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F1MC25 (F1MC25_BOVIN) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Uncharacterized protein Ensembl ENSBTAP00000015947
Gene names
Name:LMX1A Ensembl ENSBTAP00000015947
OrganismBos taurus (Bovine) [Reference proteome] Ensembl ENSBTAP00000015947
Taxonomic identifier9913 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Laurasiatheria › Cetartiodactyla › Ruminantia › Pecora › Bovidae › Bovinae › Bos

Protein attributes

Sequence length382 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Subcellular location

Nucleus By similarity RuleBase RU000682.

Sequence similarities

Contains 1 homeobox DNA-binding domain. SAAS SAAS001781

Contains 2 LIM zinc-binding domains. RuleBase RU000350 SAAS SAAS001781

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSBTAP00000015947

Sequences

Sequence LengthMass (Da)Tools
F1MC25 [UniParc].

Last modified November 16, 2011. Version 2.
Checksum: C028626E55EC3DF7

FASTA38242,739
        10         20         30         40         50         60 
MLDGLKMEEN FQSAIETSAS FSSLLGRAVS PKSVCEGCQR VISDRFLLRL NDSFWHEQCV 

        70         80         90        100        110        120 
QCASCKEPLE TTCFYRDKKL YCKYDYEKLF AVKCGGCFEA IAPNEFVMRA QKSVYHLSCF 

       130        140        150        160        170        180 
CCCVCERQLQ KGDEFVLKEG QLLCKGDYEK ERELLSLVSP AASDSGKSDD EESLCKSAHG 

       190        200        210        220        230        240 
AGKGASEDSK DHKRPKRPRT ILTTQQRRAF KASFEVSSKP CRKVRETLAA ETGLSVRVVQ 

       250        260        270        280        290        300 
VWFQNQRAKM KKLARRQQQQ QQDQQNTQRL SSAQTNGGGS AGMEGIMNPY TALPTSQQLL 

       310        320        330        340        350        360 
AIEQSVYSSD PFRQGLTPPQ MPGDHMHPYG AEPLFHELDS EDTSLSNLGD CFLATSEAGP 

       370        380 
LQARVGNPID HLYSMQNSYF TS

« Hide

References

« Hide 'large scale' references
[1]"A whole-genome assembly of the domestic cow, Bos taurus."
Zimin A.V., Delcher A.L., Florea L., Kelley D.R., Schatz M.C., Puiu D., Hanrahan F., Pertea G., Van Tassell C.P., Sonstegard T.S., Marcais G., Roberts M., Subramanian P., Yorke J.A., Salzberg S.L.
Genome Biol. 10:R42-R42(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Hereford Ensembl ENSBTAP00000015947.
[2]Ensembl
Submitted (MAY-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Hereford Ensembl ENSBTAP00000015947.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		DAAA02006817 Genomic DNA. No translation available.
DAAA02006818 Genomic DNA. No translation available.
DAAA02006819 Genomic DNA. No translation available.
DAAA02006820 Genomic DNA. No translation available.
DAAA02006821 Genomic DNA. No translation available.
DAAA02006822 Genomic DNA. No translation available.
IPIIPI00701360.
RefSeqNP_001178254.1. NM_001191325.1.
UniGeneBt.106456.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSBTAT00000015947; ENSBTAP00000015947; ENSBTAG00000012025.
GeneID510296.
KEGGbta:510296.

Organism-specific databases

CTD4009.

Phylogenomic databases

GeneTreeENSGT00700000104050.
KOK09371.
OMAGNAGMEG.

Family and domain databases

Gene3D1.10.10.60. 1 hit.
2.10.110.10. 2 hits.
InterProIPR017970. Homeobox_CS.
IPR001356. Homeodomain.
IPR009057. Homeodomain-like.
IPR001781. Znf_LIM.
[Graphical view]
PfamPF00046. Homeobox. 1 hit.
PF00412. LIM. 2 hits.
[Graphical view]
SMARTSM00389. HOX. 1 hit.
SM00132. LIM. 2 hits.
[Graphical view]
SUPFAMSSF46689. Homeodomain_like. 1 hit.
PROSITEPS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
PS00478. LIM_DOMAIN_1. 2 hits.
PS50023. LIM_DOMAIN_2. 2 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio20869365.

Entry information

Entry nameF1MC25_BOVIN
AccessionPrimary (citable) accession number: F1MC25
Entry history
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: November 16, 2011
Last modified: April 3, 2013
This is version 20 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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