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F1S574

- F1S574_PIG

UniProt

F1S574 - F1S574_PIG

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Protein

Alpha-amylase

Gene

LOC100522672

Organism
Sus scrofa (Pig)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotationSAAS annotation

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. cation binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Enzyme and pathway databases

ReactomeiREACT_256284. Digestion of dietary carbohydrate.

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
Name:LOC100522672Imported
Synonyms:LOC100521789Imported
OrganismiSus scrofa (Pig)Imported
Taxonomic identifieri9823 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaSuinaSuidaeSus
ProteomesiUP000008227: Chromosome 4

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Phylogenomic databases

GeneTreeiENSGT00390000002882.
InParanoidiF1S574.
KOiK01176.
OMAiSNTYITA.
OrthoDBiEOG7RJPR2.
TreeFamiTF312850.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR006048. A-amylase_b_C.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
SM00632. Aamy_C. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

F1S574-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKLFLLLSAI GFCWAQYAPQ TQSGRTSIVH LFEWRWVDIA LECERYLGPK
60 70 80 90 100
GFGGVQVSPP NENIVVTNPS RPWWERYQPV SYKLCTRSGN ENEFRDMVTR
110 120 130 140 150
CNNVGVRIYV DAVINHMCGS GAAAGTGTTC GSYCNPGNRE FPAVPYSAWD
160 170 180 190 200
FNDGKCKTAS GGIESYNDPY QVRDCQLVGL LDLALEKDYV RSMIADYLNK
210 220 230 240 250
LIDIGVAGFR IDASKHMWPG DIKAVLDKLH NLNTNWFPAG SRPFIFQEVI
260 270 280 290 300
DLGGEAIQSS EYFGNGRVTE FKYGAKLGTV VRKWSGEKMS YLKNWGEGWG
310 320 330 340 350
FMPSDRALVF VDNHDNQRGH GAGGASILTF WDARLYKVAV GFMLAHPYGF
360 370 380 390 400
TRVMSSYRWA RNFVNGQDVN DWIGPPNNNG VIKEVTINAD TTCGNDWVCE
410 420 430 440 450
HRWRQIRNMV WFRNVVDGQP FANWWDNGSN QVAFGRGNRG FIVFNNDDWQ
460 470 480 490 500
LSSTLQTGLP GGTYCDVISG DKVGNSCTGI KVYVSSDGTA QFSISNSAED
510
PFIAIHAESK L
Length:511
Mass (Da):57,096
Last modified:July 11, 2012 - v2
Checksum:i41218CB520858618
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU467903 Genomic DNA. No translation available.
RefSeqiXP_001929171.1. XM_001929136.5.
XP_003125929.1. XM_003125881.4.
XP_005663678.1. XM_005663621.1.
XP_005663679.1. XM_005663622.1.
XP_005663680.1. XM_005663623.1.
XP_005663681.1. XM_005663624.1.
XP_005663682.1. XM_005663625.1.
XP_005663683.1. XM_005663626.1.
UniGeneiSsc.94418.

Genome annotation databases

EnsembliENSSSCT00000007507; ENSSSCP00000007308; ENSSSCG00000023098.
ENSSSCT00000022747; ENSSSCP00000026998; ENSSSCG00000025216.
GeneIDi100152255.
100521789.
397397.
KEGGissc:100152255.
ssc:100521789.
ssc:397397.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU467903 Genomic DNA. No translation available.
RefSeqi XP_001929171.1. XM_001929136.5.
XP_003125929.1. XM_003125881.4.
XP_005663678.1. XM_005663621.1.
XP_005663679.1. XM_005663622.1.
XP_005663680.1. XM_005663623.1.
XP_005663681.1. XM_005663624.1.
XP_005663682.1. XM_005663625.1.
XP_005663683.1. XM_005663626.1.
UniGenei Ssc.94418.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSSSCT00000007507 ; ENSSSCP00000007308 ; ENSSSCG00000023098 .
ENSSSCT00000022747 ; ENSSSCP00000026998 ; ENSSSCG00000025216 .
GeneIDi 100152255.
100521789.
397397.
KEGGi ssc:100152255.
ssc:100521789.
ssc:397397.

Organism-specific databases

CTDi 279.
397397.

Phylogenomic databases

GeneTreei ENSGT00390000002882.
InParanoidi F1S574.
KOi K01176.
OMAi SNTYITA.
OrthoDBi EOG7RJPR2.
TreeFami TF312850.

Enzyme and pathway databases

Reactomei REACT_256284. Digestion of dietary carbohydrate.

Family and domain databases

Gene3Di 2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProi IPR006048. A-amylase_b_C.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
[Graphical view ]
PRINTSi PR00110. ALPHAAMYLASE.
SMARTi SM00642. Aamy. 1 hit.
SM00632. Aamy_C. 1 hit.
[Graphical view ]
SUPFAMi SSF51445. SSF51445. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Porcine genome sequencing project
    Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. Ensembl
    Submitted (MAY-2011) to UniProtKB
    Cited for: IDENTIFICATION.
  3. Ensembl
    Submitted (MAY-2012) to UniProtKB
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiF1S574_PIG
AccessioniPrimary (citable) accession number: F1S574
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: July 11, 2012
Last modified: November 26, 2014
This is version 33 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3