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Protein
Submitted name:

PR domain-containing 1c, with ZNF domain

Gene

prdm1c

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
PR domain-containing 1c, with ZNF domainImported
Gene namesi
Name:prdm1cImported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 20

Organism-specific databases

ZFINiZDB-GENE-080618-3. prdm1c.

PTM / Processingi

Proteomic databases

PaxDbiF1R2X5.

Expressioni

Gene expression databases

BgeeiENSDARG00000078161.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000119461.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini53 – 167SETInterPro annotationAdd BLAST115
Domaini420 – 447C2H2-typeInterPro annotationAdd BLAST28
Domaini448 – 475C2H2-typeInterPro annotationAdd BLAST28
Domaini476 – 503C2H2-typeInterPro annotationAdd BLAST28
Domaini504 – 531C2H2-typeInterPro annotationAdd BLAST28

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG2461. Eukaryota.
ENOG410ZFVU. LUCA.
GeneTreeiENSGT00880000137973.
InParanoidiF1R2X5.
OrthoDBiEOG091G0467.
TreeFamiTF316545.

Family and domain databases

InterProiView protein in InterPro
IPR001214. SET_dom.
IPR036236. Znf_C2H2_sf.
IPR013087. Znf_C2H2_type.
SMARTiView protein in SMART
SM00355. ZnF_C2H2. 5 hits.
SUPFAMiSSF57667. SSF57667. 3 hits.
PROSITEiView protein in PROSITE
PS50280. SET. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 4 hits.
PS50157. ZINC_FINGER_C2H2_2. 4 hits.

Sequencei

Sequence statusi: Complete.

F1R2X5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPSKTLTTTS KNSISAQTEE QRVEETHTCH LKNQHEADFD GWKKSRAQTS
60 70 80 90 100
LPRNLRFTYL NQKVLGVLAT EVIPAGTCLG PLQAKHLHPE DTPADVHPQH
110 120 130 140 150
IWRVYSAGRL DHLLSCEEES SSNWMCFINS AQSPWQQNLA PFQVGMQIYF
160 170 180 190 200
SAMKVIMPGE ELMVGRSLEY RQPMSSSLRT SGLKQPPPTH TDPQGKVRKR
210 220 230 240 250
KRGYTVTEIL DLDPRTDHHT ETPLNKPFST NAQSKHERKV TRDLQNPKLA
260 270 280 290 300
SSSATYSIFD NIQRHVYTSA FPQSSLPRYT LPIIQYMPHN IPLQLVHMYP
310 320 330 340 350
SSLSPTSNRN HFSLVSIKKS NFRNEATDSI KTKNKPEDSI KLAHSQPPAL
360 370 380 390 400
SNATHSSLYR ADDITAKSLH TGVASLNMGR ASADGSSSST TESHDAIKQT
410 420 430 440 450
VQGYRSLPYP LQRQNGKIQY TCNVCGKNFS QLSNLKVHLR VHSGEKPYRC
460 470 480 490 500
NICRRSFSQL AHLQKHIQVH TGEKPHECHV CARRFSSCSN LKKHLRLHSG
510 520 530 540 550
ERPYVCKQCS ASFTQHVHLR LHRRIHATPQ SHQCPHCPRR YTHICSLQIH
560 570 580 590 600
LQQFCPSSST TSPASLLGLA NKEIERFDVS EEAERLEVSM EMEAIKRMCH
610 620 630 640
VIWAQTLAGA SVLQQGAAHI NTIKSGSSCS LIPNVSGKQE ASE
Length:643
Mass (Da):72,350
Last modified:May 3, 2011 - v1
Checksum:i4EFCA7AEAF42D750
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU138532 Genomic DNA. No translation available.
RefSeqiXP_017208061.1. XM_017352572.1.
UniGeneiDr.124690.

Genome annotation databases

EnsembliENSDART00000126350; ENSDARP00000105656; ENSDARG00000078161.
ENSDART00000139491; ENSDARP00000119461; ENSDARG00000078161.
GeneIDi100150534.

Similar proteinsi

Entry informationi

Entry nameiF1R2X5_DANRE
AccessioniPrimary (citable) accession number: F1R2X5
Secondary accession number(s): F1QY84
Entry historyiIntegrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: November 22, 2017
This is version 52 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported