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F1NV79

- F1NV79_CHICK

UniProt

F1NV79 - F1NV79_CHICK

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Protein
Submitted name: Uncharacterized protein
Gene
SETDB2
Organism
Gallus gallus (Chicken)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

S-adenosyl-L-methionine + L-lysine-[histone] = S-adenosyl-L-homocysteine + N(6)-methyl-L-lysine-[histone].UniRule annotation

GO - Molecular functioni

  1. DNA binding Source: InterPro
  2. histone methyltransferase activity (H3-K9 specific) Source: Ensembl
  3. zinc ion binding Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. chromosome segregation Source: Ensembl
  2. mitotic nuclear division Source: Ensembl
Complete GO annotation...

Keywords - Molecular functioni

MethyltransferaseUniRule annotation, Transferase

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:SETDB2Imported
OrganismiGallus gallus (Chicken)Imported
Taxonomic identifieri9031 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiTestudines + Archosauria groupArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeGalliformesPhasianidaePhasianinaeGallus
ProteomesiUP000000539: Chromosome 1

Subcellular locationi

Nucleus By similarity

GO - Cellular componenti

  1. chromosome Source: UniProtKB-KW
  2. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

ChromosomeSAAS annotations, NucleusUniRule annotationSAAS annotations

Family & Domainsi

Sequence similaritiesi

Contains 1 pre-SET domain.
Contains 2 SET domains.UniRule annotation
Contains SET domain.SAAS annotations
Contains pre-SET domain.SAAS annotations

Phylogenomic databases

GeneTreeiENSGT00750000117355.
KOiK11421.
OrthoDBiEOG7ZD1TG.

Family and domain databases

Gene3Di3.30.890.10. 1 hit.
InterProiIPR016177. DNA-bd_dom.
IPR001739. Methyl_CpG_DNA-bd.
IPR007728. Pre-SET_dom.
IPR001214. SET_dom.
[Graphical view]
PfamiPF01429. MBD. 1 hit.
PF05033. Pre-SET. 1 hit.
PF00856. SET. 2 hits.
[Graphical view]
SMARTiSM00317. SET. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS50982. MBD. 1 hit.
PS50867. PRE_SET. 1 hit.
PS50280. SET. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F1NV79-1 [UniParc]FASTAAdd to Basket

« Hide

MEGNRMLRDC PEEKNRITSR KETAEGDLKA FWTQLESRRV DLIFEQVQEV    50
LLLLKEKIKN GTATNQECWQ AWALVNEADL GDLLTLTNVN DVLDGEDIQE 100
PKPKSQRVVT DDSSGNSVEG SHSKKEKIEK SDSESEEASS EIQRVPLNPR 150
YRIHKCSSAC LSNRAVSSYK GENPLKIPIL FHFQRRHAKA DCLSKSLDVH 200
YKAPCGRSLR SFQDVQSYLF ETKCDFLFID HFSFNTYVLL GRNTVNPEPL 250
VFDLDISNGA ESVPISFCND IDRARLPYFK YRRASWPRGY YLNNLSSTFL 300
DSCDCTDGCI DRSKCACLQL TARGCRKVSV SPNAKMSRGY SYKRLEGPVP 350
SGIYECSVSC RCDKMMCQNR VVQHGIQVRL QVFNTEKKGW GVRCLDDIDK 400
GTFVCTYSGR LMSRAEVQEL GGADQDLKEE SAVNDRGQSF FSKKRKLDSS 450
CSDSEIELVL TGKDDILEHQ QSAVNENDST PIHPRNLNTA ATRRLGTRIA 500
VVDNHQLKME VDTLVHSAGS DEDNSSQPQQ SSETELTSGT NKERSSQKQR 550
VEDLVEVGQT EPAEMDSAEC RRKSLSLKGV ACGRSDVLND KYVVKPSTKV 600
LQKADCVEEA HRQAKQGIFC VEADGDRTLL KNANNENIYI LDATKEGNVG 650
RFLNHSCCPN LFAQSVFVET HNRSFPWVAF FTNRHVRAGT ELTWDYGYEA 700
GSMPETEISC WCGVQKCRKK TL 722
Length:722
Mass (Da):81,381
Last modified:June 26, 2013 - v2
Checksum:i1457B8DBD4DB29C2
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AADN03001235 Genomic DNA. No translation available.
RefSeqiXP_417061.2. XM_417061.3.

Genome annotation databases

EnsembliENSGALT00000027470; ENSGALP00000027418; ENSGALG00000017006.
GeneIDi418866.
KEGGigga:418866.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AADN03001235 Genomic DNA. No translation available.
RefSeqi XP_417061.2. XM_417061.3.

