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F1QM47

- F1QM47_DANRE

UniProt

F1QM47 - F1QM47_DANRE

Protein
Submitted name:

Uncharacterized protein

Gene

c7a

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 22 (01 Oct 2014)
      Sequence version 1 (03 May 2011)
      Previous versions | rss
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    Functioni

    GO - Biological processi

    1. immune response Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    Name:c7aImported
    Synonyms:si:dkey-250l23.2Imported
    OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
    Taxonomic identifieri7955 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
    ProteomesiUP000000437: Chromosome 8

    Organism-specific databases

    ZFINiZDB-GENE-081104-392. c7a.

    Subcellular locationi

    GO - Cellular componenti

    1. membrane attack complex Source: InterPro

    PTM / Processingi

    Keywords - PTMi

    Disulfide bondSAAS annotation

    Structurei

    3D structure databases

    ProteinModelPortaliF1QM47.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00550000074478.
    OMAiERFGTHY.
    OrthoDBiEOG7ZSHS9.
    TreeFamiTF330498.

    Family and domain databases

    Gene3Di4.10.400.10. 1 hit.
    InterProiIPR023415. LDLR_class-A_CS.
    IPR002172. LDrepeatLR_classA_rpt.
    IPR001862. MAC_perforin.
    IPR020864. MACPF.
    IPR020863. MACPF_CS.
    IPR000436. Sushi_SCR_CCP.
    IPR000884. Thrombospondin_1_rpt.
    [Graphical view]
    PfamiPF00057. Ldl_recept_a. 1 hit.
    PF01823. MACPF. 1 hit.
    PF00084. Sushi. 2 hits.
    PF00090. TSP_1. 2 hits.
    [Graphical view]
    PRINTSiPR00764. COMPLEMENTC9.
    SMARTiSM00032. CCP. 2 hits.
    SM00192. LDLa. 1 hit.
    SM00209. TSP1. 2 hits.
    [Graphical view]
    SUPFAMiSSF57424. SSF57424. 1 hit.
    SSF57535. SSF57535. 2 hits.
    SSF82895. SSF82895. 2 hits.
    PROSITEiPS01209. LDLRA_1. 1 hit.
    PS50068. LDLRA_2. 1 hit.
    PS00279. MACPF_1. 1 hit.
    PS51412. MACPF_2. 1 hit.
    PS50923. SUSHI. 2 hits.
    PS50092. TSP1. 2 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    F1QM47-1 [UniParc]FASTAAdd to Basket

    « Hide

    XLYRQTACRE MCVLLQIATM KCVFLHGVFL LSLLSSAPIT HAGSLRSIRS    50
    ASEPVHCLWG SWSSWSACDR CSKTQTQIRF VAVFSQFGGQ PCTGSSTRTQ 100
    TCISTQVCPL EEGCGGRFRC QSGKCISLSL VCNSDQDCED GSDEQRCDSK 150
    PICKISENTN LQKPPPNVEI TGQGFDAAKR EARGTVINTK SFGGLCQKTF 200
    SGDHKDFYRL PQSVLSYSFQ VTAKNDFTDE SFASSWHYLH HYEKHEKTTG 250
    TDYGHDDYVF HDELSQSKSK NLMIIKSDVE VGQFKNKDPE YLPLSEDFWK 300
    ALVALPVVYD YAAYRNVLER FGTHYISEGS LGGHFKLYLM ASEDVISKLK 350
    SEKRDYEDCV VTSHSVMFFI RWSTKTCKTD TIDETKTFYK SIPESDMKTD 400
    IIGGDPGFIA KLSMFYKYDV KENARTFSQW SGSLKYYPRI IKSKLRSLHE 450
    LVKEVPCAGL KRFLLKRAIE TYLTEKHSCQ CRECQNNGLR VLDGNVCKCV 500
    CKPGTSGQAC EYGTAYDEQP GVIHGDWACW SSWSSCSGGQ KSRRRSCTRP 550
    APSGGRDCIG NTEERTACED EEELNHLRSM EPHCFDDSIK PRESCKTPPF 600
    VPNGFVLYPK DVYPVGSKIE YTCIEGYHLI GNAIAKCQED LNWLQYPVEC 650
    KKTQCDPPQL PPDVTANPWK LNYNIGEAIA LSCPEGKVKE GLDEIQCNAG 700
    LSWSPQPKNT KCLTAVLKPT VVPVKCQPWE NLAKDKCVCK VPHQCKSSLE 750
    VCVTDEKRGR TQRLSVCKVQ AMRCLGHQYS LAEDSACQWT QPSTNNCTRC 800
    TLGETCDEQT NSCRCKTSED CSSPDTWIHV CVKQDKASAP VTMTECEVAM 850
    RKCRGETVHI VSIQACQS 868
    Length:868
    Mass (Da):97,348
    Last modified:May 3, 2011 - v1
    Checksum:i7EB1AC082EF815BC
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei1 – 11Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BX571721 Genomic DNA. No translation available.

    Genome annotation databases

    EnsembliENSDART00000146933; ENSDARP00000118698; ENSDARG00000042172.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BX571721 Genomic DNA. No translation available.

    3D structure databases

    ProteinModelPortali F1QM47.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSDART00000146933 ; ENSDARP00000118698 ; ENSDARG00000042172 .

    Organism-specific databases

    ZFINi ZDB-GENE-081104-392. c7a.

    Phylogenomic databases

    GeneTreei ENSGT00550000074478.
    OMAi ERFGTHY.
    OrthoDBi EOG7ZSHS9.
    TreeFami TF330498.

    Family and domain databases

    Gene3Di 4.10.400.10. 1 hit.
    InterProi IPR023415. LDLR_class-A_CS.
    IPR002172. LDrepeatLR_classA_rpt.
    IPR001862. MAC_perforin.
    IPR020864. MACPF.
    IPR020863. MACPF_CS.
    IPR000436. Sushi_SCR_CCP.
    IPR000884. Thrombospondin_1_rpt.
    [Graphical view ]
    Pfami PF00057. Ldl_recept_a. 1 hit.
    PF01823. MACPF. 1 hit.
    PF00084. Sushi. 2 hits.
    PF00090. TSP_1. 2 hits.
    [Graphical view ]
    PRINTSi PR00764. COMPLEMENTC9.
    SMARTi SM00032. CCP. 2 hits.
    SM00192. LDLa. 1 hit.
    SM00209. TSP1. 2 hits.
    [Graphical view ]
    SUPFAMi SSF57424. SSF57424. 1 hit.
    SSF57535. SSF57535. 2 hits.
    SSF82895. SSF82895. 2 hits.
    PROSITEi PS01209. LDLRA_1. 1 hit.
    PS50068. LDLRA_2. 1 hit.
    PS00279. MACPF_1. 1 hit.
    PS51412. MACPF_2. 1 hit.
    PS50923. SUSHI. 2 hits.
    PS50092. TSP1. 2 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: TuebingenImported.
    2. "The zebrafish reference genome sequence and its relationship to the human genome."
      Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.
      , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
      Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: TuebingenImported.

    Entry informationi

    Entry nameiF1QM47_DANRE
    AccessioniPrimary (citable) accession number: F1QM47
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 3, 2011
    Last sequence update: May 3, 2011
    Last modified: October 1, 2014
    This is version 22 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3