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F1RT18

- F1RT18_PIG

UniProt

F1RT18 - F1RT18_PIG

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Protein
Submitted name:

Uncharacterized protein

Gene

NEIL3

Organism
Sus scrofa (Pig)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. bubble DNA binding Source: Ensembl
  2. damaged DNA binding Source: InterPro
  3. DNA-(apurinic or apyrimidinic site) lyase activity Source: InterPro
  4. DNA N-glycosylase activity Source: Ensembl
  5. double-stranded DNA binding Source: Ensembl
  6. single-stranded DNA binding Source: Ensembl
  7. zinc ion binding Source: InterPro

GO - Biological processi

  1. base-excision repair Source: InterPro
  2. nucleotide-excision repair Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:NEIL3Imported
OrganismiSus scrofa (Pig)Imported
Taxonomic identifieri9823 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaSuinaSuidaeSus
ProteomesiUP000008227: Chromosome 15

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: Ensembl
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00730000110955.
InParanoidiF1RT18.
KOiK10569.
OMAiICFFDSS.
OrthoDBiEOG7W153D.
TreeFamiTF331502.

Family and domain databases

InterProiIPR015886. DNA_glyclase/AP_lyase_DNA-bd.
IPR015887. DNA_glyclase_Znf_dom_DNA_BS.
IPR012319. DNA_glycosylase/AP_lyase_cat.
IPR010979. Ribosomal_S13-like_H2TH.
IPR000214. Znf_DNA_glyclase/AP_lyase.
IPR010666. Znf_GRF.
IPR001876. Znf_RanBP2.
[Graphical view]
PfamiPF06831. H2TH. 1 hit.
PF06839. zf-GRF. 2 hits.
PF00641. zf-RanBP. 1 hit.
[Graphical view]
SMARTiSM00547. ZnF_RBZ. 1 hit.
[Graphical view]
SUPFAMiSSF46946. SSF46946. 1 hit.
SSF81624. SSF81624. 1 hit.
PROSITEiPS51068. FPG_CAT. 1 hit.
PS01242. ZF_FPG_1. 1 hit.
PS51066. ZF_FPG_2. 1 hit.
PS01358. ZF_RANBP2_1. 1 hit.
PS50199. ZF_RANBP2_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F1RT18-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MVEGPGCTLN GEKIRARVRP GQAVTDVRGS ALQNAGGPGL PLSASETVVP
60 70 80 90 100
SQAIALNNNK LCSQNSLRLL NGHVYSGVET LGKELFMYFG PKALRIHFGM
110 120 130 140 150
KGSLAINPLE SKSKNGVSPV FEVQLTKDLI CFFDSSVEIR NTAESQQRIR
160 170 180 190 200
MMEELDVCSP KFSFSRAERE VKKQGGRMLC DVLMDQKVLP GVGNIIKNEA
210 220 230 240 250
LFDSGLHPAV KVCQLTDEQT HHLVKMIHDF SILFYRCCKA GSAVSKHYKV
260 270 280 290 300
YKRPNCGQCF CKITVCRLGE NNRMTYFCPH CQKENPQHVD ICLLPARNTF
310 320 330 340 350
VPWPSSRENH FTDCVARKSE EQWTCEVCTL INKPSSQACD ACLSSRPVDS
360 370 380 390 400
VLENKENPTA LNNLVKYPCN SFGKPRTEVK INRKTAFGTT TLVLTDFSNK
410 420 430 440 450
SSALKREESQ KQILDGEFPN PLSSPERANY ITQLSNKVNV LPMICTQSKI
460 470 480 490 500
FSPAYTNLKT THYSSPDHKT CNPGFSNSEL QINTTDGPHT LNAGSPRCSK
510 520 530 540 550
HGRPCILRVV RKDGENKGRQ FYACPLPREA QCGFFEWADL SFPFCNHGKR
560 570 580 590
SIMRTVLKIG PNNGKNFFVC PLGKEKQCNF FQWAENGPGI NIIPGC
Length:596
Mass (Da):66,365
Last modified:May 3, 2011 - v1
Checksum:i01577D2D3A0E6F27
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU571340 Genomic DNA. No translation available.
CU582769 Genomic DNA. No translation available.
RefSeqiXP_001926185.2. XM_001926150.3.
UniGeneiSsc.31258.

Genome annotation databases

EnsembliENSSSCT00000017172; ENSSSCP00000016711; ENSSSCG00000015771.
GeneIDi100156631.
KEGGissc:100156631.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU571340 Genomic DNA. No translation available.
CU582769 Genomic DNA. No translation available.
RefSeqi XP_001926185.2. XM_001926150.3.
UniGenei Ssc.31258.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSSSCT00000017172 ; ENSSSCP00000016711 ; ENSSSCG00000015771 .
GeneIDi 100156631.
KEGGi ssc:100156631.

Organism-specific databases

CTDi 55247.

Phylogenomic databases

GeneTreei ENSGT00730000110955.
InParanoidi F1RT18.
KOi K10569.
OMAi ICFFDSS.
OrthoDBi EOG7W153D.
TreeFami TF331502.

Family and domain databases

InterProi IPR015886. DNA_glyclase/AP_lyase_DNA-bd.
IPR015887. DNA_glyclase_Znf_dom_DNA_BS.
IPR012319. DNA_glycosylase/AP_lyase_cat.
IPR010979. Ribosomal_S13-like_H2TH.
IPR000214. Znf_DNA_glyclase/AP_lyase.
IPR010666. Znf_GRF.
IPR001876. Znf_RanBP2.
[Graphical view ]
Pfami PF06831. H2TH. 1 hit.
PF06839. zf-GRF. 2 hits.
PF00641. zf-RanBP. 1 hit.
[Graphical view ]
SMARTi SM00547. ZnF_RBZ. 1 hit.
[Graphical view ]
SUPFAMi SSF46946. SSF46946. 1 hit.
SSF81624. SSF81624. 1 hit.
PROSITEi PS51068. FPG_CAT. 1 hit.
PS01242. ZF_FPG_1. 1 hit.
PS51066. ZF_FPG_2. 1 hit.
PS01358. ZF_RANBP2_1. 1 hit.
PS50199. ZF_RANBP2_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Porcine genome sequencing project
    Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. Ensembl
    Submitted (MAY-2011) to UniProtKB
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiF1RT18_PIG
AccessioniPrimary (citable) accession number: F1RT18
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: November 26, 2014
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3