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F1M681

- F1M681_RAT

UniProt

F1M681 - F1M681_RAT

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Protein
Submitted name:

Protein Aff3

Gene
Aff3
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. double-stranded DNA binding Source: Ensembl

GO - Biological processi

  1. embryonic hindlimb morphogenesis Source: Ensembl
  2. response to tumor necrosis factor Source: Ensembl
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Aff3Imported
Gene namesi
Name:Aff3Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 9

Organism-specific databases

RGDi1308527. Aff3.

Subcellular locationi

GO - Cellular componenti

  1. nucleolus Source: Ensembl
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00530000063217.
OMAiSVTCEKR.
OrthoDBiEOG767390.
TreeFamiTF326216.

Family and domain databases

InterProiIPR007797. TF_AF4/FMR2.
[Graphical view]
PANTHERiPTHR10528. PTHR10528. 1 hit.
PfamiPF05110. AF-4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F1M681-1 [UniParc]FASTAAdd to Basket

« Hide

MTWLPPLSAI QAPAKVEPSK FPFPNKDSQL VSSGHSNPKK ADAEPESPDN    50
GTSNTSTLED DLKLSSDDEE GEQAAQRTVL RALADSSVVQ QTNCRGSAPS 100
SKGSSSSSGG SSSSSDSEST SGSDSETESS SSESESEGSK PPHCSSPEAE 150
PASSNKWQLD KWLNKVNPHK PPILIQNESH GPERNQYYTP VKDEGQDCGK 200
LPEICQASLR DKELKTACKE EQRPRTANKV PGSKSVKQKS PPAAVAVTAA 250
APPPAVPSAP TESAPAPTRR SAGKKPTRRT ERTSAGDSAN CHRPEEPVAP 300
DALGASVVGP LEPPKTRPCG NSRTGHRKEL RSSVTCEKRR TRGLSRIVPK 350
SKEFIETESS SSSSSSDSDL ESEQEEYILS KAPSTTGSEQ RLKEATSNNS 400
SSSNSSSSSS SSSSSSSSTS RASVGSINAR TTSDIAKELE EQFYTLVPFG 450
RNELLSPLKD SDEVRSLWVK IDLTLLSRIP EHLSQEPGVL SAPAAKDTDS 500
TPASHALDTP AEKTLPKSKR KRKCDNEDDY REIKKAQGKK EGASRLAAST 550
NNTFSGSHCN VSINSLAIPI NKNEKMLRSP SSPLSDACKH KYSSEDVTSS 600
SRPHGNGLLT SVSSNKEPKA ESQLQSHAGD LTKISHNSSE NGILHSKSRP 650
QTEPWSPGSN GHRDCKRQKL IFDDMPRSAD YFMREAKRMK HKADAMVEKF 700
GKALNYAEAA LSFIECGNAM EQGPMESKSP YTMYSETVEL IRYAMRLKTH 750
SGPNATPEDK QLAALCYRCL ALLYWRMFRL KRDHAVKYSK ALIDYFKNSS 800
KAAQAPSPWG SSGKSTGSPS PMSPNPSPAS SVGSQGSLSS SSGLSPSTIV 850
SIPQRIHQMA ANHVSITNSI LHSYDYWEMA DNLAKENREF FNDLDLLMGP 900
VTLHSSMEHL VQYSQQGLHW LRSSTHLS 928
Length:928
Mass (Da):100,355
Last modified:April 3, 2013 - v2
Checksum:iA50B02BB046A483A
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06059922 Genomic DNA. No translation available.
AABR06059923 Genomic DNA. No translation available.
AABR06059924 Genomic DNA. No translation available.
AABR06059925 Genomic DNA. No translation available.
AABR06059926 Genomic DNA. No translation available.
AABR06059927 Genomic DNA. No translation available.
AABR06059928 Genomic DNA. No translation available.
AABR06059929 Genomic DNA. No translation available.
AABR06059930 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSRNOT00000042227; ENSRNOP00000047638; ENSRNOG00000018830.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06059922 Genomic DNA. No translation available.
AABR06059923 Genomic DNA. No translation available.
AABR06059924 Genomic DNA. No translation available.
AABR06059925 Genomic DNA. No translation available.
AABR06059926 Genomic DNA. No translation available.
AABR06059927 Genomic DNA. No translation available.
AABR06059928 Genomic DNA. No translation available.
AABR06059929 Genomic DNA. No translation available.
AABR06059930 Genomic DNA. No translation available.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000042227 ; ENSRNOP00000047638 ; ENSRNOG00000018830 .

Organism-specific databases

RGDi 1308527. Aff3.

Phylogenomic databases

GeneTreei ENSGT00530000063217.
OMAi SVTCEKR.
OrthoDBi EOG767390.
TreeFami TF326216.

Miscellaneous databases

NextBioi 35581824.

Family and domain databases

InterProi IPR007797. TF_AF4/FMR2.
[Graphical view ]
PANTHERi PTHR10528. PTHR10528. 1 hit.
Pfami PF05110. AF-4. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiF1M681_RAT
AccessioniPrimary (citable) accession number: F1M681
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: April 3, 2013
Last modified: February 19, 2014
This is version 16 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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