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F1QM47 (F1QM47_DANRE) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Protein attributes

Sequence length868 AA.
Sequence statusFragment.
Protein existencePredicted

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSDARP00000118698

Ontologies

Keywords
   PTMDisulfide bond SAAS SAAS002172
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processimmune response

Inferred from electronic annotation. Source: InterPro

   Cellular_componentmembrane attack complex

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 Ensembl ENSDARP00000118698

Sequences

Sequence LengthMass (Da)Tools
F1QM47 [UniParc].

Last modified May 3, 2011. Version 1.
Checksum: 7EB1AC082EF815BC

FASTA86897,348
        10         20         30         40         50         60 
XLYRQTACRE MCVLLQIATM KCVFLHGVFL LSLLSSAPIT HAGSLRSIRS ASEPVHCLWG 

        70         80         90        100        110        120 
SWSSWSACDR CSKTQTQIRF VAVFSQFGGQ PCTGSSTRTQ TCISTQVCPL EEGCGGRFRC 

       130        140        150        160        170        180 
QSGKCISLSL VCNSDQDCED GSDEQRCDSK PICKISENTN LQKPPPNVEI TGQGFDAAKR 

       190        200        210        220        230        240 
EARGTVINTK SFGGLCQKTF SGDHKDFYRL PQSVLSYSFQ VTAKNDFTDE SFASSWHYLH 

       250        260        270        280        290        300 
HYEKHEKTTG TDYGHDDYVF HDELSQSKSK NLMIIKSDVE VGQFKNKDPE YLPLSEDFWK 

       310        320        330        340        350        360 
ALVALPVVYD YAAYRNVLER FGTHYISEGS LGGHFKLYLM ASEDVISKLK SEKRDYEDCV 

       370        380        390        400        410        420 
VTSHSVMFFI RWSTKTCKTD TIDETKTFYK SIPESDMKTD IIGGDPGFIA KLSMFYKYDV 

       430        440        450        460        470        480 
KENARTFSQW SGSLKYYPRI IKSKLRSLHE LVKEVPCAGL KRFLLKRAIE TYLTEKHSCQ 

       490        500        510        520        530        540 
CRECQNNGLR VLDGNVCKCV CKPGTSGQAC EYGTAYDEQP GVIHGDWACW SSWSSCSGGQ 

       550        560        570        580        590        600 
KSRRRSCTRP APSGGRDCIG NTEERTACED EEELNHLRSM EPHCFDDSIK PRESCKTPPF 

       610        620        630        640        650        660 
VPNGFVLYPK DVYPVGSKIE YTCIEGYHLI GNAIAKCQED LNWLQYPVEC KKTQCDPPQL 

       670        680        690        700        710        720 
PPDVTANPWK LNYNIGEAIA LSCPEGKVKE GLDEIQCNAG LSWSPQPKNT KCLTAVLKPT 

       730        740        750        760        770        780 
VVPVKCQPWE NLAKDKCVCK VPHQCKSSLE VCVTDEKRGR TQRLSVCKVQ AMRCLGHQYS 

       790        800        810        820        830        840 
LAEDSACQWT QPSTNNCTRC TLGETCDEQT NSCRCKTSED CSSPDTWIHV CVKQDKASAP 

       850        860 
VTMTECEVAM RKCRGETVHI VSIQACQS 

« Hide

References

« Hide 'large scale' references
[1]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Tuebingen Ensembl ENSDARP00000118698.
[2]"The zebrafish reference genome sequence and its relationship to the human genome."
Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J. expand/collapse author list , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Tuebingen Ensembl ENSDARP00000118698.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BX571721 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortalF1QM47.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSDART00000146933; ENSDARP00000118698; ENSDARG00000042172.

Organism-specific databases

ZFINZDB-GENE-081104-392. c7a.

Phylogenomic databases

GeneTreeENSGT00550000074478.
OMAERFGTHY.
OrthoDBEOG7ZSHS9.
TreeFamTF330498.

Family and domain databases

Gene3D4.10.400.10. 1 hit.
InterProIPR023415. LDLR_class-A_CS.
IPR002172. LDrepeatLR_classA_rpt.
IPR001862. MAC_perforin.
IPR020864. MACPF.
IPR020863. MACPF_CS.
IPR000436. Sushi_SCR_CCP.
IPR000884. Thrombospondin_1_rpt.
[Graphical view]
PfamPF00057. Ldl_recept_a. 1 hit.
PF01823. MACPF. 1 hit.
PF00084. Sushi. 2 hits.
PF00090. TSP_1. 2 hits.
[Graphical view]
PRINTSPR00764. COMPLEMENTC9.
SMARTSM00032. CCP. 2 hits.
SM00192. LDLa. 1 hit.
SM00209. TSP1. 2 hits.
[Graphical view]
SUPFAMSSF57424. SSF57424. 1 hit.
SSF57535. SSF57535. 2 hits.
SSF82895. SSF82895. 2 hits.
PROSITEPS01209. LDLRA_1. 1 hit.
PS50068. LDLRA_2. 1 hit.
PS00279. MACPF_1. 1 hit.
PS51412. MACPF_2. 1 hit.
PS50923. SUSHI. 2 hits.
PS50092. TSP1. 2 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF1QM47_DANRE
AccessionPrimary (citable) accession number: F1QM47
Entry history
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: February 19, 2014
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)