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Protein
Submitted name:

Protein Aff3

Gene

Aff3

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Aff3Imported
Gene namesi
Name:Aff3Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494 Componenti: Chromosome 9

Organism-specific databases

RGDi1308527. Aff3.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000047638.

Family & Domainsi

Phylogenomic databases

InParanoidiF1M681.
OMAiVTCEKRR.
OrthoDBiEOG767390.
TreeFamiTF326216.

Family and domain databases

InterProiIPR007797. TF_AF4/FMR2.
[Graphical view]
PANTHERiPTHR10528. PTHR10528. 1 hit.
PfamiPF05110. AF-4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F1M681-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSTLGRVYEP DRNALRRKER ERRSQETQQD SGGFNSGYSL FSEPYKTNKG
60 70 80 90 100
DELSNRIQNT LGNYDEMKDF LTDRSNQSHL VGVPKPGVPQ TPVNKIDDHF
110 120 130 140 150
VAESRAQPQP SSVCSTASST PAAVPVQQSK RGTMGWQKAG HPPSDGQQRA
160 170 180 190 200
AQQGSLRTLL GDGVGRQQTR AKQVCNVETG LQTQERPPAM AAKHSGGGHC
210 220 230 240 250
VQNFPPSLAS KPSLGQQKPT AYVRPMDGQD QAPDESPKLK SSTETAVHCT
260 270 280 290 300
AYRGVPAGKP ESARAKGKLA KFSIPKQGEE NRSGETNSCV EEIIREMTWL
310 320 330 340 350
PPLSAIQAPA KVEPSKFPFP NKDSQLVSSG HSNPKKADAE PESPDNGTSN
360 370 380 390 400
TSTLEDDLKL SSDDEEGEQA AQRTVLRALA DSSVVQQTNC RGSAPSSKGS
410 420 430 440 450
SSSSGGSSSS SDSESTSGSD SETESSSSES ESEGSKPPHC SSPEAEPASS
460 470 480 490 500
NKWQLDKWLN KVNPHKPPIL IQNESHGPER NQYYTPVKDE GQDCGKLPEI
510 520 530 540 550
CQASLRDKEL KTACKEEQRP RTANKVPGSK SVKQKSPPAA VAVTAAAPPP
560 570 580 590 600
AVPSAPTESA PAPTRRSAGK KPTRRTERTS AGDSANCHRP EEPVAPDALG
610 620 630 640 650
ASVVGPLEPP KTRPCGNSRT GHRKELRSSV TCEKRRTRGL SRIVPKSKEF
660 670 680 690 700
IETESSSSSS SSDSDLESEQ EEYILSKAPS TTGSEQRLKE ATSNNSSSSN
710 720 730 740 750
SSSSSSSSSS SSSSTSRASV GSINARTTSD IAKELEEQFY TLVPFGRNEL
760 770 780 790 800
LSPLKDSDEV RSLWVKIDLT LLSRIPEHLS QEPGVLSAPA AKDTDSTPAS
810 820 830 840 850
HALDTPAEKT LPKSKRKRKC DNEDDYREIK KAQGKKEGAS RLAASTNNTF
860 870 880 890 900
SGSHCNVSIN SLAIPINKNE KMLRSPSSPL SDACKHKYSS EDVTSSSRPH
910 920 930 940 950
GNGLLTSVSS NKEPKAESQL QSHAGDLTKI SHNSSENGIL HSKSRPQTEP
960 970 980 990 1000
WSPGSNGHRD CKRQKLIFDD MPRSADYFMR EAKRMKHKAD AMVEKFGKAL
1010 1020 1030 1040 1050
NYAEAALSFI ECGNAMEQGP MESKSPYTMY SETVELIRYA MRLKTHSGPN
1060 1070 1080 1090 1100
ATPEDKQLAA LCYRCLALLY WRMFRLKRDH AVKYSKALID YFKNSSKAAQ
1110 1120 1130 1140 1150
APSPWGSSGK STGSPSPMSP NPSPASSVGS QGSLSSSSGL SPSTIVSIPQ
1160 1170 1180 1190 1200
RIHQMAANHV SITNSILHSY DYWEMADNLA KENREFFNDL DLLMGPVTLH
1210 1220
SSMEHLVQYS QQGLHWLRSS THLS
Length:1,224
Mass (Da):132,492
Last modified:July 22, 2015 - v3
Checksum:i3A1AF1039F49908C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07067428 Genomic DNA. No translation available.
RefSeqiXP_008765260.1. XM_008767038.1.
UniGeneiRn.203251.

Genome annotation databases

EnsembliENSRNOT00000042227; ENSRNOP00000047638; ENSRNOG00000018830.
GeneIDi363220.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07067428 Genomic DNA. No translation available.
RefSeqiXP_008765260.1. XM_008767038.1.
UniGeneiRn.203251.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000047638.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000042227; ENSRNOP00000047638; ENSRNOG00000018830.
GeneIDi363220.

Organism-specific databases

CTDi3899.
RGDi1308527. Aff3.

Phylogenomic databases

InParanoidiF1M681.
OMAiVTCEKRR.
OrthoDBiEOG767390.
TreeFamiTF326216.

Miscellaneous databases

NextBioi35581824.

Family and domain databases

InterProiIPR007797. TF_AF4/FMR2.
[Graphical view]
PANTHERiPTHR10528. PTHR10528. 1 hit.
PfamiPF05110. AF-4. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.
  3. "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues."
    Lundby A., Secher A., Lage K., Nordsborg N.B., Dmytriyev A., Lundby C., Olsen J.V.
    Nat. Commun. 3:876-876(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiF1M681_RAT
AccessioniPrimary (citable) accession number: F1M681
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: July 22, 2015
Last modified: July 22, 2015
This is version 25 of the entry and version 3 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.