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F1RDG9

- FYNB_DANRE

UniProt

F1RDG9 - FYNB_DANRE

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Protein

Tyrosine-protein kinase fynb

Gene

fynb

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at transcript leveli

Functioni

Tyrosine-protein kinase implicated in the control of cell growth. Plays a role in the regulation of intracellular calcium levels. Required in brain development and mature brain function with important roles in the regulation of axon growth, axon guidance, and neurite extension. Role in CNTN1-mediated signaling (By similarity).By similarity

Catalytic activityi

ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphate.PROSITE-ProRule annotation

Cofactori

Mn2+By similarity

Enzyme regulationi

Inhibited by phosphorylation of Tyr-538 by leukocyte common antigen and activated by dephosphorylation of this site.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei306 – 3061ATPPROSITE-ProRule annotation
Active sitei397 – 3971Proton acceptorPROSITE-ProRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi284 – 2929ATPPROSITE-ProRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. metal ion binding Source: UniProtKB-KW
  3. non-membrane spanning protein tyrosine kinase activity Source: UniProtKB-EC

GO - Biological processi

  1. convergent extension involved in gastrulation Source: ZFIN
  2. fin regeneration Source: ZFIN
  3. regulation of protein kinase activity Source: ZFIN
Complete GO annotation...

Keywords - Molecular functioni

Developmental protein, Kinase, Transferase, Tyrosine-protein kinase

Keywords - Ligandi

ATP-binding, Manganese, Metal-binding, Nucleotide-binding

Enzyme and pathway databases

ReactomeiREACT_174907. Regulation of KIT signaling.
REACT_175016. Role of LAT2/NTAL/LAB on calcium mobilization.
REACT_181648. Signaling by SCF-KIT.
REACT_182699. DAP12 signaling.
REACT_182784. Antigen activates B Cell Receptor (BCR) leading to generation of second messengers.
REACT_210358. Regulation of signaling by CBL.
REACT_214033. Netrin mediated repulsion signals.
REACT_221534. FCGR activation.
REACT_236763. CRMPs in Sema3A signaling.
REACT_237315. EPH-Ephrin signaling.
REACT_241235. Nephrin interactions.
REACT_242647. NCAM signaling for neurite out-growth.
REACT_250238. SEMA3A-Plexin repulsion signaling by inhibiting Integrin adhesion.
REACT_250749. Ephrin signaling.
REACT_250874. Sema3A PAK dependent Axon repulsion.
REACT_250881. EPH-ephrin mediated repulsion of cells.
REACT_257607. VEGFA-VEGFR2 Pathway.
REACT_258838. EPHA-mediated growth cone collapse.
REACT_259366. EPHB-mediated forward signaling.
REACT_263135. DCC mediated attractive signaling.

Names & Taxonomyi

Protein namesi
Recommended name:
Tyrosine-protein kinase fynb (EC:2.7.10.2)
Alternative name(s):
Proto-oncogene c-Fynb
Gene namesi
Name:fynb
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
ProteomesiUP000000437: Chromosome 20

Organism-specific databases

ZFINiZDB-GENE-050706-89. fynb.

Subcellular locationi

Cytoplasm By similarity

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

Pathology & Biotechi

Keywords - Diseasei

Proto-oncogene

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11RemovedBy similarity
Chaini2 – 544543Tyrosine-protein kinase fynbPRO_0000418879Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Lipidationi2 – 21N-myristoyl glycineBy similarity
Lipidationi3 – 31S-palmitoyl cysteineBy similarity
Lipidationi6 – 61S-palmitoyl cysteineBy similarity
Modified residuei427 – 4271Phosphotyrosine; by autocatalysisBy similarity
Modified residuei538 – 5381PhosphotyrosineBy similarity

Keywords - PTMi

Lipoprotein, Myristate, Palmitate, Phosphoprotein

Expressioni

Gene expression databases

BgeeiF1RDG9.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000037198.

