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F1NMC6 (F1NMC6_CHICK) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 15. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Uncharacterized protein Ensembl ENSGALP00000021535
Gene names
Name:ELP2 Ensembl ENSGALP00000021535
OrganismGallus gallus (Chicken) [Reference proteome] Ensembl ENSGALP00000021535
Taxonomic identifier9031 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Archosauria › Dinosauria › Saurischia › Theropoda › Coelurosauria › Aves › Neognathae › Galliformes › Phasianidae › Phasianinae › Gallus

Protein attributes

Sequence length822 AA.
Sequence statusFragment.
Protein existencePredicted

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSGALP00000021535

Ontologies

Keywords
   DomainRepeat RuleBase RU003532
WD repeat RuleBase RU000362
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processregulation of JAK-STAT cascade

Inferred from electronic annotation. Source: Compara

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: Compara

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 Ensembl ENSGALP00000021535

Sequences

Sequence LengthMass (Da)Tools
F1NMC6 [UniParc].

Last modified May 3, 2011. Version 1.
Checksum: 088BB4CCDDBDCECF

FASTA82291,657
        10         20         30         40         50         60 
KMAAPVSVCH VACCANRVGG GVVSWGREGL LAFGSCRDVV LYQPAARRTV AALRGHGGRV 

        70         80         90        100        110        120 
SCVRWIRRRD GATETELVSG ASDKKLILWE WNRNQLVKSV PLEGHTEAVC AVDAIYQSDE 

       130        140        150        160        170        180 
PDLNLLIASA ASDSTVRIWS RHDSEVKCIE VLQFGNGFVM DVSLSFLPGS NVPILACGGD 

       190        200        210        220        230        240 
DCKINLFIQQ NGQFQKTLTL PGHEDWIRGV EWAICGDDLF LASCAQDCLI RIWKVCTKSK 

       250        260        270        280        290        300 
QFSEIEDDSI RLKENIFTVK DTDTTYAITL ESVLAGHENW VYAVHWQPSF SKGGSMQQPM 

       310        320        330        340        350        360 
RILSASMDKT VIIWEPDKES GVWLEQVRVG EVGGNTLGFF DCQFSPDGSM IIAHAFHGAF 

       370        380        390        400        410        420 
HLWKQASVSK KEWTPEVVIS GHFNSVEDVQ WDPEGEFIIS VGSDQTTRLF APWKRKDETE 

       430        440        450        460        470        480 
VTWHEIARPQ VHGYDMRCLA MIGRFQFVSG ADEKVLRVFC APKNFIENFS NITGIPMEKL 

       490        500        510        520        530        540 
CSRLSSDLPE GATVPALGLS NKAVFEGDIS AQVAEDEETF NTISNQYPEI YFQPLILTEP 

       550        560        570        580        590        600 
PQEDHLLQNT LWPEVQKLYG HGYEIFCVAC NNSNTVIASA CKASKKEHAA IILWSTSSWK 

       610        620        630        640        650        660 
KIQSLPFHNL TVTQLAFSPN DKLLLAVSRD RNWSLWREED SSESGPVFSC CAYTDKNTAV 

       670        680        690        700        710        720 
HSRIIWSCDW TPDSKYFVTG SRDKKVIIWG QCDLPVTTEG IVLDSIKPCS TVLDAGDSVT 

       730        740        750        760        770        780 
AVSISRVLTP DGRYVVAIGL ENGKINFYTW KQSGQEPSVA DWTKCVEMDN SQSHALAVKR 

