F2G682 (F2G682_ALTMD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Glutamate decarboxylase putative EMBL AEA99621.1

Gene names

Ordered Locus Names:

MADE_1017485, MADE_1018450

Organism

Alteromonas macleodii (strain DSM 17117 / Deep ecotype) [Complete proteome] [HAMAP] EMBL AEA99621.1

Taxonomic identifier

314275 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Alteromonadaceae › Alteromonas › Alteromonas macleodii

Protein attributes

Sequence length	544 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000382
Sequence similarities	Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000382
Molecular function	Lyase RuleBase RU000382
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	carboxylic acid metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	carboxy-lyase activity Inferred from electronic annotation. Source: InterPro pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F2G682 [UniParc]. Last modified May 31, 2011. Version 1. Checksum: 946C502265C4F213	FASTA	544	60,135
	10 20 30 40 50 60 MGEAQVSLEH LFRVFTKPEH KDSKLAQIEQ HLSDNILDFL SQHVVTKKTS LEEIEKDFSD 70 80 90 100 110 120 SKVPESPEFV STHAESLLDK LVAHSVNTYS PTFIGHMTSA LPYFHLPLSK LMVGLNQNLV 130 140 150 160 170 180 KIETSKAFTP LERQVLGMMH NLVYDQPQRF YDNHLHSAAH SLGAFCSGGT IANITALWVA 190 200 210 220 230 240 RNKLLGPQDG FCGVAKAGLA AAYRHLDINN LGVMCSKRGH YSLSKAVDVL GLGRDQLLTI 250 260 270 280 290 300 PAPRQTLDPA KALRIGKRYQ EEGNKLLAIV GVGGTTETGH VDPLDELADV ANELGCWFHV 310 320 330 340 350 360 DAAWGGATLF SSRYRDRLKG IERADSVTID AHKQMYVPMG AGMALFKDPQ NANAVRHHAQ 370 380 390 400 410 420 YILRAGSKDL GATTLEGSRN GMAMMVYSAL HIFGRKGYEL LIDRSIDKAK DFSHMIDKAG 430 440 450 460 470 480 DFELTTTPTL SLLTYRVCPE EVQEKLKHAD ANMRNAINEK VDALVVAVQK QQREAGKSFV 490 500 510 520 530 540 SRTRLEAPDY PSQCITVFRV VLANPLTSHN DLAAILAEQH LIAKETQAWA ELMNFVRDSE KVAS

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter." Ivars-Martinez E., Martin-Cuadrado A.B., D'Auria G., Mira A., Ferriera S., Johnson J., Friedman R., Rodriguez-Valera F. ISME J. 2:1194-1212(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 'Deep ecotype' and DSM 17117 / Deep ecotype.
[2]	Ivars-Martinez E., Martin-Cuadrado A.B., D'Auria G., Mira A., Ferriera S., Johnson J., Friedman R., Rodriguez-Valera F. Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: 'Deep ecotype'.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001103 Genomic DNA. Translation: AEA99621.1. CP001103 Genomic DNA. Translation: AEA99814.1.
RefSeq	YP_004428619.1. NC_011138.2. YP_004428812.1. NC_011138.2.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEA99621; AEA99621; MADE_1017485. AEA99814; AEA99814; MADE_1018450.
GeneID	10558843. 10559036.
KEGG	amc:MADE_1017485. amc:MADE_1018450.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01580.
OMA	CHFHVDA.
Enzyme and pathway databases
BioCyc	AMAC314275:GHA7-3529-MONOMER. AMAC314275:GHA7-3722-MONOMER.
Family and domain databases
Gene3D	3.40.640.10. 1 hit. 3.90.1150.10. 1 hit.
InterPro	IPR022517. Asp_decarboxylase_pyridox. IPR002129. PyrdxlP-dep_de-COase. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
Pfam	PF00282. Pyridoxal_deC. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNet	Search...

Entry information

Entry name

F2G682_ALTMD

Accession

Primary (citable) accession number: F2G682

Entry history

Integrated into UniProtKB/TrEMBL:	May 31, 2011
Last sequence update:	May 31, 2011
Last modified:	April 3, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)