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Protein
Submitted name:

PHD finger protein 21A

Gene

PHF21A

Organism
Gallus gallus (Chicken)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
PHD finger protein 21AImported
Gene namesi
Name:PHF21AImported
OrganismiGallus gallus (Chicken)Imported
Taxonomic identifieri9031 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeGalloanseraeGalliformesPhasianidaePhasianinaeGallus
Proteomesi
  • UP000000539 Componenti: Chromosome 5

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PaxDbiF1NP02.

Expressioni

Gene expression databases

BgeeiENSGALG00000008403.
ExpressionAtlasiF1NP02. baseline and differential.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi9031.ENSGALP00000013674.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini488 – 535PHD-typeInterPro annotationAdd BLAST48

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili30 – 57Sequence analysisAdd BLAST28
Coiled coili562 – 600Sequence analysisAdd BLAST39

Keywords - Domaini

Coiled coilSequence analysis, Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiENOG410IREA. Eukaryota.
ENOG41112YM. LUCA.
GeneTreeiENSGT00530000063984.
OMAiHEDFCTV.
OrthoDBiEOG091G03CB.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
InterProiView protein in InterPro
IPR019786. Zinc_finger_PHD-type_CS.
IPR011011. Znf_FYVE_PHD.
IPR001965. Znf_PHD.
IPR019787. Znf_PHD-finger.
IPR013083. Znf_RING/FYVE/PHD.
PfamiView protein in Pfam
PF00628. PHD. 1 hit.
SMARTiView protein in SMART
SM00249. PHD. 1 hit.
SUPFAMiSSF57903. SSF57903. 1 hit.
PROSITEiView protein in PROSITE
PS01359. ZF_PHD_1. 1 hit.
PS50016. ZF_PHD_2. 1 hit.

Sequencei

Sequence statusi: Complete.

F1NP02-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MELQTLQEAL KVEIQVHQKL VAQMKQDPQN ADLKKQLHEL QAKITALSEK
60 70 80 90 100
QKRVVEQLRK NLIVKQEQPD SKFQIQPLAQ SENKLQTPQP QPLQQLQQHH
110 120 130 140 150
HQQQQQSTAP SPNVIGSQKT VTTASMITTK TLPLVLKAAT ATMPASVVGQ
160 170 180 190 200
RPTIAMVTAI NNNQKAVLST DAQNAPVNLQ TTNKVTGPGA ETVQIVAKNT
210 220 230 240 250
VTLQVQATPQ PIKVPQFIPP PRLTPRPNFL PQVRPKPVAQ NNIPIAPAPP
260 270 280 290 300
PMLAAPQLIQ RPVMLTTKFT PTSLPNSQNS IHPVRVVNGQ TATIAKTFPM
310 320 330 340 350
AQLTSIVIAA PGTRLAGPQT VQISKPNVEK QTIKPHVEAE EKQTESRTVT
360 370 380 390 400
PPAAPKPKRE ENPQKLAFMV SLGLVTHDHL EEIQSKRQER KRRTTANPVY
410 420 430 440 450
SGAVFEPERK KSAVTYLNST MHPGTRKRGR PPKYNTVLGF GALTPTSPLS
460 470 480 490 500
SYPDSPENEK TETTFTFPAA VQPVSLPSPS STDGDIHEDF CSVCRKSGQL
510 520 530 540 550
LMCDTCSRVY HLDCLDPPLK TIPKGMWICP KCQDQMLKKE EAIPWPGTLA
560 570 580 590 600
IVHSYIAYKA AKEEEKQKLL KWSSDLKQER EQLEQKVKQL SNSITKCMEM
610 620 630 640 650
KNTILAKQKE MHSSLEKVKQ LIRLIQGIDL SKPINSEVNS VAISNGMDST
660 670
NNTNAATSTL APSPSQSCMV NCNKGDETK
Length:679
Mass (Da):74,928
Last modified:June 26, 2013 - v2
Checksum:iB1A9011A6CB5F1B3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AADN04000062 Genomic DNA. No translation available.
RefSeqiNP_001186576.1. NM_001199647.1.
UniGeneiGga.27412.

Genome annotation databases

EnsembliENSGALT00000030514; ENSGALP00000029877; ENSGALG00000008403.
GeneIDi423199.

Similar proteinsi

Entry informationi

Entry nameiF1NP02_CHICK
AccessioniPrimary (citable) accession number: F1NP02
Entry historyiIntegrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: June 26, 2013
Last modified: September 27, 2017
This is version 43 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported