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F2I1J9

- F2I1J9_PELSM

UniProt

F2I1J9 - F2I1J9_PELSM

Protein

Elongation factor Tu

Gene

tuf

Organism
Pelagibacter sp. (strain IMCC9063)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 22 (01 Oct 2014)
      Sequence version 1 (31 May 2011)
      Previous versions | rss
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    Functioni

    This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.UniRule annotation

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi19 – 268GTPUniRule annotation
    Nucleotide bindingi83 – 875GTPUniRule annotation
    Nucleotide bindingi138 – 1414GTPUniRule annotation

    GO - Molecular functioni

    1. GTPase activity Source: InterPro
    2. GTP binding Source: UniProtKB-HAMAP
    3. translation elongation factor activity Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Elongation factorUniRule annotationImported

    Keywords - Biological processi

    Protein biosynthesis

    Keywords - Ligandi

    GTP-bindingUniRule annotation, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciCPEL1002672:GHAA-1266-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Elongation factor TuUniRule annotation
    Short name:
    EF-TuUniRule annotation
    Gene namesi
    Name:tufUniRule annotation
    Ordered Locus Names:SAR11G3_01238Imported
    OrganismiPelagibacter sp. (strain IMCC9063)Imported
    Taxonomic identifieri1002672 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaSAR11 clusterCandidatus Pelagibacter
    ProteomesiUP000009181: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmUniRule annotation

    Interactioni

    Subunit structurei

    Monomer.UniRule annotation

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily.UniRule annotation
    Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.UniRule annotation

    Phylogenomic databases

    KOiK02358.

    Family and domain databases

    Gene3Di3.40.50.300. 1 hit.
    HAMAPiMF_00118_B. EF_Tu_B.
    InterProiIPR000795. EF_GTP-bd_dom.
    IPR027417. P-loop_NTPase.
    IPR005225. Small_GTP-bd_dom.
    IPR009000. Transl_B-barrel.
    IPR009001. Transl_elong_EF1A/Init_IF2_C.
    IPR004161. Transl_elong_EFTu/EF1A_2.
    IPR004541. Transl_elong_EFTu/EF1A_bac/org.
    IPR004160. Transl_elong_EFTu/EF1A_C.
    [Graphical view]
    PfamiPF00009. GTP_EFTU. 1 hit.
    PF03144. GTP_EFTU_D2. 1 hit.
    PF03143. GTP_EFTU_D3. 1 hit.
    [Graphical view]
    PRINTSiPR00315. ELONGATNFCT.
    SUPFAMiSSF50447. SSF50447. 1 hit.
    SSF50465. SSF50465. 1 hit.
    SSF52540. SSF52540. 1 hit.
    TIGRFAMsiTIGR00485. EF-Tu. 1 hit.
    TIGR00231. small_GTP. 1 hit.
    PROSITEiPS00301. EFACTOR_GTP. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F2I1J9-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSKEKFNRSK PHCNIGTIGH VDHGKTTLTA AITKVLSTAE GSSATFSAYD    50
    QIDKSPEEKE RGITISTAHV EYETPARHYA HVDCPGHADY VKNMITGAAQ 100
    MDGAILVVNA ADGPMPQTRE HILLARQVGV PSLVVFLNKC DTVDDKELLE 150
    LVEMEIRELL TSYKYPGDTI PIIKGSALKA LEGDAEMGIK PILELMKAVD 200
    ETIPQPARPI EKPFLMPIED VFSISGRGTV VTGRIELGQV KTGEEIEIIG 250
    IKETQKSVCT GVEMFRKLLD SGEAGDNVGI LLRGIERDQV ERGQVLAKPG 300
    SIKPHTKFEA QAYILKKEEG GRHTPFFTKY RPQFYFRTTD VTGEVTLPEG 350
    TEMIMPGDDA KMTVTLINPI AMDENLKFAI REGGRTVGAG VVTKVIE 397
    Length:397
    Mass (Da):43,461
    Last modified:May 31, 2011 - v1
    Checksum:i421B0A6F54444436
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002511 Genomic DNA. Translation: AEA81713.1.
    RefSeqiWP_013695878.1. NC_015380.1.
    YP_004358452.1. NC_015380.1.

    Genome annotation databases

    EnsemblBacteriaiAEA81713; AEA81713; SAR11G3_01238.
    GeneIDi10476252.
    KEGGipel:SAR11G3_01238.
    PATRICi54522083. VBICanPel201843_1227.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002511 Genomic DNA. Translation: AEA81713.1 .
    RefSeqi WP_013695878.1. NC_015380.1.
    YP_004358452.1. NC_015380.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEA81713 ; AEA81713 ; SAR11G3_01238 .
    GeneIDi 10476252.
    KEGGi pel:SAR11G3_01238.
    PATRICi 54522083. VBICanPel201843_1227.

    Phylogenomic databases

    KOi K02358.

    Enzyme and pathway databases

    BioCyci CPEL1002672:GHAA-1266-MONOMER.

    Family and domain databases

    Gene3Di 3.40.50.300. 1 hit.
    HAMAPi MF_00118_B. EF_Tu_B.
    InterProi IPR000795. EF_GTP-bd_dom.
    IPR027417. P-loop_NTPase.
    IPR005225. Small_GTP-bd_dom.
    IPR009000. Transl_B-barrel.
    IPR009001. Transl_elong_EF1A/Init_IF2_C.
    IPR004161. Transl_elong_EFTu/EF1A_2.
    IPR004541. Transl_elong_EFTu/EF1A_bac/org.
    IPR004160. Transl_elong_EFTu/EF1A_C.
    [Graphical view ]
    Pfami PF00009. GTP_EFTU. 1 hit.
    PF03144. GTP_EFTU_D2. 1 hit.
    PF03143. GTP_EFTU_D3. 1 hit.
    [Graphical view ]
    PRINTSi PR00315. ELONGATNFCT.
    SUPFAMi SSF50447. SSF50447. 1 hit.
    SSF50465. SSF50465. 1 hit.
    SSF52540. SSF52540. 1 hit.
    TIGRFAMsi TIGR00485. EF-Tu. 1 hit.
    TIGR00231. small_GTP. 1 hit.
    PROSITEi PS00301. EFACTOR_GTP. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of strain IMCC9063, belonging to SAR11 subgroup 3, isolated from the Arctic Ocean."
      Oh H.M., Kang I., Lee K., Jang Y., Lim S.I., Cho J.C.
      J. Bacteriol. 193:3379-3380(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: IMCC9063Imported.

    Entry informationi

    Entry nameiF2I1J9_PELSM
    AccessioniPrimary (citable) accession number: F2I1J9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 31, 2011
    Last sequence update: May 31, 2011
    Last modified: October 1, 2014
    This is version 22 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3