV HTPERGLVVE VAFEGLNRSG RHKSGLAMRF PRISRLRWDK IPAEADRIDT 550 LEALLSATRA

References

[1]

"Complete genome sequence of Polymorphum gilvum SL003B-26A1T, a crude oil-degrading bacterium from oil-polluted saline soil." Li S.G., Tang Y.Q., Nie Y., Cai M., Wu X.L. J. Bacteriol. 193:2894-2895(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: LMG 25793 / CGMCC 1.9160 / SL003B-26A1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002568 Genomic DNA. Translation: ADZ71651.1.
RefSeq	YP_004304955.1. NC_015259.1.
3D structure databases
ProteinModelPortal	F2IXM8.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADZ71651; ADZ71651; SL003B_3229.
GeneID	10420561.
KEGG	pgv:SL003B_3229.
PATRIC	47184512. VBIPolGil182274_3320.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Enzyme and pathway databases
BioCyc	PGIL991905:GJ0L-3273-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F2IXM8_POLGS

Accession

Primary (citable) accession number: F2IXM8

Entry history

Integrated into UniProtKB/TrEMBL:	May 31, 2011
Last sequence update:	May 31, 2011
Last modified:	April 3, 2013
This is version 12 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)