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Protein

Tetraspanin

Gene

TSPAN1

Organism
Gallus gallus (Chicken)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
TetraspaninUniRule annotation
Gene namesi
Name:TSPAN1Imported
OrganismiGallus gallus (Chicken)Imported
Taxonomic identifieri9031 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeGalloanseraeGalliformesPhasianidaePhasianinaeGallus
Proteomesi
  • UP000000539 Componenti: Chromosome 8

Subcellular locationi

  • Membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei12 – 3423HelicalUniRule annotationAdd
BLAST
Transmembranei54 – 7320HelicalUniRule annotationAdd
BLAST
Transmembranei85 – 11026HelicalUniRule annotationAdd
BLAST
Transmembranei209 – 23527HelicalUniRule annotationAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

PaxDbiF1NBL2.

Expressioni

Gene expression databases

BgeeiENSGALG00000010343.

Interactioni

Protein-protein interaction databases

STRINGi9031.ENSGALP00000016821.

Family & Domainsi

Sequence similaritiesi

Belongs to the tetraspanin (TM4SF) family.UniRule annotationSAAS annotation

Keywords - Domaini

Transmembrane, Transmembrane helixUniRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG3882. Eukaryota.
ENOG4111IRY. LUCA.
GeneTreeiENSGT00760000118983.
InParanoidiF1NBL2.
OMAiFTQVWNT.
OrthoDBiEOG091G0PTV.
TreeFamiTF352892.

Family and domain databases

InterProiIPR000301. Tetraspanin.
IPR018499. Tetraspanin/Peripherin.
IPR018503. Tetraspanin_CS.
IPR008952. Tetraspanin_EC2.
[Graphical view]
PfamiPF00335. Tetraspannin. 1 hit.
[Graphical view]
PIRSFiPIRSF002419. Tetraspanin. 1 hit.
PRINTSiPR00259. TMFOUR.
SUPFAMiSSF48652. SSF48652. 1 hit.
PROSITEiPS00421. TM4_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F1NBL2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGCFTFIKVM MILFNLAIFL GGGTLLGIGI WVSVDGKSFL DIFGTLSSSI
60 70 80 90 100
MQVVNVSYFL IVIGAILVVI GFLGCCGAQK ESKCLLMMFF SVVLIIFIAE
110 120 130 140 150
IAAAVVVLVY TGLAETFLTA LVTPVLKEKY GEDDALTQIW NVTMSEVHCC
160 170 180 190 200
GLNNYTDFEG SPWYLENNHT FPGPCCKSTV PCTNTLAAQT NVSGCFDQIL
210 220 230
EEIRTNADVV GGVAAGIAAL EVAAMVVSMY LYCYLDKK
Length:238
Mass (Da):25,664
Last modified:June 26, 2013 - v2
Checksum:i0141E402ACA7541E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AADN03005616 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSGALT00000016840; ENSGALP00000016821; ENSGALG00000010343.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AADN03005616 Genomic DNA. No translation available.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9031.ENSGALP00000016821.

Proteomic databases

PaxDbiF1NBL2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSGALT00000016840; ENSGALP00000016821; ENSGALG00000010343.

Phylogenomic databases

eggNOGiKOG3882. Eukaryota.
ENOG4111IRY. LUCA.
GeneTreeiENSGT00760000118983.
InParanoidiF1NBL2.
OMAiFTQVWNT.
OrthoDBiEOG091G0PTV.
TreeFamiTF352892.

Gene expression databases

BgeeiENSGALG00000010343.

Family and domain databases

InterProiIPR000301. Tetraspanin.
IPR018499. Tetraspanin/Peripherin.
IPR018503. Tetraspanin_CS.
IPR008952. Tetraspanin_EC2.
[Graphical view]
PfamiPF00335. Tetraspannin. 1 hit.
[Graphical view]
PIRSFiPIRSF002419. Tetraspanin. 1 hit.
PRINTSiPR00259. TMFOUR.
SUPFAMiSSF48652. SSF48652. 1 hit.
PROSITEiPS00421. TM4_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiF1NBL2_CHICK
AccessioniPrimary (citable) accession number: F1NBL2
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: June 26, 2013
Last modified: September 7, 2016
This is version 32 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.