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F1MSR8

- F1MSR8_BOVIN

UniProt

F1MSR8 - F1MSR8_BOVIN

Protein
Submitted name:

Collagen alpha-1(II) chain

Gene

COL2A1

Organism
Bos taurus (Bovine)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 19 (01 Oct 2014)
      Sequence version 2 (16 Nov 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. extracellular matrix structural constituent Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Collagen alpha-1(II) chainImported
    Gene namesi
    Name:COL2A1Imported
    OrganismiBos taurus (Bovine)Imported
    Taxonomic identifieri9913 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaRuminantiaPecoraBovidaeBovinaeBos
    ProteomesiUP000009136: Chromosome 5

    Subcellular locationi

    GO - Cellular componenti

    1. collagen trimer Source: InterPro

    PTM / Processingi

    Proteomic databases

    PRIDEiF1MSR8.

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00740000114967.
    KOiK06236.
    OrthoDBiEOG7TJ3HH.

    Family and domain databases

    InterProiIPR008160. Collagen.
    IPR000885. Fib_collagen_C.
    [Graphical view]
    PfamiPF01410. COLFI. 1 hit.
    PF01391. Collagen. 8 hits.
    [Graphical view]
    ProDomiPD002078. Fib_collagen_C. 1 hit.
    [Graphical view] [Entries sharing at least one domain]
    SMARTiSM00038. COLFI. 1 hit.
    [Graphical view]
    PROSITEiPS51461. NC1_FIB. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F1MSR8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MIRLGAPQTL VLLTLLVAAV LRCHGQDVRQ PGPKGQKGEP GDIKDIVGPK     50
    GPPGPQGPAG EQGPRGDRGD KGEKGAPGPR GRDGEPGTPG NPGPPGPPGP 100
    PGPPGLGGNF AAQMAGGFDE KAGGAQMGVM QGPMGPMGPR GPPGPAGAPG 150
    PQGFQGNPGE PGEPGVSGPM GPRGPPGPPG KPGDDGEAGK PGKSGERGPP 200
    GPQGARGFPG TPGLPGVKGH RGYPGLDGAK GEAGAPGVKG ESGSPGENGS 250
    PGPMGPRGLP GERGRTGPAG AAGARGNDGQ PGPAGPPGPV GPAGGPGFPG 300
    APGAKGEAGP TGARGPEGAQ GPRGEPGTPG SPGPAGAAGN PGTDGIPGAK 350
    GSAGAPGIAG APGFPGPRGP PGPQGATGPL GPKGQTGEPG IAGFKGEQGP 400
    KGEPGPAGPQ GAPGPAGEEG KRGARGEPGG AGPAGPPGER GAPGNRGFPG 450
    QDGLAGPKGA PGERGPSGLA GPKGANGDPG RPGEPGLPGA RGLTGRPGDA 500
    GPQGKVGPSG APGEDGRPGP PGPQGARGQP GVMGFPGPKG ANGEPGKAGE 550
    KGLPGAPGLR GLPGKDGETG AAGPPGPAGP AGERGEQGAP GPSGFQGLPG 600
    PPGPPGEGGK PGDQGVPGEA GAPGLVGPRG ERGFPGERGS PGSQGLQGAR 650
    GLPGTPGTDG PKGAAGPAGP PGAQGPPGLQ GMPGERGAAG IAGPKGDRGD 700
    VGEKGPEGAP GKDGGRGLTG PIGPPGPAGA NGEKGEVGPP GPAGTAGARG 750
    APGERGETGP PGPAGFAGPP GADGQPGAKG EQGEAGQKGD AGAPGPQGPS 800
    GAPGPQGPTG VTGPKGARGA QGPPGATGFP GAAGRVGPPG SNGNPGPPGP 850
    PGPSGKDGPK GARGDSGPPG RAGDPGLQGP AGPPGEKGEP GDDGPSGPDG 900
    PPGPQGLAGQ RGIVGLPGQR GERGFPGLPG PSGEPGKQGA PGASGDRGPP 950
    GPVGPPGLTG PAGEPGREGS PGADGPPGRD GAAGVKGDRG ETGAVGAPGA 1000
    PGPPGSPGPA GPIGKQGDRG EAGAQGPMGP AGPAGARGMP GPQGPRGDKG 1050
    ETGEAGERGL KGHRGFTGLQ GLPGPPGPSG DQGASGPAGP SGPRGPPGPV 1100
    GPSGKDGANG IPGPIGPPGP RGRSGETGPA GPPGNPGPPG PPGPPGPGID 1150
    MSAFAGLGQR EKGPDPLQYM RADEAAGNLR QHDAEVDATL KSLNNQIESL 1200
    RSPEGSRKNP ARTCRDLKLC HPEWKSGDYW IDPNQGCTLD AMKVFCNMET 1250
    GETCVYPNPA SVPKKNWWSS KSKDKKHIWF GETINGGFHF SYGDDNLAPN 1300
    TANVQMTFLR LLSTEGSQNI TYHCKNSIAY LDEAAGNLKK ALLIQGSNDV 1350
    EIRAEGNSRF TYTVLKDGCT KHTGKWGKTM IEYRSQKTSR LPIIDIAPMD 1400
    IGGPEQEFGV DIGPVCFL 1418
    Length:1,418
    Mass (Da):134,427
    Last modified:November 16, 2011 - v2
    Checksum:i95045FA20C8B2A39
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DAAA02012985 Genomic DNA. No translation available.
    DAAA02012986 Genomic DNA. No translation available.
    RefSeqiNP_001106695.1. NM_001113224.1.
    UniGeneiBt.21390.

    Genome annotation databases

    EnsembliENSBTAT00000017509; ENSBTAP00000017509; ENSBTAG00000013155.
    GeneIDi407142.
    KEGGibta:407142.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DAAA02012985 Genomic DNA. No translation available.
    DAAA02012986 Genomic DNA. No translation available.
    RefSeqi NP_001106695.1. NM_001113224.1.
    UniGenei Bt.21390.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi F1MSR8.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSBTAT00000017509 ; ENSBTAP00000017509 ; ENSBTAG00000013155 .
    GeneIDi 407142.
    KEGGi bta:407142.

    Organism-specific databases

    CTDi 1280.

    Phylogenomic databases

    GeneTreei ENSGT00740000114967.
    KOi K06236.
    OrthoDBi EOG7TJ3HH.

    Miscellaneous databases

    NextBioi 20818406.

    Family and domain databases

    InterProi IPR008160. Collagen.
    IPR000885. Fib_collagen_C.
    [Graphical view ]
    Pfami PF01410. COLFI. 1 hit.
    PF01391. Collagen. 8 hits.
    [Graphical view ]
    ProDomi PD002078. Fib_collagen_C. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    SMARTi SM00038. COLFI. 1 hit.
    [Graphical view ]
    PROSITEi PS51461. NC1_FIB. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HerefordImported.
    2. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: HerefordImported.

    Entry informationi

    Entry nameiF1MSR8_BOVIN
    AccessioniPrimary (citable) accession number: F1MSR8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 3, 2011
    Last sequence update: November 16, 2011
    Last modified: October 1, 2014
    This is version 19 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3