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F2ILM1 (F2ILM1_VIBCL) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Elongation factor Tu HAMAP-Rule MF_00118

Short name=EF-Tu HAMAP-Rule MF_00118
Gene names
Name:tuf HAMAP-Rule MF_00118
ORF Names:VCLMA_A0280 EMBL AEA77594.1
OrganismVibrio cholerae LMA3984-4 [Complete proteome] EMBL AEA77594.1
Taxonomic identifier935297 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio

Protein attributes

Sequence length394 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. HAMAP-Rule MF_00118 RuleBase RU000325

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00118

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00118.

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. HAMAP-Rule MF_00118 RuleBase RU000325

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding19 – 268GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding81 – 855GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding136 – 1394GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence LengthMass (Da)Tools
F2ILM1 [UniParc].

Last modified May 31, 2011. Version 1.
Checksum: BF0DE31A00618B36

FASTA39443,126
        10         20         30         40         50         60 
MSKEKFERTK PHVNVGTIGH VDHGKTTLTA AICTVLAKVY GGKARDFASI DNAPEERERG 

        70         80         90        100        110        120 
ITINTSHVEY DTPNRHYAHV DCPGHADYVK NMITGAAQMD GGILVVAATD GPMPQTREHI 

       130        140        150        160        170        180 
LLGRQVGIPY IIVFMNKCDM VDDEELLELV EMEVRELLSE YDFPGDDLPV IQGSALGALN 

       190        200        210        220        230        240 
GEAQWEAKIV ELAEALDTYI PEPERAVDMA FLMPIEDVFS IQGRGTVVTG RIERGILKVG 

       250        260        270        280        290        300 
DEVAIVGIKE TVKTTCTGVE MFRKLLDEGR AGENVGALLR GTKREEVERG QVLAKPGSIT 

       310        320        330        340        350        360 
PHTKFESEVY VLSKDEGGRH TPFFKGYRPQ FYFRTTDVTG SIELPEGVEM VMPGDNVKMV 

       370        380        390 
VDLIAPIAMD EGLRFAIREG GRTVGAGVVA KIIA 

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References

[1]"Whole genome sequencing of environmental Vibrio cholerae O1 from 10 nanograms of DNA using short reads."
Perez Chaparro P.J., McCulloch J.A., Cerdeira L.T., Al-Dilaimi A., Canto de Sa L.L., de Oliveira R., Tauch A., de Carvalho Azevedo V.A., Cruz Schneider M.P., da Silva A.L.
J. Microbiol. Methods 87:208-212(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: LMA3984-4 EMBL AEA77594.1.
[2]Chaparro J., Cerdeira L., Al-Dilaimi A., Barbosa M.S., de Oliveira R.S., Ranieri A., Garcia B., Coimbra N., Sa L.L.C., Tauch A., Schneider M.P., McCulloch J., Silva A.
Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: LMA3984-4 EMBL AEA77594.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002555 Genomic DNA. Translation: AEA77594.1.
RefSeqYP_005632992.1. NC_017270.1.

3D structure databases

ProteinModelPortalF2ILM1.
SMRF2ILM1. Positions 4-394.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEF2ILM1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEA77594; AEA77594; VCLMA_A0280.
GeneID12267474.
KEGGvcl:VCLMA_A0280.
PATRIC54230352. VBIVibCho179000_0293.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK02358.

Enzyme and pathway databases

BioCycVCHO935297:GLMO-306-MONOMER.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
HAMAPMF_00118_B. EF_Tu_B.
InterProIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF2ILM1_VIBCL
AccessionPrimary (citable) accession number: F2ILM1
Entry history
Integrated into UniProtKB/TrEMBL: May 31, 2011
Last sequence update: May 31, 2011
Last modified: July 9, 2014
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)