Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Predicted eukaryotic-type DNA primase

Gene

SSIL_2188

Organism
Solibacillus silvestris (strain StLB046) (Bacillus silvestris)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Predicted eukaryotic-type DNA primaseImported
Gene namesi
Ordered Locus Names:SSIL_2188Imported
OrganismiSolibacillus silvestris (strain StLB046) (Bacillus silvestris)Imported
Taxonomic identifieri1002809 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesPlanococcaceaeSolibacillus
ProteomesiUP000006691: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF2F5S8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F2F5S8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKPMLLTDVP DIPLGDDWLY EAKYDGYRCI LVWDKGKNIP EMKSRNGNVL
60 70 80 90 100
NEKFPEIIRF CKSIYAEIEP YLPLIFDGEI VYLINHFQSK FSFVQKRGKM
110 120 130 140 150
TNQKNIESNA KTFPCHYIVF DLLKLKGKDK GNSRLTTRKQ LLSDLFERLN
160 170 180 190 200
LLDTVQYNDP KRLQAIDVFE DPHLIWQKVT SHNGEGIIAK KRSSKWLENT
210 220 230 240 250
RTKSWQKIKN WKHVNVILTK FDQLNGFFNG AIYQEDMLME VVSFKHGLSE
260 270 280 290 300
EESKTLIAFF KSKGTVKEKS IFEIPPSICV TVACIDFDGS KLREPRFHSF
310 320 330 340 350
QHHLDVTECN WQQMQRQLNP IPESVIVTHP DKPVFPASHI TKDDYLYYLQ
360 370 380 390 400
TVAPMMMPFL QDRLLTVIRY PHGVPGESFY QKNYIENLPE FITTQLVDDT
410 420 430 440 450
HFILCNNLES LLWLGNQLAL EFHIPFQPVT SEQPTEIVFD LDPPSVHEFG
460 470 480 490 500
LAVDAAVKFK TIMDYFKLTS FIKTSGGKGM QIYIPLPLHT FSYEDTGVFT
510 520 530 540 550
EFICRFLVQQ FPNSFTIERL KKNRGKRLYL DYVQHREGKT IVAPYSPRGN
560 570 580 590 600
NKGLIATPLL WEEVNEGLTP DLFTIPNIIK RLERMADPFK NFREVGERQP
610
FRAALDQITG KQV
Length:613
Mass (Da):71,318
Last modified:May 31, 2011 - v1
Checksum:i440F9CD712996D36
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP012157 Genomic DNA. Translation: BAK16611.1.
RefSeqiYP_006462757.1. NC_018065.1.

Genome annotation databases

EnsemblBacteriaiBAK16611; BAK16611; SSIL_2188.
GeneIDi13227142.
KEGGisiv:SSIL_2188.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP012157 Genomic DNA. Translation: BAK16611.1.
RefSeqiYP_006462757.1. NC_018065.1.

3D structure databases

ProteinModelPortaliF2F5S8.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAK16611; BAK16611; SSIL_2188.
GeneIDi13227142.
KEGGisiv:SSIL_2188.

Phylogenomic databases

KOiK01971.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of Solibacillus silvestris StLB046."
    Morohoshi T., Someya N., Ikeda T.
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: StLB046Imported.
  2. "Complete genome sequence and characterization of the N-acylhomoserine lactone-degrading gene of the potato leaf-associated Solibacillus silvestris."
    Morohoshi T., Tominaga Y., Someya N., Ikeda T.
    J. Biosci. Bioeng. 113:20-25(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: StLB046Imported.

Entry informationi

Entry nameiF2F5S8_SOLSS
AccessioniPrimary (citable) accession number: F2F5S8
Entry historyi
Integrated into UniProtKB/TrEMBL: May 31, 2011
Last sequence update: May 31, 2011
Last modified: January 7, 2015
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.