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F2IM11 (F2IM11_VIBCL) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
ORF Names:VCLMA_A1545 EMBL AEA78761.1
OrganismVibrio cholerae LMA3984-4 [Complete proteome] EMBL AEA78761.1
Taxonomic identifier935297 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio

Protein attributes

Sequence length781 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Molecular_functionexo-alpha-sialidase activity

Inferred from electronic annotation. Source: InterPro

sialic acid binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F2IM11 [UniParc].

Last modified May 31, 2011. Version 1.
Checksum: 8452002280ACB762

FASTA78185,741
        10         20         30         40         50         60 
MRFKNVKKTA LMLAMFGMAT SSNAALFDYN ATGDTEFDSP AKQGWMQDNT NNGSGVLTNA 

        70         80         90        100        110        120 
DGMPAWLVQG NGGRAQWTYS LSTNQHAQAS SFGWRMTTEM KVLSGGMITN YYANGTQRVL 

       130        140        150        160        170        180 
PIISLDSSGN LVVEFEGQTG RTILATGTAA TEYHKFELVF LPGSNPSASF YFDGKLIRDN 

       190        200        210        220        230        240 
IQPTASKQNM IVWGNGSSNT DGVAAYRDIK FEIQGDVIFR GPDRIPSIVA SSVTPGVVTA 

       250        260        270        280        290        300 
FAEKRVGGGD PGALSNTNDI ITRTSRDGGI TWDTELNLTE QINVSDEFDF SDPRPIYDPS 

       310        320        330        340        350        360 
TNTVLVSYAR WPTDAAQNGD RIKPWMPNGI FYSVYDVASG NWRAPIDVTD QVKERSFQIA 

       370        380        390        400        410        420 
GWGGSELYRR NTNLNSQQDW QSNAKIRIVD GAANQIQVAD GGRKYVFTLS IDESGSLVAN 

       430        440        450        460        470        480 
LNGVSDPIIL QSERAKVHSF HDYELQYSAL NRSTTLFVDG QAITTWTGEV SQENNIQFGN 

       490        500        510        520        530        540 
ADAQIDGRLH VQNIALTQQG QNLVEFDAFY LAQQTPEVEK DLEKLGWTKI KTGNTMSLYG 

       550        560        570        580        590        600 
NASVNPGPGH GITLTRQQNI SGSQNGRLIY PAIVLDRFFL NVMSIYSDDG GSNWQTGSTL 

       610        620        630        640        650        660 
PIPFRWKSSS ILETLEPSEA DMVELQNGDL LLTARLDFNQ IVNGVNYSPR QQFLSKDGGI 

       670        680        690        700        710        720 
TWSLLEANNA NVFSNISTGT VDASITRFEQ SDGSHFLLFT NPQGNPAGTN GRQNLGLWFS 

       730        740        750        760        770        780 
FDEGVTWKGP IQLVNGASAY SDIYQLDSEN VIVIVETDNS NMRILRLPIT LLKQKLTLSQ 


N 

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References

[1]"Whole genome sequencing of environmental Vibrio cholerae O1 from 10 nanograms of DNA using short reads."
Perez Chaparro P.J., McCulloch J.A., Cerdeira L.T., Al-Dilaimi A., Canto de Sa L.L., de Oliveira R., Tauch A., de Carvalho Azevedo V.A., Cruz Schneider M.P., da Silva A.L.
J. Microbiol. Methods 87:208-212(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[2]Chaparro J., Cerdeira L., Al-Dilaimi A., Barbosa M.S., de Oliveira R.S., Ranieri A., Garcia B., Coimbra N., Sa L.L.C., Tauch A., Schneider M.P., McCulloch J., Silva A.
Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: LMA3984-4 EMBL AEA78761.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002555 Genomic DNA. Translation: AEA78761.1.
RefSeqYP_005634159.1. NC_017270.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEA78761; AEA78761; VCLMA_A1545.
GeneID12268817.
KEGGvcl:VCLMA_A1545.
PATRIC54233392. VBIVibCho179000_1704.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01186.

Enzyme and pathway databases

BioCycVCHO935297:GLMO-1615-MONOMER.

Family and domain databases

Gene3D2.120.10.10. 2 hits.
2.60.120.200. 2 hits.
InterProIPR008985. ConA-like_lec_gl_sf.
IPR013320. ConA-like_subgrp.
IPR026856. Sialidase_fam.
IPR011040. Sialidases.
IPR015344. VCNA_lectin-like_dom.
[Graphical view]
PANTHERPTHR10628. PTHR10628. 1 hit.
PfamPF09264. Sial-lect-inser. 2 hits.
[Graphical view]
SUPFAMSSF49899. SSF49899. 2 hits.
SSF50939. SSF50939. 2 hits.
ProtoNetSearch...

Entry information

Entry nameF2IM11_VIBCL
AccessionPrimary (citable) accession number: F2IM11
Entry history
Integrated into UniProtKB/TrEMBL: May 31, 2011
Last sequence update: May 31, 2011
Last modified: April 16, 2014
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)