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Protein
Submitted name:

Glutamate decarboxylase

Gene

MADE_1018450

Organism
Alteromonas macleodii (strain DSM 17117 / Deep ecotype)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotation

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciAMAC314275:GHA7-3529-MONOMER.
AMAC314275:GHA7-3722-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Glutamate decarboxylaseImported
Gene namesi
Ordered Locus Names:MADE_1018450Imported
OrganismiAlteromonas macleodii (strain DSM 17117 / Deep ecotype)Imported
Taxonomic identifieri314275 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeAlteromonas
ProteomesiUP000001870 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi314275.MADE_1018450.

Structurei

3D structure databases

ProteinModelPortaliF2G682.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

KOiK01580.
OMAiALGAFCS.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.

Sequencei

Sequence statusi: Complete.

F2G682-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGEAQVSLEH LFRVFTKPEH KDSKLAQIEQ HLSDNILDFL SQHVVTKKTS
60 70 80 90 100
LEEIEKDFSD SKVPESPEFV STHAESLLDK LVAHSVNTYS PTFIGHMTSA
110 120 130 140 150
LPYFHLPLSK LMVGLNQNLV KIETSKAFTP LERQVLGMMH NLVYDQPQRF
160 170 180 190 200
YDNHLHSAAH SLGAFCSGGT IANITALWVA RNKLLGPQDG FCGVAKAGLA
210 220 230 240 250
AAYRHLDINN LGVMCSKRGH YSLSKAVDVL GLGRDQLLTI PAPRQTLDPA
260 270 280 290 300
KALRIGKRYQ EEGNKLLAIV GVGGTTETGH VDPLDELADV ANELGCWFHV
310 320 330 340 350
DAAWGGATLF SSRYRDRLKG IERADSVTID AHKQMYVPMG AGMALFKDPQ
360 370 380 390 400
NANAVRHHAQ YILRAGSKDL GATTLEGSRN GMAMMVYSAL HIFGRKGYEL
410 420 430 440 450
LIDRSIDKAK DFSHMIDKAG DFELTTTPTL SLLTYRVCPE EVQEKLKHAD
460 470 480 490 500
ANMRNAINEK VDALVVAVQK QQREAGKSFV SRTRLEAPDY PSQCITVFRV
510 520 530 540
VLANPLTSHN DLAAILAEQH LIAKETQAWA ELMNFVRDSE KVAS
Length:544
Mass (Da):60,135
Last modified:May 31, 2011 - v1
Checksum:i946C502265C4F213
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001103 Genomic DNA. Translation: AEA99814.1.
RefSeqiWP_012519843.1. NC_011138.3.
YP_004428812.1. NC_011138.3.

Genome annotation databases

EnsemblBacteriaiAEA99814; AEA99814; MADE_1018450.
GeneIDi10559036.
KEGGiamc:MADE_1018450.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001103 Genomic DNA. Translation: AEA99814.1.
RefSeqiWP_012519843.1. NC_011138.3.
YP_004428812.1. NC_011138.3.

3D structure databases

ProteinModelPortaliF2G682.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi314275.MADE_1018450.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEA99814; AEA99814; MADE_1018450.
GeneIDi10559036.
KEGGiamc:MADE_1018450.

Phylogenomic databases

KOiK01580.
OMAiALGAFCS.

Enzyme and pathway databases

BioCyciAMAC314275:GHA7-3529-MONOMER.
AMAC314275:GHA7-3722-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter."
    Ivars-Martinez E., Martin-Cuadrado A.-B., D'Auria G., Mira A., Ferriera S., Johnson J., Friedman R., Rodriguez-Valera F.
    ISME J. 2:1194-1212(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 17117 / Deep ecotypeImported.

Entry informationi

Entry nameiF2G682_ALTMD
AccessioniPrimary (citable) accession number: F2G682
Entry historyi
Integrated into UniProtKB/TrEMBL: May 31, 2011
Last sequence update: May 31, 2011
Last modified: June 24, 2015
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.