F1R1Y8 (F1R1Y8_DANRE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Retinoic acid receptor RXR-alpha-A Ensembl ENSDARP00000104454

Gene names

Name:

rxraa Ensembl ENSDARP00000104454 ZFIN ZDB-GENE-070314-2

Organism

Danio rerio (Zebrafish) (Brachydanio rerio) [Reference proteome] Ensembl ENSDARP00000104454

Taxonomic identifier

7955 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Actinopterygii › Actinopteri › Neopterygii › Teleostei › Elopocephala › Clupeocephala › Otocephala › Ostariophysi › Otophysi › Cypriniphysi › Cypriniformes › Cyprinoidea › Cyprinidae › Danio

Protein attributes

Sequence length	495 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Sequence similarities	Belongs to the nuclear hormone receptor family. RuleBase RU000377 Contains 1 nuclear receptor DNA-binding domain. SAAS SAAS000536
Caution	The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSDARP00000104454

Ontologies

Keywords
Biological process	Transcription Transcription regulation RuleBase RU004334 SAAS SAAS000536
Cellular component	Nucleus RuleBase RU004334 SAAS SAAS000536
Domain	Zinc-finger RuleBase RU004334 SAAS SAAS000536
Ligand	DNA-binding RuleBase RU004334 SAAS SAAS000536 Metal-binding Zinc
Molecular function	Receptor RuleBase RU004334
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	nucleus Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	sequence-specific DNA binding Inferred from electronic annotation. Source: InterPro sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro steroid hormone receptor activity Inferred from electronic annotation. Source: InterPro zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F1R1Y8 [UniParc]. Last modified May 3, 2011. Version 1. Checksum: A9028AC9AB4180C1	FASTA	495	54,405
	10 20 30 40 50 60 METKPFLSLG FLKPQCSLPP PPQRGRAEAC TCFSGMCALH QRRLSTDCTG QVTSSPLSSP 70 80 90 100 110 120 TSHRGMHPSL LSPTSLGPSG SLHSPISTLS SPMNGLGSPF SVISSPMGPH SMASPGVGYG 130 140 150 160 170 180 PSISPQLNSP MNSVSSSEDI KPPLGLNGVM KVPAQPSGTP LSLTKHICAI CGDRSSGKHY 190 200 210 220 230 240 GVYSCEGCKG FFKRTVRKDL TYTCRDNKDC VIDKRQRNRC QYCRYQKCLA MGMKREAVQE 250 260 270 280 290 300 ERQRAKERSE NEVESTSSAN EDMPVEKILE AELAVEPKTE TYIETNVPMP SNSPNDPVTN 310 320 330 340 350 360 ICQAADKQLF TLVEWAKRIP HFSELPLDDQ VILLRAGWNE LLIASFSHRS IAVKDGILLA 370 380 390 400 410 420 TGLHVHRNSA HSAGVGAIFD RVLTELVSKM RDMQMDKTEL GCLRAIVLFN PDSKGLSNPG 430 440 450 460 470 480 EVEALREKVY ASLEAYCKHK YPEQPGRFAK LLLRLPALRS IGLKCLEHLF FFKLIGDTPI 490 DTFLMEMLEA PHQMT

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The genomic sequence of Danio rerio." The Danio rerio Sequencing Project at the Sanger Institute Submitted (JUL-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Tuebingen Ensembl ENSDARP00000104454.
[2]	Ensembl Submitted (JUL-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: Tuebingen Ensembl ENSDARP00000104454.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BX001031 Genomic DNA. No translation available. CU062650 Genomic DNA. No translation available.
IPI	IPI00994409.
3D structure databases
ProteinModelPortal	F1R1Y8.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSDART00000124173; ENSDARP00000104454; ENSDARG00000057737.
Organism-specific databases
ZFIN	ZDB-GENE-070314-2. rxraa.
Phylogenomic databases
GeneTree	ENSGT00690000101777.
Gene expression databases
ArrayExpress	F1R1Y8.
Bgee	F1R1Y8.
Family and domain databases
Gene3D	1.10.565.10. 1 hit. 3.30.50.10. 1 hit.
InterPro	IPR021780. Nuc_recep-AF1. IPR008946. Nucl_hormone_rcpt_ligand-bd. IPR000536. Nucl_hrmn_rcpt_lig-bd_core. IPR000003. Retinoid-X_rcpt/HNF4. IPR001723. Str_hrmn_rcpt. IPR001628. Znf_hrmn_rcpt. IPR013088. Znf_NHR/GATA. [Graphical view]
Pfam	PF00104. Hormone_recep. 1 hit. PF11825. Nuc_recep-AF1. 1 hit. PF00105. zf-C4. 1 hit. [Graphical view]
PRINTS	PR00545. RETINOIDXR. PR00398. STRDHORMONER. PR00047. STROIDFINGER.
SMART	SM00430. HOLI. 1 hit. SM00399. ZnF_C4. 1 hit. [Graphical view]
SUPFAM	SSF48508. Str_ncl_receptor. 1 hit.
PROSITE	PS00031. NUCLEAR_REC_DBD_1. 1 hit. PS51030. NUCLEAR_REC_DBD_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F1R1Y8_DANRE

Accession

Primary (citable) accession number: F1R1Y8

Entry history

Integrated into UniProtKB/TrEMBL:	May 3, 2011
Last sequence update:	May 3, 2011
Last modified:	April 3, 2013
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)