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F1SSM3

- F1SSM3_PIG

UniProt

F1SSM3 - F1SSM3_PIG

Protein
Submitted name:

Uncharacterized protein

Gene

OTX2

Organism
Sus scrofa (Pig)
Status
Unreviewed - Annotation score: 3 out of 5- Protein predictedi
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    • History
      Entry version 29 (01 Oct 2014)
      Sequence version 1 (03 May 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription Source: Ensembl
    2. sequence-specific DNA binding Source: InterPro

    GO - Biological processi

    1. axon guidance Source: Ensembl
    2. cell fate specification Source: Ensembl
    3. diencephalon morphogenesis Source: Ensembl
    4. dorsal/ventral pattern formation Source: Ensembl
    5. endoderm development Source: Ensembl
    6. eye photoreceptor cell fate commitment Source: Ensembl
    7. inner ear morphogenesis Source: Ensembl
    8. metencephalon development Source: Ensembl
    9. midbrain development Source: Ensembl
    10. primitive streak formation Source: Ensembl
    11. protein complex assembly Source: Ensembl
    12. somite rostral/caudal axis specification Source: Ensembl

    Keywords - Ligandi

    DNA-bindingUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    Name:OTX2Imported
    OrganismiSus scrofa (Pig)Imported
    Taxonomic identifieri9823 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaSuinaSuidaeSus
    ProteomesiUP000008227: Chromosome 1

    Subcellular locationi

    Nucleus UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: Ensembl
    2. growth cone Source: Ensembl
    3. nucleus Source: UniProtKB-SubCell
    4. protein complex Source: Ensembl

    Keywords - Cellular componenti

    NucleusUniRule annotation

    Family & Domainsi

    Keywords - Domaini

    HomeoboxUniRule annotation

    Phylogenomic databases

    GeneTreeiENSGT00750000117284.
    KOiK09326.
    OMAiNRRAKCH.
    OrthoDBiEOG74J98P.
    TreeFamiTF351179.

    Family and domain databases

    Gene3Di1.10.10.60. 1 hit.
    InterProiIPR017970. Homeobox_CS.
    IPR001356. Homeobox_dom.
    IPR009057. Homeodomain-like.
    IPR003022. Otx2_TF.
    IPR003025. Otx_TF.
    IPR013851. Otx_TF_C.
    [Graphical view]
    PfamiPF00046. Homeobox. 1 hit.
    PF03529. TF_Otx. 1 hit.
    [Graphical view]
    PRINTSiPR01257. OTX2HOMEOBOX.
    PR01255. OTXHOMEOBOX.
    SMARTiSM00389. HOX. 1 hit.
    [Graphical view]
    SUPFAMiSSF46689. SSF46689. 1 hit.
    PROSITEiPS00027. HOMEOBOX_1. 1 hit.
    PS50071. HOMEOBOX_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F1SSM3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MMSYLKQPPY AVNGLSLTTS GMDLLHPSVG YPATPRKQRR ERTTFTRAQL    50
    DVLEALFAKT RYPDIFMREE VALKINLPES RVQVWFKNRR AKCRQQQQQQ 100
    QNGGQNKVRP AKKKTSPARE VSSESGTSGQ FTPPSSTSVP AISSSSAPVS 150
    IWSPASISPL SDPLSTSSSC MQRSYPMTYT QASGYSQGYA GSTSYFGGMD 200
    CGSYLTPMHH QLPGPGTTLS PMGTNAVTSH LNQSPASLST QGYGASSLGF 250
    NSTTDCLDYK DQTASWKLNF NADCLDYKDQ TSSWKFQVL 289
    Length:289
    Mass (Da):31,652
    Last modified:May 3, 2011 - v1
    Checksum:i9088473F3A3E207B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CU463093 Genomic DNA. No translation available.
    RefSeqiXP_003353539.1. XM_003353491.2.
    XP_005660050.1. XM_005659993.1.

    Genome annotation databases

    EnsembliENSSSCT00000005580; ENSSSCP00000005442; ENSSSCG00000005063.
    GeneIDi100512643.
    KEGGissc:100512643.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CU463093 Genomic DNA. No translation available.
    RefSeqi XP_003353539.1. XM_003353491.2.
    XP_005660050.1. XM_005659993.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSSSCT00000005580 ; ENSSSCP00000005442 ; ENSSSCG00000005063 .
    GeneIDi 100512643.
    KEGGi ssc:100512643.

    Organism-specific databases

    CTDi 5015.

    Phylogenomic databases

    GeneTreei ENSGT00750000117284.
    KOi K09326.
    OMAi NRRAKCH.
    OrthoDBi EOG74J98P.
    TreeFami TF351179.

    Family and domain databases

    Gene3Di 1.10.10.60. 1 hit.
    InterProi IPR017970. Homeobox_CS.
    IPR001356. Homeobox_dom.
    IPR009057. Homeodomain-like.
    IPR003022. Otx2_TF.
    IPR003025. Otx_TF.
    IPR013851. Otx_TF_C.
    [Graphical view ]
    Pfami PF00046. Homeobox. 1 hit.
    PF03529. TF_Otx. 1 hit.
    [Graphical view ]
    PRINTSi PR01257. OTX2HOMEOBOX.
    PR01255. OTXHOMEOBOX.
    SMARTi SM00389. HOX. 1 hit.
    [Graphical view ]
    SUPFAMi SSF46689. SSF46689. 1 hit.
    PROSITEi PS00027. HOMEOBOX_1. 1 hit.
    PS50071. HOMEOBOX_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Porcine genome sequencing project
      Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    2. Ensembl
      Submitted (MAY-2011) to UniProtKB
      Cited for: IDENTIFICATION.

    Entry informationi

    Entry nameiF1SSM3_PIG
    AccessioniPrimary (citable) accession number: F1SSM3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 3, 2011
    Last sequence update: May 3, 2011
    Last modified: October 1, 2014
    This is version 29 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3