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Protein

Superoxide dismutase [Cu-Zn]

Gene

sodC

Organism
Pantoea ananatis (strain AJ13355)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

Cofactori

Protein has several cofactor binding sites:
  • Cu cationUniRule annotationNote: Binds 1 copper ion per subunit.UniRule annotation
  • Zn2+UniRule annotationNote: Binds 1 zinc ion per subunit.UniRule annotation

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. superoxide dismutase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotation

Keywords - Ligandi

CopperUniRule annotation, Metal-bindingUniRule annotation, ZincUniRule annotation

Enzyme and pathway databases

BioCyciPANA932677:GLI8-1103-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutase [Cu-Zn]UniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodCImported
Ordered Locus Names:PAJ_1085Imported
OrganismiPantoea ananatis (strain AJ13355)Imported
Taxonomic identifieri932677 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaePantoea
ProteomesiUP000006690: Chromosome

Family & Domainsi

Sequence similaritiesi

Belongs to the Cu-Zn superoxide dismutase family.UniRule annotation

Phylogenomic databases

KOiK04565.
OMAiGARYACG.

Family and domain databases

Gene3Di2.60.40.200. 1 hit.
InterProiIPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS00087. SOD_CU_ZN_1. 1 hit.
PS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F2ET27-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKVKTIALLT LLTCGAAQAA SEEVTIHEVS PQGIGKSVGT VKIEETQYGL
60 70 80 90 100
QFTPMLAGLK PGIHGFHVHA KGSCEPGESE GKTVAAGAAG GHLDPDNTGK
110 120 130 140 150
HLGPYGEGHL GDLPALYVDD QGKASYPMLA PRIKNLSEIK GKALMVHVGG
160 170
DNHADHPKPL GGGGARFACG VI
Length:172
Mass (Da):17,647
Last modified:May 31, 2011 - v1
Checksum:iC6515D63CB58C02D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP012032 Genomic DNA. Translation: BAK11165.1.
RefSeqiYP_005933961.1. NC_017531.1.

Genome annotation databases

EnsemblBacteriaiBAK11165; BAK11165; PAJ_1085.
GeneIDi12524382.
KEGGipaj:PAJ_1085.
PATRICi54222610. VBIPanAna188453_1246.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP012032 Genomic DNA. Translation: BAK11165.1.
RefSeqiYP_005933961.1. NC_017531.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAK11165; BAK11165; PAJ_1085.
GeneIDi12524382.
KEGGipaj:PAJ_1085.
PATRICi54222610. VBIPanAna188453_1246.

Phylogenomic databases

KOiK04565.
OMAiGARYACG.

Enzyme and pathway databases

BioCyciPANA932677:GLI8-1103-MONOMER.

Family and domain databases

Gene3Di2.60.40.200. 1 hit.
InterProiIPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS00087. SOD_CU_ZN_1. 1 hit.
PS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of Pantoea ananatis AJ13355."
    Hara Y.
    Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: AJ13355Imported.

Entry informationi

Entry nameiF2ET27_PANAA
AccessioniPrimary (citable) accession number: F2ET27
Entry historyi
Integrated into UniProtKB/TrEMBL: May 31, 2011
Last sequence update: May 31, 2011
Last modified: January 7, 2015
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.