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F1RT18

- F1RT18_PIG

UniProt

F1RT18 - F1RT18_PIG

Protein
Submitted name:

Uncharacterized protein

Gene

NEIL3

Organism
Sus scrofa (Pig)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi
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    • History
      Entry version 18 (01 Oct 2014)
      Sequence version 1 (03 May 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. bubble DNA binding Source: Ensembl
    2. damaged DNA binding Source: InterPro
    3. DNA-(apurinic or apyrimidinic site) lyase activity Source: Ensembl
    4. DNA N-glycosylase activity Source: Ensembl
    5. double-stranded DNA binding Source: Ensembl
    6. single-stranded DNA binding Source: Ensembl
    7. zinc ion binding Source: InterPro

    GO - Biological processi

    1. base-excision repair Source: InterPro
    2. nucleotide-excision repair Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    Name:NEIL3Imported
    OrganismiSus scrofa (Pig)Imported
    Taxonomic identifieri9823 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaSuinaSuidaeSus
    ProteomesiUP000008227: Chromosome 15

    Subcellular locationi

    GO - Cellular componenti

    1. nucleus Source: Ensembl

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00730000110955.
    KOiK10569.
    OMAiICFFDSS.
    OrthoDBiEOG7W153D.
    TreeFamiTF331502.

    Family and domain databases

    InterProiIPR015886. DNA_glyclase/AP_lyase_DNA-bd.
    IPR015887. DNA_glyclase_Znf_dom_DNA_BS.
    IPR012319. DNA_glycosylase/AP_lyase_cat.
    IPR010979. Ribosomal_S13-like_H2TH.
    IPR000214. Znf_DNA_glyclase/AP_lyase.
    IPR010666. Znf_GRF.
    IPR001876. Znf_RanBP2.
    [Graphical view]
    PfamiPF06831. H2TH. 1 hit.
    PF06839. zf-GRF. 2 hits.
    PF00641. zf-RanBP. 1 hit.
    [Graphical view]
    SMARTiSM00547. ZnF_RBZ. 1 hit.
    [Graphical view]
    SUPFAMiSSF46946. SSF46946. 1 hit.
    SSF81624. SSF81624. 1 hit.
    PROSITEiPS51068. FPG_CAT. 1 hit.
    PS01242. ZF_FPG_1. 1 hit.
    PS51066. ZF_FPG_2. 1 hit.
    PS01358. ZF_RANBP2_1. 1 hit.
    PS50199. ZF_RANBP2_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F1RT18-1 [UniParc]FASTAAdd to Basket

    « Hide

    MVEGPGCTLN GEKIRARVRP GQAVTDVRGS ALQNAGGPGL PLSASETVVP    50
    SQAIALNNNK LCSQNSLRLL NGHVYSGVET LGKELFMYFG PKALRIHFGM 100
    KGSLAINPLE SKSKNGVSPV FEVQLTKDLI CFFDSSVEIR NTAESQQRIR 150
    MMEELDVCSP KFSFSRAERE VKKQGGRMLC DVLMDQKVLP GVGNIIKNEA 200
    LFDSGLHPAV KVCQLTDEQT HHLVKMIHDF SILFYRCCKA GSAVSKHYKV 250
    YKRPNCGQCF CKITVCRLGE NNRMTYFCPH CQKENPQHVD ICLLPARNTF 300
    VPWPSSRENH FTDCVARKSE EQWTCEVCTL INKPSSQACD ACLSSRPVDS 350
    VLENKENPTA LNNLVKYPCN SFGKPRTEVK INRKTAFGTT TLVLTDFSNK 400
    SSALKREESQ KQILDGEFPN PLSSPERANY ITQLSNKVNV LPMICTQSKI 450
    FSPAYTNLKT THYSSPDHKT CNPGFSNSEL QINTTDGPHT LNAGSPRCSK 500
    HGRPCILRVV RKDGENKGRQ FYACPLPREA QCGFFEWADL SFPFCNHGKR 550
    SIMRTVLKIG PNNGKNFFVC PLGKEKQCNF FQWAENGPGI NIIPGC 596
    Length:596
    Mass (Da):66,365
    Last modified:May 3, 2011 - v1
    Checksum:i01577D2D3A0E6F27
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CU571340 Genomic DNA. No translation available.
    CU582769 Genomic DNA. No translation available.
    RefSeqiXP_001926185.2. XM_001926150.3.
    UniGeneiSsc.31258.

    Genome annotation databases

    EnsembliENSSSCT00000017172; ENSSSCP00000016711; ENSSSCG00000015771.
    GeneIDi100156631.
    KEGGissc:100156631.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CU571340 Genomic DNA. No translation available.
    CU582769 Genomic DNA. No translation available.
    RefSeqi XP_001926185.2. XM_001926150.3.
    UniGenei Ssc.31258.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSSSCT00000017172 ; ENSSSCP00000016711 ; ENSSSCG00000015771 .
    GeneIDi 100156631.
    KEGGi ssc:100156631.

    Organism-specific databases

    CTDi 55247.

    Phylogenomic databases

    GeneTreei ENSGT00730000110955.
    KOi K10569.
    OMAi ICFFDSS.
    OrthoDBi EOG7W153D.
    TreeFami TF331502.

    Family and domain databases

    InterProi IPR015886. DNA_glyclase/AP_lyase_DNA-bd.
    IPR015887. DNA_glyclase_Znf_dom_DNA_BS.
    IPR012319. DNA_glycosylase/AP_lyase_cat.
    IPR010979. Ribosomal_S13-like_H2TH.
    IPR000214. Znf_DNA_glyclase/AP_lyase.
    IPR010666. Znf_GRF.
    IPR001876. Znf_RanBP2.
    [Graphical view ]
    Pfami PF06831. H2TH. 1 hit.
    PF06839. zf-GRF. 2 hits.
    PF00641. zf-RanBP. 1 hit.
    [Graphical view ]
    SMARTi SM00547. ZnF_RBZ. 1 hit.
    [Graphical view ]
    SUPFAMi SSF46946. SSF46946. 1 hit.
    SSF81624. SSF81624. 1 hit.
    PROSITEi PS51068. FPG_CAT. 1 hit.
    PS01242. ZF_FPG_1. 1 hit.
    PS51066. ZF_FPG_2. 1 hit.
    PS01358. ZF_RANBP2_1. 1 hit.
    PS50199. ZF_RANBP2_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Porcine genome sequencing project
      Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    2. Ensembl
      Submitted (MAY-2011) to UniProtKB
      Cited for: IDENTIFICATION.

    Entry informationi

    Entry nameiF1RT18_PIG
    AccessioniPrimary (citable) accession number: F1RT18
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 3, 2011
    Last sequence update: May 3, 2011
    Last modified: October 1, 2014
    This is version 18 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3