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F1M8W2 (F1M8W2_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 24. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length2375 AA.
Sequence statusFragment.
Protein existencePredicted

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000026149

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 Ensembl ENSRNOP00000026149

Sequences

Sequence LengthMass (Da)Tools
F1M8W2 [UniParc].

Last modified April 3, 2013. Version 2.
Checksum: 2DFF351CB0D1780A

FASTA2,375272,463
        10         20         30         40         50         60 
QVLQYRSWCQ DLEKRLEATG GLIPQRWESV EEPNLEQLLI RLEEEQQRCE SLVEVNTELR 

        70         80         90        100        110        120 
LHMEKADVVN KALQEDVEKL TVDWSRARDE LMRKESQWRM EQEFFKGYLR GEHGRLLSVW 

       130        140        150        160        170        180 
REVVTFRRHF LKMKSATDRD LTELKAEHAR LSGSLLTCCL RLTLRAQSRD SSGSGRSDES 

       190        200        210        220        230        240 
EPAQLLLLVA KTQALEKEAH EKSQELMQLK SQGDLEKAEL QDRVTELSAL LTQSQKQNKD 

       250        260        270        280        290        300 
YEEMVKALRG TMEILETNHA ELMEHEASLS RNAQEEKLSL QHVIKDITQA LASVEEEDTV 

       310        320        330        340        350        360 
TQTPGSENSL QSDYNDLSQF DSQDPNKALT LVHSVLTRRQ QAVQDLRQQL SGCQEAMSFL 

       370        380        390        400        410        420 
QQQHNQWEEE GKALRERLQK LTGERDALAG QTVDLQGEVD SLSNERLGIK PRTLGLSGKH 

       430        440        450        460        470        480 
SEDFRERELL QTARGELQQQ LEVLEQEAWR LRRVNVELQL QGDSAQGEKL EQQEELHLAV 

       490        500        510        520        530        540 
RERERLQETL VGLEAKQSES LSELIALREA LESSRLAGEL LKQEQEEVAA ALARAEQSIV 

       550        560        570        580        590        600 
ELSSSENSLK AEVADLRAAA VKLGALNEAL ALDKVALNQQ LLQLEQENQS MCSRVEAAEQ 

       610        620        630        640        650        660 
LRSALQVDLA EAERSREALW EEKTHLETQL RKAEETGAEL QAELRGAREE KEELKEKLNE 

       670        680        690        700        710        720 
AHHQQEAATA QLQQLHQDAE RQEEALARAG QEKEALVRER AALEVRLQAV ERDRQDLAEQ 

       730        740        750        760        770        780 
VLGLRSAKEQ LEGNLFEAQQ QNSVIQVTKS QLEVQIQTII QAKEVIQGEV KCLKLELDTE 

       790        800        810        820        830        840 
RSHAEQERDA VARQLAQAEQ EGQAALERQK VAHEEEVNRL QEKWEKERAL LQQKLDKTLE 

       850        860        870        880        890        900 
TLERERTELE MKLREQHTET EALRAQREEE RTQADSALYQ MQLETEKERV SLLETLLQTQ 

       910        920        930        940        950        960 
KELADASQQL ERLRQDMKVQ KLKEQETTGM LQAQLRGAQQ ELKEAIQQHR DDLAAFQKDK 

       970        980        990       1000       1010       1020 
IDLQKQVEDL TSQLVTHNDS QRLVKQEIEE KVREAQECSR IQKELEKEKA SLTLSLVEKE 

      1030       1040       1050       1060       1070       1080 
KRLLVLQEAD SVRQRELVSL RQDIQEAQEG QRELGVQVEL LRQEVKEKEA DFVAREAQLL 

      1090       1100       1110       1120       1130       1140 
EELEASRIAE RQVRASLWAQ EAKAAQLQLQ LRSTEAQLEA LVAEQQPENQ AQAQLRSLYS 

      1150       1160       1170       1180       1190       1200 
VLQQALGSAC ERRPELRGGG DSVPTPWGSD PDQNGASRLL KRGPLLTALS AEAVALALQK 

      1210       1220       1230       1240       1250       1260 
LHQDLWKAQQ ARDDLRDQVQ KLVQRLTDTE AQKSQVHSEL QDLQRQLSQS QEEKSKWEGK 

