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Protein
Submitted name:

Uncharacterized protein

Gene

LOC100738467

Organism
Sus scrofa (Pig)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

ReactomeiR-SSC-1660662. Glycosphingolipid metabolism.
R-SSC-4085001. Sialic acid metabolism.

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:LOC100738467Imported
OrganismiSus scrofa (Pig)Imported
Taxonomic identifieri9823 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaSuinaSuidaeSus
Proteomesi
  • UP000008227 Componenti: Chromosome 15

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiF1SM45.

Interactioni

Protein-protein interaction databases

STRINGi9823.ENSSSCP00000017266.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini33 – 341309SialidasesInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG410IFVF. Eukaryota.
ENOG410Y74Z. LUCA.
GeneTreeiENSGT00390000011171.
InParanoidiF1SM45.
KOiK12357.
OMAiQDTLECQ.
OrthoDBiEOG7MSMNP.
TreeFamiTF331063.

Family and domain databases

Gene3Di2.120.10.10. 1 hit.
InterProiIPR026945. Sialidase-2.
IPR026856. Sialidase_fam.
IPR011040. Sialidases.
[Graphical view]
PANTHERiPTHR10628. PTHR10628. 1 hit.
PTHR10628:SF6. PTHR10628:SF6. 1 hit.
PfamiPF13088. BNR_2. 1 hit.
[Graphical view]
SUPFAMiSSF50939. SSF50939. 1 hit.

Sequencei

Sequence statusi: Complete.

F1SM45-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASCPVLHKE TVFQTGAHAY RIPALLYLPQ QKTLLAFAEK RASKKDEHAK
60 70 80 90 100
LIVLRRGSYD ASTRQVRWHP QEAVAQAQLE GHRSMNPSPL YDKKTGTLFL
110 120 130 140 150
FFIAIPGQVS EHHQLQTRVN LTRLCQVTST DHGRSWSPAR DLTDSVIGPA
160 170 180 190 200
HKDWATFAVG PGHCLQLHNQ TQSLLVPAYA YRNLPFPRAP APSAFCLVSH
210 220 230 240 250
DHGHTWARGS FVALDTLECQ VAEVGDAEQR VVYLNARSRL QARVQAQSTN
260 270 280 290 300
GGLDFGETQP VKQLVEPPHG CQGSIISFPS PRGGPDSPHQ WLLYTHPTDP
310 320 330 340 350
KRRSNLGVYL NRQAPAPLAW SEPALLATGS CAYSDLQSMG AGPDGSPQFG
360 370
CLYESNDYEE IVFVMFTLKQ AFPAAFLLQ
Length:379
Mass (Da):41,881
Last modified:May 3, 2011 - v1
Checksum:i336E802820DCF5A3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU928130 Genomic DNA. No translation available.
RefSeqiXP_003483814.1. XM_003483766.3.
XP_013840046.1. XM_013984592.1.

Genome annotation databases

EnsembliENSSSCT00000017747; ENSSSCP00000017266; ENSSSCG00000016297.
GeneIDi100738467.
KEGGissc:100738467.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU928130 Genomic DNA. No translation available.
RefSeqiXP_003483814.1. XM_003483766.3.
XP_013840046.1. XM_013984592.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9823.ENSSSCP00000017266.

Proteomic databases

PaxDbiF1SM45.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSSSCT00000017747; ENSSSCP00000017266; ENSSSCG00000016297.
GeneIDi100738467.
KEGGissc:100738467.

Organism-specific databases

CTDi4759.

Phylogenomic databases

eggNOGiENOG410IFVF. Eukaryota.
ENOG410Y74Z. LUCA.
GeneTreeiENSGT00390000011171.
InParanoidiF1SM45.
KOiK12357.
OMAiQDTLECQ.
OrthoDBiEOG7MSMNP.
TreeFamiTF331063.

Enzyme and pathway databases

ReactomeiR-SSC-1660662. Glycosphingolipid metabolism.
R-SSC-4085001. Sialic acid metabolism.

Family and domain databases

Gene3Di2.120.10.10. 1 hit.
InterProiIPR026945. Sialidase-2.
IPR026856. Sialidase_fam.
IPR011040. Sialidases.
[Graphical view]
PANTHERiPTHR10628. PTHR10628. 1 hit.
PTHR10628:SF6. PTHR10628:SF6. 1 hit.
PfamiPF13088. BNR_2. 1 hit.
[Graphical view]
SUPFAMiSSF50939. SSF50939. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Porcine genome sequencing project
    Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. Ensembl
    Submitted (MAY-2011) to UniProtKB
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiF1SM45_PIG
AccessioniPrimary (citable) accession number: F1SM45
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: April 13, 2016
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.