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F1S574 (F1S574_PIG) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length511 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units. RuleBase RU361134 SAAS SAAS006589

Sequence similarities

Belongs to the glycosyl hydrolase 13 family. RuleBase RU003615

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSSSCP00000026998 Ensembl ENSSSCP00000007308

Sequences

Sequence LengthMass (Da)Tools
F1S574 [UniParc].

Last modified July 11, 2012. Version 2.
Checksum: 41218CB520858618

FASTA51157,096
        10         20         30         40         50         60 
MKLFLLLSAI GFCWAQYAPQ TQSGRTSIVH LFEWRWVDIA LECERYLGPK GFGGVQVSPP 

        70         80         90        100        110        120 
NENIVVTNPS RPWWERYQPV SYKLCTRSGN ENEFRDMVTR CNNVGVRIYV DAVINHMCGS 

       130        140        150        160        170        180 
GAAAGTGTTC GSYCNPGNRE FPAVPYSAWD FNDGKCKTAS GGIESYNDPY QVRDCQLVGL 

       190        200        210        220        230        240 
LDLALEKDYV RSMIADYLNK LIDIGVAGFR IDASKHMWPG DIKAVLDKLH NLNTNWFPAG 

       250        260        270        280        290        300 
SRPFIFQEVI DLGGEAIQSS EYFGNGRVTE FKYGAKLGTV VRKWSGEKMS YLKNWGEGWG 

       310        320        330        340        350        360 
FMPSDRALVF VDNHDNQRGH GAGGASILTF WDARLYKVAV GFMLAHPYGF TRVMSSYRWA 

       370        380        390        400        410        420 
RNFVNGQDVN DWIGPPNNNG VIKEVTINAD TTCGNDWVCE HRWRQIRNMV WFRNVVDGQP 

       430        440        450        460        470        480 
FANWWDNGSN QVAFGRGNRG FIVFNNDDWQ LSSTLQTGLP GGTYCDVISG DKVGNSCTGI 

       490        500        510 
KVYVSSDGTA QFSISNSAED PFIAIHAESK L 

« Hide

References

« Hide 'large scale' references
[1]Porcine genome sequencing project
Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[2]Ensembl
Submitted (MAY-2011) to UniProtKB
Cited for: IDENTIFICATION.
[3]Ensembl
Submitted (MAY-2012) to UniProtKB
Cited for: IDENTIFICATION.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CU467903 Genomic DNA. No translation available.
RefSeqXP_001929171.1. XM_001929136.5.
XP_003125929.1. XM_003125881.4.
XP_005663678.1. XM_005663621.1.
XP_005663679.1. XM_005663622.1.
XP_005663680.1. XM_005663623.1.
XP_005663681.1. XM_005663624.1.
XP_005663682.1. XM_005663625.1.
XP_005663683.1. XM_005663626.1.
UniGeneSsc.94418.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSSSCT00000007507; ENSSSCP00000007308; ENSSSCG00000023098.
ENSSSCT00000022747; ENSSSCP00000026998; ENSSSCG00000025216.
GeneID100152255.
100521789.
397397.
KEGGssc:100152255.
ssc:100521789.
ssc:397397.

Organism-specific databases

CTD279.
397397.

Phylogenomic databases

GeneTreeENSGT00390000002882.
KOK01176.
OMASNTYITA.
OrthoDBEOG7RJPR2.
TreeFamTF312850.

Family and domain databases

Gene3D2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProIPR006048. A-amylase_b_C.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
[Graphical view]
PRINTSPR00110. ALPHAAMYLASE.
SMARTSM00642. Aamy. 1 hit.
SM00632. Aamy_C. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 1 hit.
ProtoNetSearch...

Entry information

Entry nameF1S574_PIG
AccessionPrimary (citable) accession number: F1S574
Entry history
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: July 11, 2012
Last modified: July 9, 2014
This is version 30 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)