3D structure databases

ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSGALT00000027470 ; ENSGALP00000027418 ; ENSGALG00000017006 .
GeneIDi 418866.
KEGGi gga:418866.

Organism-specific databases

CTDi 83852.

Phylogenomic databases

GeneTreei ENSGT00750000117355.
KOi K11421.
OrthoDBi EOG7ZD1TG.

Family and domain databases

Gene3Di 3.30.890.10. 1 hit.
InterProi IPR016177. DNA-bd_dom.
IPR001739. Methyl_CpG_DNA-bd.
IPR007728. Pre-SET_dom.
IPR001214. SET_dom.
[Graphical view ]
Pfami PF01429. MBD. 1 hit.
PF05033. Pre-SET. 1 hit.
PF00856. SET. 2 hits.
[Graphical view ]
SMARTi SM00317. SET. 1 hit.
[Graphical view ]
SUPFAMi SSF54171. SSF54171. 1 hit.
PROSITEi PS50982. MBD. 1 hit.
PS50867. PRE_SET. 1 hit.
PS50280. SET. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution."
    International Chicken Genome Sequencing Consortium
    Hillier L.W., Miller W., Birney E., Warren W., Hardison R.C., Ponting C.P., Bork P., Burt D.W., Groenen M.A.M., Delany M.E., Dodgson J.B., Chinwalla A.T., Cliften P.F., Clifton S.W., Delehaunty K.D., Fronick C., Fulton R.S., Graves T.A.
    , Kremitzki C., Layman D., Magrini V., McPherson J.D., Miner T.L., Minx P., Nash W.E., Nhan M.N., Nelson J.O., Oddy L.G., Pohl C.S., Randall-Maher J., Smith S.M., Wallis J.W., Yang S.-P., Romanov M.N., Rondelli C.M., Paton B., Smith J., Morrice D., Daniels L., Tempest H.G., Robertson L., Masabanda J.S., Griffin D.K., Vignal A., Fillon V., Jacobbson L., Kerje S., Andersson L., Crooijmans R.P., Aerts J., van der Poel J.J., Ellegren H., Caldwell R.B., Hubbard S.J., Grafham D.V., Kierzek A.M., McLaren S.R., Overton I.M., Arakawa H., Beattie K.J., Bezzubov Y., Boardman P.E., Bonfield J.K., Croning M.D.R., Davies R.M., Francis M.D., Humphray S.J., Scott C.E., Taylor R.G., Tickle C., Brown W.R.A., Rogers J., Buerstedde J.-M., Wilson S.A., Stubbs L., Ovcharenko I., Gordon L., Lucas S., Miller M.M., Inoko H., Shiina T., Kaufman J., Salomonsen J., Skjoedt K., Wong G.K.-S., Wang J., Liu B., Wang J., Yu J., Yang H., Nefedov M., Koriabine M., Dejong P.J., Goodstadt L., Webber C., Dickens N.J., Letunic I., Suyama M., Torrents D., von Mering C., Zdobnov E.M., Makova K., Nekrutenko A., Elnitski L., Eswara P., King D.C., Yang S.-P., Tyekucheva S., Radakrishnan A., Harris R.S., Chiaromonte F., Taylor J., He J., Rijnkels M., Griffiths-Jones S., Ureta-Vidal A., Hoffman M.M., Severin J., Searle S.M.J., Law A.S., Speed D., Waddington D., Cheng Z., Tuzun E., Eichler E., Bao Z., Flicek P., Shteynberg D.D., Brent M.R., Bye J.M., Huckle E.J., Chatterji S., Dewey C., Pachter L., Kouranov A., Mourelatos Z., Hatzigeorgiou A.G., Paterson A.H., Ivarie R., Brandstrom M., Axelsson E., Backstrom N., Berlin S., Webster M.T., Pourquie O., Reymond A., Ucla C., Antonarakis S.E., Long M., Emerson J.J., Betran E., Dupanloup I., Kaessmann H., Hinrichs A.S., Bejerano G., Furey T.S., Harte R.A., Raney B., Siepel A., Kent W.J., Haussler D., Eyras E., Castelo R., Abril J.F., Castellano S., Camara F., Parra G., Guigo R., Bourque G., Tesler G., Pevzner P.A., Smit A., Fulton L.A., Mardis E.R., Wilson R.K.
    Nature 432:695-716(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Red jungle fowlImported.
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Red jungle fowlImported.

Entry informationi

Entry nameiF1NV79_CHICK
AccessioniPrimary (citable) accession number: F1NV79
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: June 26, 2013
Last modified: September 3, 2014
This is version 25 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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