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F2ISG4 (F2ISG4_VIBCL) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
ORF Names:VCLMA_B0222 EMBL AEA79866.1
OrganismVibrio cholerae LMA3984-4 [Complete proteome] EMBL AEA79866.1
Taxonomic identifier935297 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio

Protein attributes

Sequence length466 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 13 family. RuleBase RU003615

Ontologies

Sequences

Sequence LengthMass (Da)Tools
F2ISG4 [UniParc].

Last modified May 31, 2011. Version 1.
Checksum: 84464872F6D634F7

FASTA46652,553
        10         20         30         40         50         60 
MKSSYLVLCA TFAAASFTSS VQAEAILHAF NWKYADVTAN AAQIAAAGYK KVLISPALKS 

        70         80         90        100        110        120 
SGNEWWARYQ PQDLRVIDSP LGNKTDLQTL IKTLQDYGVE VYADVVFNHM ANESWKRSDL 

       130        140        150        160        170        180 
NYPGSEVLAS YTNQAYYYQQ QKLFGDLSHN LFSQNDFHPE GCITDWGNPG HVQYWRLCGG 

       190        200        210        220        230        240 
AGDRGLPDLD ANAWVINQQR AYLQALKQMG IRGFRIDAVK HMSQYHIDQV FTPEIISGMH 

       250        260        270        280        290        300 
VFGEVITSGG QGDGSYDAFL APYLNNTTHA AYDFPLFASI RAAFSYQGSM SQLHDPQAYG 

       310        320        330        340        350        360 
QALPNARAIT FAITHDIPTN DGFRYQILNP QDEQLAYAYL LGKDGGTPLI YSDDLADHED 

       370        380        390        400        410        420 
KDNGRWANVW NQPSMQHMLR FHNAMQGKPM TVMYSDSCLL LFKRGKEGVV GINKCGESKN 

       430        440        450        460 
VTIDTYQHEF NWYQTYQDTL SDDRFSVSSR YHTLTIPARV ARMWML 

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References

[1]"Whole genome sequencing of environmental Vibrio cholerae O1 from 10 nanograms of DNA using short reads."
Perez Chaparro P.J., McCulloch J.A., Cerdeira L.T., Al-Dilaimi A., Canto de Sa L.L., de Oliveira R., Tauch A., de Carvalho Azevedo V.A., Cruz Schneider M.P., da Silva A.L.
J. Microbiol. Methods 87:208-212(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[2]Chaparro J., Cerdeira L., Al-Dilaimi A., Barbosa M.S., de Oliveira R.S., Ranieri A., Garcia B., Coimbra N., Sa L.L.C., Tauch A., Schneider M.P., McCulloch J., Silva A.
Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: LMA3984-4 EMBL AEA79866.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002556 Genomic DNA. Translation: AEA79866.1.
RefSeqYP_005632111.1. NC_017269.1.

3D structure databases

ProteinModelPortalF2ISG4.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEA79866; AEA79866; VCLMA_B0222.
GeneID12269288.
KEGGvcl:VCLMA_B0222.
PATRIC54235912. VBIVibCho179000_2893.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01176.

Enzyme and pathway databases

BioCycVCHO935297:GLMO-2801-MONOMER.

Family and domain databases

Gene3D3.20.20.80. 1 hit.
InterProIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSPR00110. ALPHAAMYLASE.
SUPFAMSSF51445. SSF51445. 1 hit.
ProtoNetSearch...

Entry information

Entry nameF2ISG4_VIBCL
AccessionPrimary (citable) accession number: F2ISG4
Entry history
Integrated into UniProtKB/TrEMBL: May 31, 2011
Last sequence update: May 31, 2011
Last modified: April 16, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)