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F1RT18 (F1RT18_PIG) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 17. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length596 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSSSCP00000016711

Sequences

Sequence LengthMass (Da)Tools
F1RT18 [UniParc].

Last modified May 3, 2011. Version 1.
Checksum: 01577D2D3A0E6F27

FASTA59666,365
        10         20         30         40         50         60 
MVEGPGCTLN GEKIRARVRP GQAVTDVRGS ALQNAGGPGL PLSASETVVP SQAIALNNNK 

        70         80         90        100        110        120 
LCSQNSLRLL NGHVYSGVET LGKELFMYFG PKALRIHFGM KGSLAINPLE SKSKNGVSPV 

       130        140        150        160        170        180 
FEVQLTKDLI CFFDSSVEIR NTAESQQRIR MMEELDVCSP KFSFSRAERE VKKQGGRMLC 

       190        200        210        220        230        240 
DVLMDQKVLP GVGNIIKNEA LFDSGLHPAV KVCQLTDEQT HHLVKMIHDF SILFYRCCKA 

       250        260        270        280        290        300 
GSAVSKHYKV YKRPNCGQCF CKITVCRLGE NNRMTYFCPH CQKENPQHVD ICLLPARNTF 

       310        320        330        340        350        360 
VPWPSSRENH FTDCVARKSE EQWTCEVCTL INKPSSQACD ACLSSRPVDS VLENKENPTA 

       370        380        390        400        410        420 
LNNLVKYPCN SFGKPRTEVK INRKTAFGTT TLVLTDFSNK SSALKREESQ KQILDGEFPN 

       430        440        450        460        470        480 
PLSSPERANY ITQLSNKVNV LPMICTQSKI FSPAYTNLKT THYSSPDHKT CNPGFSNSEL 

       490        500        510        520        530        540 
QINTTDGPHT LNAGSPRCSK HGRPCILRVV RKDGENKGRQ FYACPLPREA QCGFFEWADL 

       550        560        570        580        590 
SFPFCNHGKR SIMRTVLKIG PNNGKNFFVC PLGKEKQCNF FQWAENGPGI NIIPGC 

« Hide

References

« Hide 'large scale' references
[1]Porcine genome sequencing project
Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[2]Ensembl
Submitted (MAY-2011) to UniProtKB
Cited for: IDENTIFICATION.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CU571340 Genomic DNA. No translation available.
CU582769 Genomic DNA. No translation available.
RefSeqXP_001926185.2. XM_001926150.3.
UniGeneSsc.31258.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSSSCT00000017172; ENSSSCP00000016711; ENSSSCG00000015771.
GeneID100156631.
KEGGssc:100156631.

Organism-specific databases

CTD55247.

Phylogenomic databases

GeneTreeENSGT00730000110955.
KOK10569.
OMAICFFDSS.
OrthoDBEOG7W153D.
TreeFamTF331502.

Family and domain databases

InterProIPR015886. DNA_glyclase/AP_lyase_DNA-bd.
IPR015887. DNA_glyclase_Znf_dom_DNA_BS.
IPR012319. DNA_glycosylase/AP_lyase_cat.
IPR010979. Ribosomal_S13-like_H2TH.
IPR000214. Znf_DNA_glyclase/AP_lyase.
IPR010666. Znf_GRF.
IPR001876. Znf_RanBP2.
[Graphical view]
PfamPF06831. H2TH. 1 hit.
PF06839. zf-GRF. 2 hits.
PF00641. zf-RanBP. 1 hit.
[Graphical view]
SMARTSM00547. ZnF_RBZ. 1 hit.
[Graphical view]
SUPFAMSSF46946. SSF46946. 1 hit.
SSF81624. SSF81624. 1 hit.
PROSITEPS51068. FPG_CAT. 1 hit.
PS01242. ZF_FPG_1. 1 hit.
PS51066. ZF_FPG_2. 1 hit.
PS01358. ZF_RANBP2_1. 1 hit.
PS50199. ZF_RANBP2_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF1RT18_PIG
AccessionPrimary (citable) accession number: F1RT18
Entry history
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: February 19, 2014
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)