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F1SCA0 (F1SCA0_PIG) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length1850 AA.
Sequence statusFragment.
Protein existencePredicted

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSSSCP00000011156

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 Ensembl ENSSSCP00000011156

Sequences

Sequence LengthMass (Da)Tools
F1SCA0 [UniParc].

Last modified July 11, 2012. Version 2.
Checksum: AD87F4E206607279

FASTA1,850207,080
        10         20         30         40         50         60 
FCFFRLDRLF ILLDTGTTPV TRKAAAQQLG EVVKLHPHEL NNLLSKVLIY LRSTNWDTRI 

        70         80         90        100        110        120 
AAGQAVEAIV KNVPEWNPVP RTKQETTSES AMEDSSTTDR LNFDRFDICR LLQHGASLLG 

       130        140        150        160        170        180 
SAGAEFEVQD EKSGEVDPKE RIARQRKLLQ KKLGLNMGEA IGMSTEELFN DEDLDYTPTS 

       190        200        210        220        230        240 
AALVNKQPTL QAAELIDSEF RTGMSNRQKN KAKRMAKLFA KQRSRDAVET NEKSNDSTDG 

       250        260        270        280        290        300 
EPEEKRRKIA NVVINQSAND SKVLIDNIPD SSPLIEETNE WPLESFCEEL CNDLFNPSWE 

       310        320        330        340        350        360 
VRHGAGTGLR EILKAHGKSG GKMGDSTLEE MIQQHQEWLE DLVIRLLCVF ALDRFGDFVS 

       370        380        390        400        410        420 
DEVVAPVRET CAQTLGVVLK HMNETGVHKT VDVLLKLLTQ EQWEVRHGGL LGIKYALAVR 

       430        440        450        460        470        480 
QDVINTLLPK VLTRIIEGLQ DLDDDVRAVA AASLVPVVES LVYLQTPKVP FIINTLWDAL 

       490        500        510        520        530        540 
LELDDLTAST NSIMTLLSSL LTYPQVQQCS IQQSLTVLVP RVWPFLHHTI SSVRRAALET 

       550        560        570        580        590        600 
LFTLLSTQDQ NSSSWLIPIL PDMLRHIFQF CVLESSQEIL DLIHKVWMEL LSKASVQYVV 

       610        620        630        640        650        660 
AAACPWMGAW LCLMMQPSHL PIDLNMLLEV KARAKEKTGG KVRQGQSQSK EVLQEYIAGA 

       670        680        690        700        710        720 
DTIMEDPATR DFVVMRARMM AAKLLGALCC CICDPGVNVV TQEIKPAESL GQLLLFHLNS 

       730        740        750        760        770        780 
KSALQRISVA LVICEWAALQ KECRAVTLAV QPRLLDILSE HLYYDEIAVP FTRMQNECKQ 

       790        800        810        820        830        840 
LISSLADAHI EVGNRVNSNV FTIDQANDLV TTVFNEVTSS FDLNPPVLQQ LDSKRQQVQM 

       850        860        870        880        890        900 
TVTETNQEWQ VLQLRVHTFA ACAVVSLQQL PEKLNPIIKP LMETIKKEEN TLVQNYAAQC 

       910        920        930        940        950        960 
IAKLLQQCTA RTPCPNSKIV KNLCSSLCVD PYLTPSVTCP VPTQSGQENS KGSNSEKDGM 

       970        980        990       1000       1010       1020 
HHTVTKHRGI ITLYRHQKAA FAITSRRGPT PKAVKAQIAD LPAGGSGNIL VELDEAQKPY 

      1030       1040       1050       1060       1070       1080 
LVQRRGAEFA LTTIVKHFGG EMAVKLPHLW DAMVGPLRNT ININNFDGKS LLEKGDGPAQ 

      1090       1100       1110       1120       1130       1140 
ELVNSLQVFE TAAVSMDSEL HPLLVQHLPH LYMCLQYPST AVRHMAARCV GVMSKIATME 

      1150       1160       1170       1180       1190       1200 
TMNIFLEKVL PWLGAIDDNI KQEGAIEALA CSVMEQLDVG IVPYIVLLVV PVLGRMSDQT 

      1210       1220       1230       1240       1250       1260 
DSVRFMATQC FATLIRLMPL EAGIPDPPNM SEELIQLKAK ERHFLEQLLD GKKLENYEIP 

      1270       1280       1290       1300       1310       1320 
VPINAELRKY QQDGVNWLAF LNKYKLHGIL CDDMGLGKTL QSICILAGDH CHRAQEYARS 

      1330       1340       1350       1360       1370       1380 
KLAECMPLPS LVVCPPTLTG HWVDEVGKFC SREYLNPLHY TGPPTERVRL QHQVKRHNLI 

      1390       1400       1410       1420       1430       1440 
VASYDVVRND IDFFRNIKFN YCILDEGHVI KNGKTKLSKA VKQLTANYRI ILSGTPIQNN 

      1450       1460       1470       1480       1490       1500 
VLELWSLFDF LMPGFLGTER QFAARYGKPI LASRDARSSS REQEAGVLAM DALHRQVLPF 

      1510       1520       1530       1540       1550       1560 
LLRRMKEDVL QDLPPKIIQD YYCTLSPLQV QLYEDFAKSR AKCDVDETVS SAALSEETEK 

      1570       1580       1590       1600       1610       1620 
PKLKATGHVF QALQYLRKLC NHPALVLTPQ HPEFKSTTEK LAVQNSSLHD IQHAPKLSAL 

      1630       1640       1650       1660       1670       1680 
KQLLLDCGLG NGSTSESGTE SIVAQHRILI FCQLKSMLDI VEHDLLKPHL PSVTYLRLDG 

      1690       1700       1710       1720       1730       1740 
SIPPGQRHSI VSRFNNDPSI DVLLLTTHVG GLGLNLTGAD TVVFVEHDWN PMRDLQAMDR 

      1750       1760       1770       1780       1790       1800 
AHRIGQKRVV NVYRLITRGT LEEKIMGLQK FKMNIANTVI SQENSSLQSM GTDQLLDLFT 

      1810       1820       1830       1840       1850 
LDKDGKAEKA DTSTSGKASM KSILENLSDL WDQEQYDSEY SLENFMHSLK 

« Hide

References

« Hide 'large scale' references
[1]Porcine genome sequencing project
Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[2]Ensembl
Submitted (MAY-2011) to UniProtKB
Cited for: IDENTIFICATION.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CT868714 Genomic DNA. No translation available.
CT954286 Genomic DNA. No translation available.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSSSCT00000011455; ENSSSCP00000011156; ENSSSCG00000010467.

Phylogenomic databases

GeneTreeENSGT00630000089754.
OMACQMKEML.
OrthoDBEOG72G16J.
TreeFamTF300546.

Family and domain databases

Gene3D1.25.10.10. 5 hits.
3.40.50.300. 1 hit.
InterProIPR011989. ARM-like.
IPR016024. ARM-type_fold.
IPR022707. DUF3535.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR000330. SNF2_N.
[Graphical view]
PfamPF12054. DUF3535. 1 hit.
PF00271. Helicase_C. 1 hit.
PF00176. SNF2_N. 1 hit.
[Graphical view]
SMARTSM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view]
SUPFAMSSF48371. SSF48371. 5 hits.
SSF52540. SSF52540. 2 hits.
PROSITEPS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF1SCA0_PIG
AccessionPrimary (citable) accession number: F1SCA0
Entry history
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: July 11, 2012
Last modified: April 16, 2014
This is version 18 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)