      1270       1280       1290       1300       1310       1320 
QNSLESELRD LHETMASLQS RLRQAELQKM EAQNDRELLQ ASKEKLSAQV EHLQACVTEA 

      1330       1340       1350       1360       1370       1380 
RAQASAAGVL EEDLRTARSA LKLKNEEIES ERERAQALQE QGELKVAQGK ALQENLTLLA 

      1390       1400       1410       1420       1430       1440 
QTLSNREREV ETLQAEVQEL EKQREMQKAA LELLSLDLKK RSREVDLQQE QIQELEQCRS 

      1450       1460       1470       1480       1490       1500 
VLEHLPMAVQ EREQKLSVQR DQIRELENDR EAQRTALEHQ LLDLEQKAQV IESQRGQIQD 

      1510       1520       1530       1540       1550       1560 
LKKQLGTLEC LALELEESHR KVEGQQKVIT ELEGQRELQR VALTHLTLDL EERSQELQTQ 

      1570       1580       1590       1600       1610       1620 
SSQLHELENH STRLAKELQE RDQEVMSQRQ QIEELQKQKE QLTQDLERKG QELVLQKERI 

      1630       1640       1650       1660       1670       1680 
QVLEDQRTLQ TKILEEDLEQ IKHSLRERGQ ELASQWQLMQ ERAEDGKSPS KAQRGSLEHL 

      1690       1700       1710       1720       1730       1740 
KLILRDKEKE VECQQERIQE LQEHMGQLEQ QLQGLHRKVG ETSLLLTHRE QETATLQQRL 

      1750       1760       1770       1780       1790       1800 
QEAKEQGELR EQVLQGQLEE AQRALAQRDH ELEALRQEQQ QTRGQEESMK QKTSALQAAL 

      1810       1820       1830       1840       1850       1860 
EQAHVTLKER QGELEEHRGQ VQRLQEELIV EGRQVRALEE VLGDLRAESR EHEKTVLALQ 

      1870       1880       1890       1900       1910       1920 
QRCAEQAQEH EAEARTLQDS WLQAQATLAE QEQELEALRA ENQYSRQQEE AAFGQAEALQ 

      1930       1940       1950       1960       1970       1980 
EALSKAQATL QEKEQRLLEQ AELSCTLEAS TATLQATLDT CQARARQLEE ALRVREGEIQ 

      1990       2000       2010       2020       2030       2040 
TQALQHQEAM QHLQQELCQK EEDLRQLLEK AVAQRSQENG IQEKQSLEQE KEEETRGLLE 

      2050       2060       2070       2080       2090       2100 
SLKELQLTVA QKEEEILMLR EASSPSHRSF PAEKPSLQLL LAQQDLERLQ NALRQTEARE 

      2110       2120       2130       2140       2150       2160 
IEWREKAQGL ALSLAQSKAS ISSLQEIAMF LQASVLERES EQQRLQEELV LSRQALEEQQ 

      2170       2180       2190       2200       2210       2220 
SRGPHSSSRA DQGPKAGQDT EPGEVIEAEP SPGVGEKEQL RQRLERLQQA VAELEVDRSK 

      2230       2240       2250       2260       2270       2280 
LQCHNAQLRT TLEQVERERR KLKRDSLRAS RAGSLEARET MNSSPTQQDG RGSQRGSSDS 

      2290       2300       2310       2320       2330       2340 
MLMVELQREV ALLRAQLALE RKQRQDYIAR SVQTSRELAG LHHSLSHSLL TVAQAPEATV 

      2350       2360       2370 
LEAETKKLDE SLNQSLTSPA PFLHPSLDTT QNTHR 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000026149.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000026149.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AABR06027215 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortalF1M8W2.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEF1M8W2.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000026149; ENSRNOP00000026149; ENSRNOG00000019340.

Organism-specific databases

RGD1562262. Cep250.

Phylogenomic databases

GeneTreeENSGT00730000110800.
OMAMRLKEQQ.
OrthoDBEOG7W6WJX.
TreeFamTF101138.

Family and domain databases

InterProIPR026048. CEP250.
[Graphical view]
PANTHERPTHR23159:SF1. PTHR23159:SF1. 1 hit.
ProtoNetSearch...

Other

NextBio35582722.

Entry information

Entry nameF1M8W2_RAT
AccessionPrimary (citable) accession number: F1M8W2
Entry history
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: April 3, 2013
Last modified: July 9, 2014
This is version 24 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)