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Protein

Tetraspanin

Gene

TSPAN1

Organism
Gallus gallus (Chicken)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
TetraspaninUniRule annotation
Gene namesi
Name:TSPAN1Imported
OrganismiGallus gallus (Chicken)Imported
Taxonomic identifieri9031 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeGalloanseraeGalliformesPhasianidaePhasianinaeGallus
Proteomesi
  • UP000000539 Componenti: Chromosome 8

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei12 – 34HelicalUniRule annotationAdd BLAST23
Transmembranei54 – 73HelicalUniRule annotationAdd BLAST20
Transmembranei85 – 110HelicalUniRule annotationAdd BLAST26
Transmembranei209 – 235HelicalUniRule annotationAdd BLAST27

Keywords - Cellular componenti

Membrane

Expressioni

Gene expression databases

BgeeiENSGALG00000010343

Interactioni

Protein-protein interaction databases

STRINGi9031.ENSGALP00000016821

Family & Domainsi

Sequence similaritiesi

Belongs to the tetraspanin (TM4SF) family.UniRule annotationSAAS annotation

Keywords - Domaini

Transmembrane, Transmembrane helixUniRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG3882 Eukaryota
ENOG4111IRY LUCA
GeneTreeiENSGT00880000137858
InParanoidiF1NBL2
OMAiCGFTNYT
OrthoDBiEOG091G0PTV
TreeFamiTF352892

Family and domain databases

Gene3Di1.10.1450.10, 1 hit
InterProiView protein in InterPro
IPR000301 Tetraspanin
IPR018499 Tetraspanin/Peripherin
IPR018503 Tetraspanin_CS
IPR008952 Tetraspanin_EC2_sf
PfamiView protein in Pfam
PF00335 Tetraspannin, 1 hit
PIRSFiPIRSF002419 Tetraspanin, 1 hit
PRINTSiPR00259 TMFOUR
SUPFAMiSSF48652 SSF48652, 1 hit
PROSITEiView protein in PROSITE
PS00421 TM4_1, 1 hit

Sequencei

Sequence statusi: Complete.

F1NBL2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGCFTFIKVM MILFNLAIFL GGGTLLGIGI WVSVDGKSFL DIFGTLSSSI
60 70 80 90 100
MQVVNVSYFL IVIGAILVVI GFLGCCGAQK ESKCLLMMFF SVVLIIFIAE
110 120 130 140 150
IAAAVVVLVY TGLAETFLTA LVTPVLKEKY GEDDALTQIW NVTMSEVHCC
160 170 180 190 200
GLNNYTDFEG SPWYLENNHT FPGPCCKSTV PCTNTLAAQT NVSGCFDQIL
210 220 230
EEIRTNADVV GGVAAGIAAL EVAAMVVSMY LYCYLDKK
Length:238
Mass (Da):25,664
Last modified:June 26, 2013 - v2
Checksum:i0141E402ACA7541E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AADN04000033 Genomic DNA No translation available.

Genome annotation databases

EnsembliENSGALT00000016840; ENSGALP00000016821; ENSGALG00000010343
ENSGALT00000089076; ENSGALP00000061030; ENSGALG00000010343

Similar proteinsi

Entry informationi

Entry nameiF1NBL2_CHICK
AccessioniPrimary (citable) accession number: F1NBL2
Entry historyiIntegrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: June 26, 2013
Last modified: March 28, 2018
This is version 41 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health