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F1SSM3

- F1SSM3_PIG

UniProt

F1SSM3 - F1SSM3_PIG

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Protein
Submitted name:

Uncharacterized protein

Gene
OTX2
Organism
Sus scrofa (Pig)
Status
Unreviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription Source: Ensembl
  2. sequence-specific DNA binding Source: InterPro

GO - Biological processi

  1. axon guidance Source: Ensembl
  2. cell fate specification Source: Ensembl
  3. diencephalon morphogenesis Source: Ensembl
  4. dorsal/ventral pattern formation Source: Ensembl
  5. endoderm development Source: Ensembl
  6. eye photoreceptor cell fate commitment Source: Ensembl
  7. inner ear morphogenesis Source: Ensembl
  8. metencephalon development Source: Ensembl
  9. midbrain development Source: Ensembl
  10. primitive streak formation Source: Ensembl
  11. protein complex assembly Source: Ensembl
  12. somite rostral/caudal axis specification Source: Ensembl
Complete GO annotation...

Keywords - Ligandi

DNA-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:OTX2Imported
OrganismiSus scrofa (Pig)Imported
Taxonomic identifieri9823 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaSuinaSuidaeSus
ProteomesiUP000008227: Chromosome 1

Subcellular locationi

Nucleus By similarity UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: Ensembl
  2. growth cone Source: Ensembl
  3. nucleus Source: UniProtKB-SubCell
  4. protein complex Source: Ensembl
Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotation

Family & Domainsi

Keywords - Domaini

HomeoboxUniRule annotation

Phylogenomic databases

GeneTreeiENSGT00750000117284.
KOiK09326.
OMAiNRRAKCH.
OrthoDBiEOG74J98P.
TreeFamiTF351179.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR009057. Homeodomain-like.
IPR003022. Otx2_TF.
IPR003025. Otx_TF.
IPR013851. Otx_TF_C.
[Graphical view]
PfamiPF00046. Homeobox. 1 hit.
PF03529. TF_Otx. 1 hit.
[Graphical view]
PRINTSiPR01257. OTX2HOMEOBOX.
PR01255. OTXHOMEOBOX.
SMARTiSM00389. HOX. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F1SSM3-1 [UniParc]FASTAAdd to Basket

« Hide

MMSYLKQPPY AVNGLSLTTS GMDLLHPSVG YPATPRKQRR ERTTFTRAQL    50
DVLEALFAKT RYPDIFMREE VALKINLPES RVQVWFKNRR AKCRQQQQQQ 100
QNGGQNKVRP AKKKTSPARE VSSESGTSGQ FTPPSSTSVP AISSSSAPVS 150
IWSPASISPL SDPLSTSSSC MQRSYPMTYT QASGYSQGYA GSTSYFGGMD 200
CGSYLTPMHH QLPGPGTTLS PMGTNAVTSH LNQSPASLST QGYGASSLGF 250
NSTTDCLDYK DQTASWKLNF NADCLDYKDQ TSSWKFQVL 289
Length:289
Mass (Da):31,652
Last modified:May 3, 2011 - v1
Checksum:i9088473F3A3E207B
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CU463093 Genomic DNA. No translation available.
RefSeqiXP_003353539.1. XM_003353491.2.
XP_005660050.1. XM_005659993.1.

Genome annotation databases

EnsembliENSSSCT00000005580; ENSSSCP00000005442; ENSSSCG00000005063.
GeneIDi100512643.
KEGGissc:100512643.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CU463093 Genomic DNA. No translation available.
RefSeqi XP_003353539.1. XM_003353491.2.
XP_005660050.1. XM_005659993.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSSSCT00000005580 ; ENSSSCP00000005442 ; ENSSSCG00000005063 .
GeneIDi 100512643.
KEGGi ssc:100512643.

Organism-specific databases

CTDi 5015.

Phylogenomic databases

GeneTreei ENSGT00750000117284.
KOi K09326.
OMAi NRRAKCH.
OrthoDBi EOG74J98P.
TreeFami TF351179.

Family and domain databases

Gene3Di 1.10.10.60. 1 hit.
InterProi IPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR009057. Homeodomain-like.
IPR003022. Otx2_TF.
IPR003025. Otx_TF.
IPR013851. Otx_TF_C.
[Graphical view ]
Pfami PF00046. Homeobox. 1 hit.
PF03529. TF_Otx. 1 hit.
[Graphical view ]
PRINTSi PR01257. OTX2HOMEOBOX.
PR01255. OTXHOMEOBOX.
SMARTi SM00389. HOX. 1 hit.
[Graphical view ]
SUPFAMi SSF46689. SSF46689. 1 hit.
PROSITEi PS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Porcine genome sequencing project
    Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. Ensembl
    Submitted (MAY-2011) to UniProtKB
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiF1SSM3_PIG
AccessioniPrimary (citable) accession number: F1SSM3
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: May 14, 2014
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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