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F1NV79

- F1NV79_CHICK

UniProt

F1NV79 - F1NV79_CHICK

Protein
Submitted name:

Uncharacterized protein

Gene

SETDB2

Organism
Gallus gallus (Chicken)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi
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    • History
      Entry version 26 (01 Oct 2014)
      Sequence version 2 (26 Jun 2013)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. DNA binding Source: InterPro
    2. histone methyltransferase activity (H3-K9 specific) Source: Ensembl
    3. zinc ion binding Source: InterPro

    GO - Biological processi

    1. chromosome segregation Source: Ensembl
    2. mitotic nuclear division Source: Ensembl

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    Name:SETDB2Imported
    OrganismiGallus gallus (Chicken)Imported
    Taxonomic identifieri9031 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiTestudines + Archosauria groupArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeGalliformesPhasianidaePhasianinaeGallus
    ProteomesiUP000000539: Chromosome 1

    Subcellular locationi

    Nucleus UniRule annotation
    Nucleus By similarity

    GO - Cellular componenti

    1. chromosome Source: UniProtKB-KW
    2. nucleus Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    ChromosomeSAAS annotation, NucleusUniRule annotationSAAS annotation

    Family & Domainsi

    Sequence similaritiesi

    Contains 1 pre-SET domain.UniRule annotation
    Contains 2 SET domains.UniRule annotation
    Contains SET domain.SAAS annotation
    Contains pre-SET domain.SAAS annotation

    Phylogenomic databases

    GeneTreeiENSGT00750000117355.
    KOiK11421.
    OrthoDBiEOG7ZD1TG.

    Family and domain databases

    Gene3Di3.30.890.10. 1 hit.
    InterProiIPR016177. DNA-bd_dom.
    IPR001739. Methyl_CpG_DNA-bd.
    IPR007728. Pre-SET_dom.
    IPR001214. SET_dom.
    [Graphical view]
    PfamiPF01429. MBD. 1 hit.
    PF05033. Pre-SET. 1 hit.
    PF00856. SET. 2 hits.
    [Graphical view]
    SMARTiSM00317. SET. 1 hit.
    [Graphical view]
    SUPFAMiSSF54171. SSF54171. 1 hit.
    PROSITEiPS50982. MBD. 1 hit.
    PS50867. PRE_SET. 1 hit.
    PS50280. SET. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F1NV79-1 [UniParc]FASTAAdd to Basket

    « Hide

    MEGNRMLRDC PEEKNRITSR KETAEGDLKA FWTQLESRRV DLIFEQVQEV    50
    LLLLKEKIKN GTATNQECWQ AWALVNEADL GDLLTLTNVN DVLDGEDIQE 100
    PKPKSQRVVT DDSSGNSVEG SHSKKEKIEK SDSESEEASS EIQRVPLNPR 150
    YRIHKCSSAC LSNRAVSSYK GENPLKIPIL FHFQRRHAKA DCLSKSLDVH 200
    YKAPCGRSLR SFQDVQSYLF ETKCDFLFID HFSFNTYVLL GRNTVNPEPL 250
    VFDLDISNGA ESVPISFCND IDRARLPYFK YRRASWPRGY YLNNLSSTFL 300
    DSCDCTDGCI DRSKCACLQL TARGCRKVSV SPNAKMSRGY SYKRLEGPVP 350
    SGIYECSVSC RCDKMMCQNR VVQHGIQVRL QVFNTEKKGW GVRCLDDIDK 400
    GTFVCTYSGR LMSRAEVQEL GGADQDLKEE SAVNDRGQSF FSKKRKLDSS 450
    CSDSEIELVL TGKDDILEHQ QSAVNENDST PIHPRNLNTA ATRRLGTRIA 500
    VVDNHQLKME VDTLVHSAGS DEDNSSQPQQ SSETELTSGT NKERSSQKQR 550
    VEDLVEVGQT EPAEMDSAEC RRKSLSLKGV ACGRSDVLND KYVVKPSTKV 600
    LQKADCVEEA HRQAKQGIFC VEADGDRTLL KNANNENIYI LDATKEGNVG 650
    RFLNHSCCPN LFAQSVFVET HNRSFPWVAF FTNRHVRAGT ELTWDYGYEA 700
    GSMPETEISC WCGVQKCRKK TL 722
    Length:722
    Mass (Da):81,381
    Last modified:June 26, 2013 - v2
    Checksum:i1457B8DBD4DB29C2
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AADN03001235 Genomic DNA. No translation available.
    RefSeqiXP_417061.2. XM_417061.3.

