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F1M681

- F1M681_RAT

UniProt

F1M681 - F1M681_RAT

Protein
Submitted name:

Protein Aff3

Gene

Aff3

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 17 (01 Oct 2014)
      Sequence version 2 (03 Apr 2013)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. double-stranded DNA binding Source: Ensembl

    GO - Biological processi

    1. embryonic hindlimb morphogenesis Source: Ensembl
    2. response to tumor necrosis factor Source: Ensembl

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein Aff3Imported
    Gene namesi
    Name:Aff3Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 9

    Organism-specific databases

    RGDi1308527. Aff3.

    Subcellular locationi

    GO - Cellular componenti

    1. nucleolus Source: Ensembl

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00530000063217.
    OMAiSVTCEKR.
    OrthoDBiEOG767390.
    TreeFamiTF326216.

    Family and domain databases

    InterProiIPR007797. TF_AF4/FMR2.
    [Graphical view]
    PANTHERiPTHR10528. PTHR10528. 1 hit.
    PfamiPF05110. AF-4. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F1M681-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTWLPPLSAI QAPAKVEPSK FPFPNKDSQL VSSGHSNPKK ADAEPESPDN    50
    GTSNTSTLED DLKLSSDDEE GEQAAQRTVL RALADSSVVQ QTNCRGSAPS 100
    SKGSSSSSGG SSSSSDSEST SGSDSETESS SSESESEGSK PPHCSSPEAE 150
    PASSNKWQLD KWLNKVNPHK PPILIQNESH GPERNQYYTP VKDEGQDCGK 200
    LPEICQASLR DKELKTACKE EQRPRTANKV PGSKSVKQKS PPAAVAVTAA 250
    APPPAVPSAP TESAPAPTRR SAGKKPTRRT ERTSAGDSAN CHRPEEPVAP 300
    DALGASVVGP LEPPKTRPCG NSRTGHRKEL RSSVTCEKRR TRGLSRIVPK 350
    SKEFIETESS SSSSSSDSDL ESEQEEYILS KAPSTTGSEQ RLKEATSNNS 400
    SSSNSSSSSS SSSSSSSSTS RASVGSINAR TTSDIAKELE EQFYTLVPFG 450
    RNELLSPLKD SDEVRSLWVK IDLTLLSRIP EHLSQEPGVL SAPAAKDTDS 500
    TPASHALDTP AEKTLPKSKR KRKCDNEDDY REIKKAQGKK EGASRLAAST 550
    NNTFSGSHCN VSINSLAIPI NKNEKMLRSP SSPLSDACKH KYSSEDVTSS 600
    SRPHGNGLLT SVSSNKEPKA ESQLQSHAGD LTKISHNSSE NGILHSKSRP 650
    QTEPWSPGSN GHRDCKRQKL IFDDMPRSAD YFMREAKRMK HKADAMVEKF 700
    GKALNYAEAA LSFIECGNAM EQGPMESKSP YTMYSETVEL IRYAMRLKTH 750
    SGPNATPEDK QLAALCYRCL ALLYWRMFRL KRDHAVKYSK ALIDYFKNSS 800
    KAAQAPSPWG SSGKSTGSPS PMSPNPSPAS SVGSQGSLSS SSGLSPSTIV 850
    SIPQRIHQMA ANHVSITNSI LHSYDYWEMA DNLAKENREF FNDLDLLMGP 900
    VTLHSSMEHL VQYSQQGLHW LRSSTHLS 928
    Length:928
    Mass (Da):100,355
    Last modified:April 3, 2013 - v2
    Checksum:iA50B02BB046A483A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06059922 Genomic DNA. No translation available.
    AABR06059923 Genomic DNA. No translation available.
    AABR06059924 Genomic DNA. No translation available.
    AABR06059925 Genomic DNA. No translation available.
    AABR06059926 Genomic DNA. No translation available.
    AABR06059927 Genomic DNA. No translation available.
    AABR06059928 Genomic DNA. No translation available.
    AABR06059929 Genomic DNA. No translation available.
    AABR06059930 Genomic DNA. No translation available.

    Genome annotation databases

    EnsembliENSRNOT00000042227; ENSRNOP00000047638; ENSRNOG00000018830.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06059922 Genomic DNA. No translation available.
    AABR06059923 Genomic DNA. No translation available.
    AABR06059924 Genomic DNA. No translation available.
    AABR06059925 Genomic DNA. No translation available.
    AABR06059926 Genomic DNA. No translation available.
    AABR06059927 Genomic DNA. No translation available.
    AABR06059928 Genomic DNA. No translation available.
    AABR06059929 Genomic DNA. No translation available.
    AABR06059930 Genomic DNA. No translation available.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000042227 ; ENSRNOP00000047638 ; ENSRNOG00000018830 .

    Organism-specific databases

    RGDi 1308527. Aff3.

    Phylogenomic databases

    GeneTreei ENSGT00530000063217.
    OMAi SVTCEKR.
    OrthoDBi EOG767390.
    TreeFami TF326216.

    Miscellaneous databases

    NextBioi 35581824.

    Family and domain databases

    InterProi IPR007797. TF_AF4/FMR2.
    [Graphical view ]
    PANTHERi PTHR10528. PTHR10528. 1 hit.
    Pfami PF05110. AF-4. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiF1M681_RAT
    AccessioniPrimary (citable) accession number: F1M681
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 3, 2011
    Last sequence update: April 3, 2013
    Last modified: October 1, 2014
    This is version 17 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3