F1QC48 (F1QC48_DANRE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Uncharacterized protein Ensembl ENSDARP00000062867

Gene names

Name:

tfdp2 Ensembl ENSDARP00000062867 ZFIN ZDB-GENE-030219-104

Organism

Danio rerio (Zebrafish) (Brachydanio rerio) [Reference proteome] Ensembl ENSDARP00000062867

Taxonomic identifier

7955 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Actinopterygii › Actinopteri › Neopterygii › Teleostei › Elopocephala › Clupeocephala › Otocephala › Ostariophysi › Otophysi › Cypriniphysi › Cypriniformes › Cyprinoidea › Cyprinidae › Danio

Protein attributes

Sequence length	414 AA.
Sequence status	Fragment.
Protein existence	Evidence at transcript level

General annotation (Comments)

Subcellular location	Nucleus By similarity RuleBase RU003796.
Sequence similarities	Belongs to the E2F/DP family. RuleBase RU003796
Caution	The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSDARP00000062867

Ontologies

Keywords
Biological process	Transcription Transcription regulation RuleBase RU003796
Cellular component	Nucleus RuleBase RU003796
Ligand	DNA-binding RuleBase RU003796
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	transcription factor complex Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	1	1	Ensembl ENSDARP00000062867

Sequences

	Sequence		Length	Mass (Da)
	F1QC48 [UniParc]. Last modified May 3, 2011. Version 1. Checksum: 3B4A06E36C1B46D5	FASTA	414	45,922
	10 20 30 40 50 60 LIGDKIGAAA LCGDLKAFLN QNLSKGNISL LTPSSYSPAN KITLGTVNSN VGAQMILSTP 70 80 90 100 110 120 QRVSHSGNIL IGSPFTPHTT PVAMVTQAHP PEGNEWTPGN KKRTHDYIDS YYSDRWDGLC 130 140 150 160 170 180 SSDSSSSKRL KRADKNGKGL RHFSMKVCEK VQKKGTTSYN EVADELVAEF THASSLMPAD 190 200 210 220 230 240 SQVYDQKNIR RRVYDALNVL MAMNIISKEK KEIRWIGLPT NSAQECRNLL IFQLEKQKRL 250 260 270 280 290 300 ERIRQKRAQL EELILQQQVA FKNLVQRNQA SEASSRSSPP AGSVIQLPFI ILNTDVRTVI 310 320 330 340 350 360 DCSISSDKCE YLFNFDNTFE IHDDVEILKR MGMSLGLENG TCSPQNLTLA KSLVPKSLEA 370 380 390 400 410 YITNMARNST RTPLSLTSST ALSHTSESRV LTPSSFNEDD DEDDDDDDSP SSPE

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The genomic sequence of Danio rerio." The Danio rerio Sequencing Project at the Sanger Institute Submitted (JUL-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Tuebingen Ensembl ENSDARP00000062867.
[2]	Ensembl Submitted (JUL-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: Tuebingen Ensembl ENSDARP00000062867.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CT476820 Genomic DNA. No translation available. CU467614 Genomic DNA. No translation available. CU861467 Genomic DNA. No translation available.
IPI	IPI00996277.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSDART00000062868; ENSDARP00000062867; ENSDARG00000042835.
Organism-specific databases
ZFIN	ZDB-GENE-030219-104. tfdp2.
Phylogenomic databases
GeneTree	ENSGT00390000018222.
Gene expression databases
ArrayExpress	F1QC48.
Bgee	F1QC48.
Family and domain databases
Gene3D	1.10.10.10. 1 hit.
InterPro	IPR003316. E2F_TDP. IPR014889. Transc_factor_DP_C. IPR016556. Transcription_factor_DP_subgr. IPR015648. Transcrpt_fac_DP. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
PANTHER	PTHR12548. PTHR12548. 1 hit.
Pfam	PF08781. DP. 1 hit. PF02319. E2F_TDP. 1 hit. [Graphical view]
PIRSF	PIRSF009404. Transcription_factor_DP. 1 hit.
ProtoNet	Search...

Entry information

Entry name

F1QC48_DANRE

Accession

Primary (citable) accession number: F1QC48

Entry history

Integrated into UniProtKB/TrEMBL:	May 3, 2011
Last sequence update:	May 3, 2011
Last modified:	May 1, 2013
This is version 16 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)