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F1RT18

- F1RT18_PIG

UniProt

F1RT18 - F1RT18_PIG

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Protein
Submitted name: Uncharacterized protein
Gene
NEIL3
Organism
Sus scrofa (Pig)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA N-glycosylase activity Source: Ensembl
  2. DNA-(apurinic or apyrimidinic site) lyase activity Source: Ensembl
  3. bubble DNA binding Source: Ensembl
  4. damaged DNA binding Source: InterPro
  5. double-stranded DNA binding Source: Ensembl
  6. single-stranded DNA binding Source: Ensembl
  7. zinc ion binding Source: InterPro

GO - Biological processi

  1. base-excision repair Source: InterPro
  2. nucleotide-excision repair Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:NEIL3Imported
OrganismiSus scrofa (Pig)Imported
Taxonomic identifieri9823 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaSuinaSuidaeSus
ProteomesiUP000008227: Chromosome 15

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: Ensembl
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00730000110955.
KOiK10569.
OMAiICFFDSS.
OrthoDBiEOG7W153D.
TreeFamiTF331502.

Family and domain databases

InterProiIPR015886. DNA_glyclase/AP_lyase_DNA-bd.
IPR015887. DNA_glyclase_Znf_dom_DNA_BS.
IPR012319. DNA_glycosylase/AP_lyase_cat.
IPR010979. Ribosomal_S13-like_H2TH.
IPR000214. Znf_DNA_glyclase/AP_lyase.
IPR010666. Znf_GRF.
IPR001876. Znf_RanBP2.
[Graphical view]
PfamiPF06831. H2TH. 1 hit.
PF06839. zf-GRF. 2 hits.
PF00641. zf-RanBP. 1 hit.
[Graphical view]
SMARTiSM00547. ZnF_RBZ. 1 hit.
[Graphical view]
SUPFAMiSSF46946. SSF46946. 1 hit.
SSF81624. SSF81624. 1 hit.
PROSITEiPS51068. FPG_CAT. 1 hit.
PS01242. ZF_FPG_1. 1 hit.
PS51066. ZF_FPG_2. 1 hit.
PS01358. ZF_RANBP2_1. 1 hit.
PS50199. ZF_RANBP2_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F1RT18-1 [UniParc]FASTAAdd to Basket

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MVEGPGCTLN GEKIRARVRP GQAVTDVRGS ALQNAGGPGL PLSASETVVP    50
SQAIALNNNK LCSQNSLRLL NGHVYSGVET LGKELFMYFG PKALRIHFGM 100
KGSLAINPLE SKSKNGVSPV FEVQLTKDLI CFFDSSVEIR NTAESQQRIR 150
MMEELDVCSP KFSFSRAERE VKKQGGRMLC DVLMDQKVLP GVGNIIKNEA 200
LFDSGLHPAV KVCQLTDEQT HHLVKMIHDF SILFYRCCKA GSAVSKHYKV 250
YKRPNCGQCF CKITVCRLGE NNRMTYFCPH CQKENPQHVD ICLLPARNTF 300
VPWPSSRENH FTDCVARKSE EQWTCEVCTL INKPSSQACD ACLSSRPVDS 350
VLENKENPTA LNNLVKYPCN SFGKPRTEVK INRKTAFGTT TLVLTDFSNK 400
SSALKREESQ KQILDGEFPN PLSSPERANY ITQLSNKVNV LPMICTQSKI 450
FSPAYTNLKT THYSSPDHKT CNPGFSNSEL QINTTDGPHT LNAGSPRCSK 500
HGRPCILRVV RKDGENKGRQ FYACPLPREA QCGFFEWADL SFPFCNHGKR 550
SIMRTVLKIG PNNGKNFFVC PLGKEKQCNF FQWAENGPGI NIIPGC 596
Length:596
Mass (Da):66,365
Last modified:May 3, 2011 - v1
Checksum:i01577D2D3A0E6F27
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CU571340 Genomic DNA. No translation available.
CU582769 Genomic DNA. No translation available.
RefSeqiXP_001926185.2. XM_001926150.3.
UniGeneiSsc.31258.

Genome annotation databases

EnsembliENSSSCT00000017172; ENSSSCP00000016711; ENSSSCG00000015771.
GeneIDi100156631.
KEGGissc:100156631.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CU571340 Genomic DNA. No translation available.
CU582769 Genomic DNA. No translation available.
RefSeqi XP_001926185.2. XM_001926150.3.
UniGenei Ssc.31258.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSSSCT00000017172 ; ENSSSCP00000016711 ; ENSSSCG00000015771 .
GeneIDi 100156631.
KEGGi ssc:100156631.

Organism-specific databases

CTDi 55247.

Phylogenomic databases

GeneTreei ENSGT00730000110955.
KOi K10569.
OMAi ICFFDSS.
OrthoDBi EOG7W153D.
TreeFami TF331502.

Family and domain databases

InterProi IPR015886. DNA_glyclase/AP_lyase_DNA-bd.
IPR015887. DNA_glyclase_Znf_dom_DNA_BS.
IPR012319. DNA_glycosylase/AP_lyase_cat.
IPR010979. Ribosomal_S13-like_H2TH.
IPR000214. Znf_DNA_glyclase/AP_lyase.
IPR010666. Znf_GRF.
IPR001876. Znf_RanBP2.
[Graphical view ]
Pfami PF06831. H2TH. 1 hit.
PF06839. zf-GRF. 2 hits.
PF00641. zf-RanBP. 1 hit.
[Graphical view ]
SMARTi SM00547. ZnF_RBZ. 1 hit.
[Graphical view ]
SUPFAMi SSF46946. SSF46946. 1 hit.
SSF81624. SSF81624. 1 hit.
PROSITEi PS51068. FPG_CAT. 1 hit.
PS01242. ZF_FPG_1. 1 hit.
PS51066. ZF_FPG_2. 1 hit.
PS01358. ZF_RANBP2_1. 1 hit.
PS50199. ZF_RANBP2_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Porcine genome sequencing project
    Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. Ensembl
    Submitted (MAY-2011) to UniProtKB
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiF1RT18_PIG
AccessioniPrimary (citable) accession number: F1RT18
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: February 19, 2014
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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