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F1SDX6 (F1SDX6_PIG) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length687 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Binds 1 calcium ion per subunit By similarity. PIRSR PIRSR000459-2

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSSSCP00000022472

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site2771 By similarity
Active site3351 By similarity PIRSR PIRSR000459-1
Active site3581 By similarity
Metal binding3981Calcium By similarity PIRSR PIRSR000459-2
Metal binding4001Calcium By similarity PIRSR PIRSR000459-2
Metal binding4471Calcium By similarity PIRSR PIRSR000459-2
Metal binding4521Calcium By similarity PIRSR PIRSR000459-2

Sequences

Sequence LengthMass (Da)Tools
F1SDX6 [UniParc].

Last modified May 3, 2011. Version 1.
Checksum: BC3D1B64300930BE

FASTA68777,224
        10         20         30         40         50         60 
MAEDLILERC DLELEANGRD HHTADLCRER LVVRRGQAFR LTLHFEGRNY EPSVDRLTFS 

        70         80         90        100        110        120 
AVTGPAPSEE AGTKARFRLS DAAEEGAWRA EVVDQQDNTL SLQLSTPASA PIGLYRLNLE 

       130        140        150        160        170        180 
ASTGYEGSSF LLGHFTLLFN AWCPADDVYL DSDEERQEYV LTQQGFVYQG SAKFIKSIPW 

       190        200        210        220        230        240 
NFGQFEDGIL DSCLMLLDVN PKFMRDAGRD CSRRSSPVYV GRVVSGMVNC NDDQGVLLGR 

       250        260        270        280        290        300 
WDNNYGDGVS PMFWIGSVDI LRRWKNHGCQ RVKYGQCWVF AAVACTVLRC LGIPTRVVTN 

       310        320        330        340        350        360 
YNSAHDQNSN LLIEYFRNEF GEIQSDKSEM IWNFHCWVES WMTRPDLQPG YEGWQALDPT 

       370        380        390        400        410        420 
PQEKSEGTYC CGPVPVRAIK EGDLSTKYDA PFVFAEVNAD VVDWIRRDDG SVYKSINRSL 

       430        440        450        460        470        480 
VVGLKISTKS VGRDEREDIT HTYKYPEGSP EEREAFTKAN HLNKLADKEE SEVAMRIRVG 

       490        500        510        520        530        540 
EGMNMGSDFD VFAHITNNTA EEHTGRLLLC ARTVSYNGVL GPECGTKDLL NFSLEPYSEK 

       550        560        570        580        590        600 
SVPLRILYEK YCDCLTESNL IKVRGLLIEP AANSYLLAER DIYLENPEIK IRILGEPKQN 

       610        620        630        640        650        660 
RKLVAEVSLR NPLTTPLSGC IFTVEGAGLT EEQKTVEIPD PVGAGEEVKV RVDLLPLLVG 

       670        680 
RHKLVVNFNS NRLKAVKGFR NVIVGPS 

« Hide

References

« Hide 'large scale' references
[1]Porcine genome sequencing project
Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[2]Ensembl
Submitted (NOV-2012) to UniProtKB
Cited for: IDENTIFICATION.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CU467005 Genomic DNA. No translation available.
RefSeqXP_003360037.2. XM_003359989.3.
UniGeneSsc.84061.
Ssc.98088.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSSSCT00000031001; ENSSSCP00000022472; ENSSSCG00000023522.
GeneID100154530.
KEGGssc:100154530.

Phylogenomic databases

GeneTreeENSGT00740000115156.
KOK05625.
OMAANGRDHH.
OrthoDBEOG7WT40M.
TreeFamTF324278.

Family and domain databases

Gene3D2.60.40.10. 3 hits.
3.90.260.10. 1 hit.
InterProIPR023608. Gln_gamma-glutamylTfrase_euk.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
IPR002931. Transglutaminase-like.
IPR008958. Transglutaminase_C.
IPR013808. Transglutaminase_CS.
IPR001102. Transglutaminase_N.
[Graphical view]
PANTHERPTHR11590. PTHR11590. 1 hit.
PfamPF00927. Transglut_C. 2 hits.
PF01841. Transglut_core. 1 hit.
PF00868. Transglut_N. 1 hit.
[Graphical view]
PIRSFPIRSF000459. TGM_EBP42. 1 hit.
SMARTSM00460. TGc. 1 hit.
[Graphical view]
SUPFAMSSF49309. SSF49309. 2 hits.
SSF81296. SSF81296. 1 hit.
PROSITEPS00547. TRANSGLUTAMINASES. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF1SDX6_PIG
AccessionPrimary (citable) accession number: F1SDX6
Entry history
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: July 9, 2014
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)