Structurei

3D structure databases

ProteinModelPortaliF1RDG9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini89 – 15062SH3PROSITE-ProRule annotationAdd
BLAST
Domaini156 – 25398SH2PROSITE-ProRule annotationAdd
BLAST
Domaini278 – 531254Protein kinasePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the protein kinase superfamily. Tyr protein kinase family. SRC subfamily.PROSITE-ProRule annotation
Contains 1 protein kinase domain.PROSITE-ProRule annotation
Contains 1 SH2 domain.PROSITE-ProRule annotation
Contains 1 SH3 domain.PROSITE-ProRule annotation

Keywords - Domaini

SH2 domain, SH3 domain

Phylogenomic databases

GeneTreeiENSGT00760000118938.
InParanoidiF1RDG9.
KOiK05703.
OMAiQCWKKDA.
OrthoDBiEOG7GTT2V.
TreeFamiTF351634.

Family and domain databases

Gene3Di3.30.505.10. 1 hit.
InterProiIPR011009. Kinase-like_dom.
IPR000719. Prot_kinase_dom.
IPR017441. Protein_kinase_ATP_BS.
IPR001245. Ser-Thr/Tyr_kinase_cat_dom.
IPR000980. SH2.
IPR001452. SH3_domain.
IPR008266. Tyr_kinase_AS.
IPR020635. Tyr_kinase_cat_dom.
[Graphical view]
PfamiPF07714. Pkinase_Tyr. 1 hit.
PF00017. SH2. 1 hit.
PF00018. SH3_1. 1 hit.
[Graphical view]
PRINTSiPR00401. SH2DOMAIN.
PR00452. SH3DOMAIN.
PR00109. TYRKINASE.
SMARTiSM00252. SH2. 1 hit.
SM00326. SH3. 1 hit.
SM00219. TyrKc. 1 hit.
[Graphical view]
SUPFAMiSSF50044. SSF50044. 1 hit.
SSF55550. SSF55550. 1 hit.
SSF56112. SSF56112. 1 hit.
PROSITEiPS00107. PROTEIN_KINASE_ATP. 1 hit.
PS50011. PROTEIN_KINASE_DOM. 1 hit.
PS00109. PROTEIN_KINASE_TYR. 1 hit.
PS50001. SH2. 1 hit.
PS50002. SH3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

F1RDG9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MGCVQCKDKE AAKLTDDRDT SLSQSGVGYR YGVDPTPQHY PAFSGTGTAV
60 70 80 90 100
AAIPNYNNFH GAAVSQGMTV FGGISTSTHQ GTLRTRGGTG VTLFVALYDY
110 120 130 140 150
EARTEDDLSF RKGEKFQIIN STEGDWWDAR SLTTGGTGYI PSNYVAPVDS
160 170 180 190 200
IQAEDWYFGK LGRKDAERQL LSTGNPRGTF LIRESETTKG AFSLSIRDWD
210 220 230 240 250
DVKGDHVKHY KIRKLDSGGY YITTRAQFET LQQLVQHYTE RAAGLCCRLV
260 270 280 290 300
VPCHKGMPRL TDLSVKTKDV WEIPRESLQL IKRLGNGQFG EVWMGTWNGN
310 320 330 340 350
TKVAIKTLKP GTMSPESFLE EAQIMKKLRH DKLVQLYAVV SEEPIYIVTE
360 370 380 390 400
YMGKGSLLDF LKDGEGRALK LPNLVDMAAQ VAGGMAYIER MNYIHRDLRS
410 420 430 440 450
ANILVGDSLV CKIADFGLAR LIEDNEYTAR QGAKFPIKWT APEAALYGKF
460 470 480 490 500
TIKSDVWSFG ILLTELVTKG RVPYPGMNNR EVLEQVERGY RMQCPQDCPS
510 520 530 540
SLHELMVQCW KKDAEERPTF EYLQAFLEDY FTATEPQYQP GDNL
Length:544
Mass (Da):61,030
Last modified:May 3, 2011 - v1
Checksum:i287C2FCF09C51B15
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti65 – 651S → P in AAH98534. 1 PublicationCurated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL954744 Genomic DNA. No translation available.
FP015917 Genomic DNA. No translation available.
BC098534 mRNA. Translation: AAH98534.1.
RefSeqiNP_001025140.1. NM_001029969.1.
XP_005160359.1. XM_005160302.2.
UniGeneiDr.134137.

