F1SSM3 (F1SSM3_PIG) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Uncharacterized protein Ensembl ENSSSCP00000005442

Gene names

Name:

OTX2 Ensembl ENSSSCP00000005442

Organism

Sus scrofa (Pig) [Reference proteome] Ensembl ENSSSCP00000005442

Taxonomic identifier

9823 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Laurasiatheria › Cetartiodactyla › Suina › Suidae › Sus

Protein attributes

Sequence length	289 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Subcellular location	Nucleus By similarity RuleBase RU000682.
Caution	The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSSSCP00000005442

Ontologies

Keywords
Cellular component	Nucleus RuleBase RU000682
Domain	Homeobox RuleBase RU000682
Ligand	DNA-binding RuleBase RU000682
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	axon guidance Inferred from electronic annotation. Source: Compara cell fate specification Inferred from electronic annotation. Source: Compara diencephalon morphogenesis Inferred from electronic annotation. Source: Compara dorsal/ventral pattern formation Inferred from electronic annotation. Source: Compara endoderm development Inferred from electronic annotation. Source: Compara eye photoreceptor cell fate commitment Inferred from electronic annotation. Source: Compara inner ear morphogenesis Inferred from electronic annotation. Source: Compara metencephalon development Inferred from electronic annotation. Source: Compara midbrain development Inferred from electronic annotation. Source: Compara primitive streak formation Inferred from electronic annotation. Source: Compara protein complex assembly Inferred from electronic annotation. Source: Compara somite rostral/caudal axis specification Inferred from electronic annotation. Source: Compara
Cellular_component	cytoplasm Inferred from electronic annotation. Source: Compara growth cone Inferred from electronic annotation. Source: Compara nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell protein complex Inferred from electronic annotation. Source: Compara
Molecular_function	RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription Inferred from electronic annotation. Source: Compara sequence-specific DNA binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F1SSM3 [UniParc]. Last modified May 3, 2011. Version 1. Checksum: 9088473F3A3E207B	FASTA	289	31,652
	10 20 30 40 50 60 MMSYLKQPPY AVNGLSLTTS GMDLLHPSVG YPATPRKQRR ERTTFTRAQL DVLEALFAKT 70 80 90 100 110 120 RYPDIFMREE VALKINLPES RVQVWFKNRR AKCRQQQQQQ QNGGQNKVRP AKKKTSPARE 130 140 150 160 170 180 VSSESGTSGQ FTPPSSTSVP AISSSSAPVS IWSPASISPL SDPLSTSSSC MQRSYPMTYT 190 200 210 220 230 240 QASGYSQGYA GSTSYFGGMD CGSYLTPMHH QLPGPGTTLS PMGTNAVTSH LNQSPASLST 250 260 270 280 QGYGASSLGF NSTTDCLDYK DQTASWKLNF NADCLDYKDQ TSSWKFQVL

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	Porcine genome sequencing project Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[2]	Ensembl Submitted (MAY-2011) to UniProtKB Cited for: IDENTIFICATION.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CU463093 Genomic DNA. No translation available.
RefSeq	XP_003353539.1. XM_003353491.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSSSCT00000005580; ENSSSCP00000005442; ENSSSCG00000005063.
GeneID	100512643.
KEGG	ssc:100512643.
Phylogenomic databases
GeneTree	ENSGT00700000104128.
KO	K09326.
OMA	CPVATPR.
Family and domain databases
Gene3D	1.10.10.60. 1 hit.
InterPro	IPR017970. Homeobox_CS. IPR001356. Homeodomain. IPR009057. Homeodomain-like. IPR003022. Otx2_TF. IPR003025. Otx_TF. IPR013851. Otx_TF_C. [Graphical view]
Pfam	PF00046. Homeobox. 1 hit. PF03529. TF_Otx. 1 hit. [Graphical view]
PRINTS	PR01257. OTX2HOMEOBOX. PR01255. OTXHOMEOBOX.
SMART	SM00389. HOX. 1 hit. [Graphical view]
SUPFAM	SSF46689. Homeodomain_like. 1 hit.
PROSITE	PS00027. HOMEOBOX_1. 1 hit. PS50071. HOMEOBOX_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F1SSM3_PIG

Accession

Primary (citable) accession number: F1SSM3

Entry history

Integrated into UniProtKB/TrEMBL:	May 3, 2011
Last sequence update:	May 3, 2011
Last modified:	April 3, 2013
This is version 18 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)