       790        800        810        820 
LCWRHREGRA GHNDENNSEW LQLASCGADH CVKIFNVNRF AL

« Hide

References

« Hide 'large scale' references
[1]"Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution."
International Chicken Genome Sequencing Consortium
Hillier L.W., Miller W., Birney E., Warren W., Hardison R.C., Ponting C.P., Bork P., Burt D.W., Groenen M.A.M., Delany M.E., Dodgson J.B., Chinwalla A.T., Cliften P.F., Clifton S.W., Delehaunty K.D., Fronick C., Fulton R.S., Graves T.A. expand/collapse author list , Kremitzki C., Layman D., Magrini V., McPherson J.D., Miner T.L., Minx P., Nash W.E., Nhan M.N., Nelson J.O., Oddy L.G., Pohl C.S., Randall-Maher J., Smith S.M., Wallis J.W., Yang S.-P., Romanov M.N., Rondelli C.M., Paton B., Smith J., Morrice D., Daniels L., Tempest H.G., Robertson L., Masabanda J.S., Griffin D.K., Vignal A., Fillon V., Jacobbson L., Kerje S., Andersson L., Crooijmans R.P., Aerts J., van der Poel J.J., Ellegren H., Caldwell R.B., Hubbard S.J., Grafham D.V., Kierzek A.M., McLaren S.R., Overton I.M., Arakawa H., Beattie K.J., Bezzubov Y., Boardman P.E., Bonfield J.K., Croning M.D.R., Davies R.M., Francis M.D., Humphray S.J., Scott C.E., Taylor R.G., Tickle C., Brown W.R.A., Rogers J., Buerstedde J.-M., Wilson S.A., Stubbs L., Ovcharenko I., Gordon L., Lucas S., Miller M.M., Inoko H., Shiina T., Kaufman J., Salomonsen J., Skjoedt K., Wong G.K.-S., Wang J., Liu B., Wang J., Yu J., Yang H., Nefedov M., Koriabine M., Dejong P.J., Goodstadt L., Webber C., Dickens N.J., Letunic I., Suyama M., Torrents D., von Mering C., Zdobnov E.M., Makova K., Nekrutenko A., Elnitski L., Eswara P., King D.C., Yang S., Tyekucheva S., Radakrishnan A., Harris R.S., Chiaromonte F., Taylor J., He J., Rijnkels M., Griffiths-Jones S., Ureta-Vidal A., Hoffman M.M., Severin J., Searle S.M.J., Law A.S., Speed D., Waddington D., Cheng Z., Tuzun E., Eichler E., Bao Z., Flicek P., Shteynberg D.D., Brent M.R., Bye J.M., Huckle E.J., Chatterji S., Dewey C., Pachter L., Kouranov A., Mourelatos Z., Hatzigeorgiou A.G., Paterson A.H., Ivarie R., Brandstrom M., Axelsson E., Backstrom N., Berlin S., Webster M.T., Pourquie O., Reymond A., Ucla C., Antonarakis S.E., Long M., Emerson J.J., Betran E., Dupanloup I., Kaessmann H., Hinrichs A.S., Bejerano G., Furey T.S., Harte R.A., Raney B., Siepel A., Kent W.J., Haussler D., Eyras E., Castelo R., Abril J.F., Castellano S., Camara F., Parra G., Guigo R., Bourque G., Tesler G., Pevzner P.A., Smit A., Fulton L.A., Mardis E.R., Wilson R.K.
Nature 432:695-716(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Red jungle fowl Ensembl ENSGALP00000021535.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Red jungle fowl Ensembl ENSGALP00000021535.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AADN02008271 Genomic DNA. No translation available.
IPIIPI00593505.

3D structure databases

ProteinModelPortalF1NMC6.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSGALT00000021568; ENSGALP00000021535; ENSGALG00000013203.

Phylogenomic databases

GeneTreeENSGT00390000000916.
OMADCLIRIW.

Family and domain databases

Gene3D2.130.10.10. 4 hits.
InterProIPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamPF00400. WD40. 8 hits.
[Graphical view]
SMARTSM00320. WD40. 12 hits.
[Graphical view]
SUPFAMSSF50978. WD40_like. 2 hits.
PROSITEPS50082. WD_REPEATS_2. 5 hits.
PS50294. WD_REPEATS_REGION. 2 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF1NMC6_CHICK
AccessionPrimary (citable) accession number: F1NMC6
Entry history
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: April 3, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info