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F2ISX4 (F2ISX4_VIBCL) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
ORF Names:VCLMA_B0633 EMBL AEA80261.1
OrganismVibrio cholerae LMA3984-4 [Complete proteome] EMBL AEA80261.1
Taxonomic identifier935297 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio

Protein attributes

Sequence length690 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
F2ISX4 [UniParc].

Last modified May 31, 2011. Version 1.
Checksum: A1B1E0C1C8B7A844

FASTA69077,259
        10         20         30         40         50         60 
MKLNALTLSL LSALALPALA SSASTANLTV ATTTNSRDFP LQADEPLVIP LTKGDYTLTI 

        70         80         90        100        110        120 
SGIGGDCPPA PEQEIKFNTP IALNCHVPTQ LPLSVRFTGD YAFQWQAQNN TLTFVRQTTK 

       130        140        150        160        170        180 
AAKTEFRRPI PNVSCEVYQG GEVTLDLASS FADGTELQDA MTGQVVTVEQ GKVRLTPSAN 

       190        200        210        220        230        240 
SGGLVLLEPK QTAKAEPKQP FTYRNANIYF VMVDRFYNAD PSNDGSYGRH KDGQEEIGTF 

       250        260        270        280        290        300 
HGGDLKGVIA KLDHIQSLGT DAIWLSPIVE QVHGFVGGGE KGSFPFYAYH GYWTRDFTKI 

       310        320        330        340        350        360 
DANFGKDEDL QTLVREAHRR GIKILMDAVI NHAGYATLAD LQQDAVQVVN APMLPERWND 

       370        380        390        400        410        420 
WKPSADENWH SFHQAIDYQS KNWQQWWGPD WVRAGLPGYP APGSSDITMN LAGLPDFRTE 

       430        440        450        460        470        480 
STQAVTPPQW LLNNPGTRVV SKPNYTVADY LIEWQSDWVR RFGIDGFRID TVKHVEGEVW 

       490        500        510        520        530        540 
QRLKQRATES LAAWRKDNNQ SGEPFWMMGE VWGHAAYRSP YFDDGFDALI NFDIQKRMDN 

       550        560        570        580        590        600 
GAACLSQMAM VYRDYAQTLA KYPDFNPVSY MSSHDTELFF GRFKSLDMQR NAANALLLTP 

       610        620        630        640        650        660 
GAIQVYYGDE VAREAGPYAD DFHQGTRSDM PWEWNAERQA LLKHWQTLGQ FRQRHPAIGA 

       670        680        690 
GDHREIAQSN AYVFTRTLGE DKVVVAFVGR 

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References

[1]"Whole genome sequencing of environmental Vibrio cholerae O1 from 10 nanograms of DNA using short reads."
Perez Chaparro P.J., McCulloch J.A., Cerdeira L.T., Al-Dilaimi A., Canto de Sa L.L., de Oliveira R., Tauch A., de Carvalho Azevedo V.A., Cruz Schneider M.P., da Silva A.L.
J. Microbiol. Methods 87:208-212(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: LMA3984-4 EMBL AEA80261.1.
[2]Chaparro J., Cerdeira L., Al-Dilaimi A., Barbosa M.S., de Oliveira R.S., Ranieri A., Garcia B., Coimbra N., Sa L.L.C., Tauch A., Schneider M.P., McCulloch J., Silva A.
Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: LMA3984-4 EMBL AEA80261.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002556 Genomic DNA. Translation: AEA80261.1.
RefSeqYP_005632506.1. NC_017269.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEA80261; AEA80261; VCLMA_B0633.
GeneID12269702.
KEGGvcl:VCLMA_B0633.
PATRIC54236781. VBIVibCho179000_3315.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01176.

Enzyme and pathway databases

BioCycVCHO935297:GLMO-3215-MONOMER.

Family and domain databases

Gene3D3.20.20.80. 1 hit.
InterProIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 1 hit.
ProtoNetSearch...

Entry information

Entry nameF2ISX4_VIBCL
AccessionPrimary (citable) accession number: F2ISX4
Entry history
Integrated into UniProtKB/TrEMBL: May 31, 2011
Last sequence update: May 31, 2011
Last modified: July 9, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)