    Genome annotation databases

    EnsembliENSGALT00000027470; ENSGALP00000027418; ENSGALG00000017006.
    GeneIDi418866.
    KEGGigga:418866.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AADN03001235 Genomic DNA. No translation available.
    RefSeqi XP_417061.2. XM_417061.3.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSGALT00000027470 ; ENSGALP00000027418 ; ENSGALG00000017006 .
    GeneIDi 418866.
    KEGGi gga:418866.

    Organism-specific databases

    CTDi 83852.

    Phylogenomic databases

    GeneTreei ENSGT00750000117355.
    KOi K11421.
    OrthoDBi EOG7ZD1TG.

    Family and domain databases

    Gene3Di 3.30.890.10. 1 hit.
    InterProi IPR016177. DNA-bd_dom.
    IPR001739. Methyl_CpG_DNA-bd.
    IPR007728. Pre-SET_dom.
    IPR001214. SET_dom.
    [Graphical view ]
    Pfami PF01429. MBD. 1 hit.
    PF05033. Pre-SET. 1 hit.
    PF00856. SET. 2 hits.
    [Graphical view ]
    SMARTi SM00317. SET. 1 hit.
    [Graphical view ]
    SUPFAMi SSF54171. SSF54171. 1 hit.
    PROSITEi PS50982. MBD. 1 hit.
    PS50867. PRE_SET. 1 hit.
    PS50280. SET. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution."
      International Chicken Genome Sequencing Consortium
      Hillier L.W., Miller W., Birney E., Warren W., Hardison R.C., Ponting C.P., Bork P., Burt D.W., Groenen M.A.M., Delany M.E., Dodgson J.B., Chinwalla A.T., Cliften P.F., Clifton S.W., Delehaunty K.D., Fronick C., Fulton R.S., Graves T.A.
      , Kremitzki C., Layman D., Magrini V., McPherson J.D., Miner T.L., Minx P., Nash W.E., Nhan M.N., Nelson J.O., Oddy L.G., Pohl C.S., Randall-Maher J., Smith S.M., Wallis J.W., Yang S.-P., Romanov M.N., Rondelli C.M., Paton B., Smith J., Morrice D., Daniels L., Tempest H.G., Robertson L., Masabanda J.S., Griffin D.K., Vignal A., Fillon V., Jacobbson L., Kerje S., Andersson L., Crooijmans R.P., Aerts J., van der Poel J.J., Ellegren H., Caldwell R.B., Hubbard S.J., Grafham D.V., Kierzek A.M., McLaren S.R., Overton I.M., Arakawa H., Beattie K.J., Bezzubov Y., Boardman P.E., Bonfield J.K., Croning M.D.R., Davies R.M., Francis M.D., Humphray S.J., Scott C.E., Taylor R.G., Tickle C., Brown W.R.A., Rogers J., Buerstedde J.-M., Wilson S.A., Stubbs L., Ovcharenko I., Gordon L., Lucas S., Miller M.M., Inoko H., Shiina T., Kaufman J., Salomonsen J., Skjoedt K., Wong G.K.-S., Wang J., Liu B., Wang J., Yu J., Yang H., Nefedov M., Koriabine M., Dejong P.J., Goodstadt L., Webber C., Dickens N.J., Letunic I., Suyama M., Torrents D., von Mering C., Zdobnov E.M., Makova K., Nekrutenko A., Elnitski L., Eswara P., King D.C., Yang S.-P., Tyekucheva S., Radakrishnan A., Harris R.S., Chiaromonte F., Taylor J., He J., Rijnkels M., Griffiths-Jones S., Ureta-Vidal A., Hoffman M.M., Severin J., Searle S.M.J., Law A.S., Speed D., Waddington D., Cheng Z., Tuzun E., Eichler E., Bao Z., Flicek P., Shteynberg D.D., Brent M.R., Bye J.M., Huckle E.J., Chatterji S., Dewey C., Pachter L., Kouranov A., Mourelatos Z., Hatzigeorgiou A.G., Paterson A.H., Ivarie R., Brandstrom M., Axelsson E., Backstrom N., Berlin S., Webster M.T., Pourquie O., Reymond A., Ucla C., Antonarakis S.E., Long M., Emerson J.J., Betran E., Dupanloup I., Kaessmann H., Hinrichs A.S., Bejerano G., Furey T.S., Harte R.A., Raney B., Siepel A., Kent W.J., Haussler D., Eyras E., Castelo R., Abril J.F., Castellano S., Camara F., Parra G., Guigo R., Bourque G., Tesler G., Pevzner P.A., Smit A., Fulton L.A., Mardis E.R., Wilson R.K.
      Nature 432:695-716(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Red jungle fowlImported.
    2. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Red jungle fowlImported.

    Entry informationi

    Entry nameiF1NV79_CHICK
    AccessioniPrimary (citable) accession number: F1NV79
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 3, 2011
    Last sequence update: June 26, 2013
    Last modified: October 1, 2014
    This is version 26 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3