Genome annotation databases

EnsembliENSDART00000036635; ENSDARP00000037198; ENSDARG00000025319.
GeneIDi574422.
KEGGidre:574422.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL954744 Genomic DNA. No translation available.
FP015917 Genomic DNA. No translation available.
BC098534 mRNA. Translation: AAH98534.1 .
RefSeqi NP_001025140.1. NM_001029969.1.
XP_005160359.1. XM_005160302.2.
UniGenei Dr.134137.

3D structure databases

ProteinModelPortali F1RDG9.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 7955.ENSDARP00000037198.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSDART00000036635 ; ENSDARP00000037198 ; ENSDARG00000025319 .
GeneIDi 574422.
KEGGi dre:574422.

Organism-specific databases

CTDi 574422.
ZFINi ZDB-GENE-050706-89. fynb.

Phylogenomic databases

GeneTreei ENSGT00760000118938.
InParanoidi F1RDG9.
KOi K05703.
OMAi QCWKKDA.
OrthoDBi EOG7GTT2V.
TreeFami TF351634.

Enzyme and pathway databases

Reactomei REACT_174907. Regulation of KIT signaling.
REACT_175016. Role of LAT2/NTAL/LAB on calcium mobilization.
REACT_181648. Signaling by SCF-KIT.
REACT_182699. DAP12 signaling.
REACT_182784. Antigen activates B Cell Receptor (BCR) leading to generation of second messengers.
REACT_210358. Regulation of signaling by CBL.
REACT_214033. Netrin mediated repulsion signals.
REACT_221534. FCGR activation.
REACT_236763. CRMPs in Sema3A signaling.
REACT_237315. EPH-Ephrin signaling.
REACT_241235. Nephrin interactions.
REACT_242647. NCAM signaling for neurite out-growth.
REACT_250238. SEMA3A-Plexin repulsion signaling by inhibiting Integrin adhesion.
REACT_250749. Ephrin signaling.
REACT_250874. Sema3A PAK dependent Axon repulsion.
REACT_250881. EPH-ephrin mediated repulsion of cells.
REACT_257607. VEGFA-VEGFR2 Pathway.
REACT_258838. EPHA-mediated growth cone collapse.
REACT_259366. EPHB-mediated forward signaling.
REACT_263135. DCC mediated attractive signaling.

Miscellaneous databases

NextBioi 20891930.

Gene expression databases

Bgeei F1RDG9.

Family and domain databases

Gene3Di 3.30.505.10. 1 hit.
InterProi IPR011009. Kinase-like_dom.
IPR000719. Prot_kinase_dom.
IPR017441. Protein_kinase_ATP_BS.
IPR001245. Ser-Thr/Tyr_kinase_cat_dom.
IPR000980. SH2.
IPR001452. SH3_domain.
IPR008266. Tyr_kinase_AS.
IPR020635. Tyr_kinase_cat_dom.
[Graphical view ]
Pfami PF07714. Pkinase_Tyr. 1 hit.
PF00017. SH2. 1 hit.
PF00018. SH3_1. 1 hit.
[Graphical view ]
PRINTSi PR00401. SH2DOMAIN.
PR00452. SH3DOMAIN.
PR00109. TYRKINASE.
SMARTi SM00252. SH2. 1 hit.
SM00326. SH3. 1 hit.
SM00219. TyrKc. 1 hit.
[Graphical view ]
SUPFAMi SSF50044. SSF50044. 1 hit.
SSF55550. SSF55550. 1 hit.
SSF56112. SSF56112. 1 hit.
PROSITEi PS00107. PROTEIN_KINASE_ATP. 1 hit.
PS50011. PROTEIN_KINASE_DOM. 1 hit.
PS00109. PROTEIN_KINASE_TYR. 1 hit.
PS50001. SH2. 1 hit.
PS50002. SH3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The zebrafish reference genome sequence and its relationship to the human genome."
    Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.
    , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
    Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Tuebingen.
  2. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Eye.

Entry informationi

Entry nameiFYNB_DANRE
AccessioniPrimary (citable) accession number: F1RDG9
Secondary accession number(s): Q4KMJ8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 5, 2012
Last sequence update: May 3, 2011
Last modified: November 26, 2014
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3