F1MSR8 (F1MSR8_BOVIN) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Collagen alpha-1(II) chain Ensembl ENSBTAP00000017509

Gene names

Name:

COL2A1 Ensembl ENSBTAP00000017509

Organism

Bos taurus (Bovine) [Reference proteome] Ensembl ENSBTAP00000017509

Taxonomic identifier

9913 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Laurasiatheria › Cetartiodactyla › Ruminantia › Pecora › Bovidae › Bovinae › Bos

Protein attributes

Sequence length	1418 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSBTAP00000017509

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Cellular_component	collagen Inferred from electronic annotation. Source: InterPro
Molecular_function	extracellular matrix structural constituent Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F1MSR8 [UniParc]. Last modified November 16, 2011. Version 2. Checksum: 95045FA20C8B2A39	FASTA	1,418	134,427
	10 20 30 40 50 60 MIRLGAPQTL VLLTLLVAAV LRCHGQDVRQ PGPKGQKGEP GDIKDIVGPK GPPGPQGPAG 70 80 90 100 110 120 EQGPRGDRGD KGEKGAPGPR GRDGEPGTPG NPGPPGPPGP PGPPGLGGNF AAQMAGGFDE 130 140 150 160 170 180 KAGGAQMGVM QGPMGPMGPR GPPGPAGAPG PQGFQGNPGE PGEPGVSGPM GPRGPPGPPG 190 200 210 220 230 240 KPGDDGEAGK PGKSGERGPP GPQGARGFPG TPGLPGVKGH RGYPGLDGAK GEAGAPGVKG 250 260 270 280 290 300 ESGSPGENGS PGPMGPRGLP GERGRTGPAG AAGARGNDGQ PGPAGPPGPV GPAGGPGFPG 310 320 330 340 350 360 APGAKGEAGP TGARGPEGAQ GPRGEPGTPG SPGPAGAAGN PGTDGIPGAK GSAGAPGIAG 370 380 390 400 410 420 APGFPGPRGP PGPQGATGPL GPKGQTGEPG IAGFKGEQGP KGEPGPAGPQ GAPGPAGEEG 430 440 450 460 470 480 KRGARGEPGG AGPAGPPGER GAPGNRGFPG QDGLAGPKGA PGERGPSGLA GPKGANGDPG 490 500 510 520 530 540 RPGEPGLPGA RGLTGRPGDA GPQGKVGPSG APGEDGRPGP PGPQGARGQP GVMGFPGPKG 550 560 570 580 590 600 ANGEPGKAGE KGLPGAPGLR GLPGKDGETG AAGPPGPAGP AGERGEQGAP GPSGFQGLPG 610 620 630 640 650 660 PPGPPGEGGK PGDQGVPGEA GAPGLVGPRG ERGFPGERGS PGSQGLQGAR GLPGTPGTDG 670 680 690 700 710 720 PKGAAGPAGP PGAQGPPGLQ GMPGERGAAG IAGPKGDRGD VGEKGPEGAP GKDGGRGLTG 730 740 750 760 770 780 PIGPPGPAGA NGEKGEVGPP GPAGTAGARG APGERGETGP PGPAGFAGPP GADGQPGAKG 790 800 810 820 830 840 EQGEAGQKGD AGAPGPQGPS GAPGPQGPTG VTGPKGARGA QGPPGATGFP GAAGRVGPPG 850 860 870 880 890 900 SNGNPGPPGP PGPSGKDGPK GARGDSGPPG RAGDPGLQGP AGPPGEKGEP GDDGPSGPDG 910 920 930 940 950 960 PPGPQGLAGQ RGIVGLPGQR GERGFPGLPG PSGEPGKQGA PGASGDRGPP GPVGPPGLTG 970 980 990 1000 1010 1020 PAGEPGREGS PGADGPPGRD GAAGVKGDRG ETGAVGAPGA PGPPGSPGPA GPIGKQGDRG 1030 1040 1050 1060 1070 1080 EAGAQGPMGP AGPAGARGMP GPQGPRGDKG ETGEAGERGL KGHRGFTGLQ GLPGPPGPSG 1090 1100 1110 1120 1130 1140 DQGASGPAGP SGPRGPPGPV GPSGKDGANG IPGPIGPPGP RGRSGETGPA GPPGNPGPPG 1150 1160 1170 1180 1190 1200 PPGPPGPGID MSAFAGLGQR EKGPDPLQYM RADEAAGNLR QHDAEVDATL KSLNNQIESL 1210 1220 1230 1240 1250 1260 RSPEGSRKNP ARTCRDLKLC HPEWKSGDYW IDPNQGCTLD AMKVFCNMET GETCVYPNPA 1270 1280 1290 1300 1310 1320 SVPKKNWWSS KSKDKKHIWF GETINGGFHF SYGDDNLAPN TANVQMTFLR LLSTEGSQNI 1330 1340 1350 1360 1370 1380 TYHCKNSIAY LDEAAGNLKK ALLIQGSNDV EIRAEGNSRF TYTVLKDGCT KHTGKWGKTM 1390 1400 1410 IEYRSQKTSR LPIIDIAPMD IGGPEQEFGV DIGPVCFL

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"A whole-genome assembly of the domestic cow, Bos taurus." Zimin A.V., Delcher A.L., Florea L., Kelley D.R., Schatz M.C., Puiu D., Hanrahan F., Pertea G., Van Tassell C.P., Sonstegard T.S., Marcais G., Roberts M., Subramanian P., Yorke J.A., Salzberg S.L. Genome Biol. 10:R42-R42(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Hereford Ensembl ENSBTAP00000017509.
[2]	Ensembl Submitted (JUL-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: Hereford Ensembl ENSBTAP00000017509.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	DAAA02012985 Genomic DNA. No translation available. DAAA02012986 Genomic DNA. No translation available.
IPI	IPI00786510.
RefSeq	NP_001106695.1. NM_001113224.1.
UniGene	Bt.21390.
3D structure databases
ModBase	Search...
Proteomic databases
PRIDE	F1MSR8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSBTAT00000017509; ENSBTAP00000017509; ENSBTAG00000013155.
GeneID	407142.
KEGG	bta:407142.
Organism-specific databases
CTD	1280.
Phylogenomic databases
GeneTree	ENSGT00660000095287.
KO	K06236.
Gene expression databases
ArrayExpress	F1MSR8.
Family and domain databases
InterPro	IPR008160. Collagen. IPR000885. Fib_collagen_C. [Graphical view]
Pfam	PF01410. COLFI. 1 hit. PF01391. Collagen. 8 hits. [Graphical view]
ProDom	PD002078. Fib_collagen_C. 1 hit. [Graphical view] [Entries sharing at least one domain]
SMART	SM00038. COLFI. 1 hit. [Graphical view]
PROSITE	PS51461. NC1_FIB. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	20818406.

Entry information

Entry name

F1MSR8_BOVIN

Accession

Primary (citable) accession number: F1MSR8

Entry history

Integrated into UniProtKB/TrEMBL:	May 3, 2011
Last sequence update:	November 16, 2011
Last modified:	April 3, 2013
This is version 12 of the entry and version 2 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)