F1M681 (F1M681_RAT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Protein Aff3 Ensembl ENSRNOP00000047638

Gene names

Name:

Aff3 Ensembl ENSRNOP00000047638 RGD 1308527

Organism

Rattus norvegicus (Rat) [Reference proteome] Ensembl ENSRNOP00000047638

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	928 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000047638

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	embryonic hindlimb morphogenesis Inferred from electronic annotation. Source: Compara response to tumor necrosis factor Inferred from electronic annotation. Source: Compara
Cellular_component	nucleolus Inferred from electronic annotation. Source: Compara
Molecular_function	double-stranded DNA binding Inferred from electronic annotation. Source: Compara
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F1M681 [UniParc]. Last modified April 3, 2013. Version 2. Checksum: A50B02BB046A483A	FASTA	928	100,355
	10 20 30 40 50 60 MTWLPPLSAI QAPAKVEPSK FPFPNKDSQL VSSGHSNPKK ADAEPESPDN GTSNTSTLED 70 80 90 100 110 120 DLKLSSDDEE GEQAAQRTVL RALADSSVVQ QTNCRGSAPS SKGSSSSSGG SSSSSDSEST 130 140 150 160 170 180 SGSDSETESS SSESESEGSK PPHCSSPEAE PASSNKWQLD KWLNKVNPHK PPILIQNESH 190 200 210 220 230 240 GPERNQYYTP VKDEGQDCGK LPEICQASLR DKELKTACKE EQRPRTANKV PGSKSVKQKS 250 260 270 280 290 300 PPAAVAVTAA APPPAVPSAP TESAPAPTRR SAGKKPTRRT ERTSAGDSAN CHRPEEPVAP 310 320 330 340 350 360 DALGASVVGP LEPPKTRPCG NSRTGHRKEL RSSVTCEKRR TRGLSRIVPK SKEFIETESS 370 380 390 400 410 420 SSSSSSDSDL ESEQEEYILS KAPSTTGSEQ RLKEATSNNS SSSNSSSSSS SSSSSSSSTS 430 440 450 460 470 480 RASVGSINAR TTSDIAKELE EQFYTLVPFG RNELLSPLKD SDEVRSLWVK IDLTLLSRIP 490 500 510 520 530 540 EHLSQEPGVL SAPAAKDTDS TPASHALDTP AEKTLPKSKR KRKCDNEDDY REIKKAQGKK 550 560 570 580 590 600 EGASRLAAST NNTFSGSHCN VSINSLAIPI NKNEKMLRSP SSPLSDACKH KYSSEDVTSS 610 620 630 640 650 660 SRPHGNGLLT SVSSNKEPKA ESQLQSHAGD LTKISHNSSE NGILHSKSRP QTEPWSPGSN 670 680 690 700 710 720 GHRDCKRQKL IFDDMPRSAD YFMREAKRMK HKADAMVEKF GKALNYAEAA LSFIECGNAM 730 740 750 760 770 780 EQGPMESKSP YTMYSETVEL IRYAMRLKTH SGPNATPEDK QLAALCYRCL ALLYWRMFRL 790 800 810 820 830 840 KRDHAVKYSK ALIDYFKNSS KAAQAPSPWG SSGKSTGSPS PMSPNPSPAS SVGSQGSLSS 850 860 870 880 890 900 SSGLSPSTIV SIPQRIHQMA ANHVSITNSI LHSYDYWEMA DNLAKENREF FNDLDLLMGP 910 920 VTLHSSMEHL VQYSQQGLHW LRSSTHLS

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Genome sequence of the Brown Norway rat yields insights into mammalian evolution." Rat Genome Sequencing Project Consortium Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S. Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Brown Norway Ensembl ENSRNOP00000047638.
[2]	Ensembl Submitted (JUL-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: Brown Norway Ensembl ENSRNOP00000047638.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AABR06059922 Genomic DNA. No translation available. AABR06059923 Genomic DNA. No translation available. AABR06059924 Genomic DNA. No translation available. AABR06059925 Genomic DNA. No translation available. AABR06059926 Genomic DNA. No translation available. AABR06059927 Genomic DNA. No translation available. AABR06059928 Genomic DNA. No translation available. AABR06059929 Genomic DNA. No translation available. AABR06059930 Genomic DNA. No translation available.
IPI	IPI00991168.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSRNOT00000042227; ENSRNOP00000047638; ENSRNOG00000018830.
Organism-specific databases
RGD	1308527. Aff3.
Phylogenomic databases
GeneTree	ENSGT00530000063217.
Family and domain databases
InterPro	IPR007797. TF_AF4/FMR2. [Graphical view]
PANTHER	PTHR10528. PTHR10528. 1 hit.
Pfam	PF05110. AF-4. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	35581824.

Entry information

Entry name

F1M681_RAT

Accession

Primary (citable) accession number: F1M681

Entry history

Integrated into UniProtKB/TrEMBL:	May 3, 2011
Last sequence update:	April 3, 2013
Last modified:	May 1, 2013
This is version 12 of the entry and version 2 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)