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F1M681 (F1M681_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length928 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000047638

Sequences

Sequence LengthMass (Da)Tools
F1M681 [UniParc].

Last modified April 3, 2013. Version 2.
Checksum: A50B02BB046A483A

FASTA928100,355
        10         20         30         40         50         60 
MTWLPPLSAI QAPAKVEPSK FPFPNKDSQL VSSGHSNPKK ADAEPESPDN GTSNTSTLED 

        70         80         90        100        110        120 
DLKLSSDDEE GEQAAQRTVL RALADSSVVQ QTNCRGSAPS SKGSSSSSGG SSSSSDSEST 

       130        140        150        160        170        180 
SGSDSETESS SSESESEGSK PPHCSSPEAE PASSNKWQLD KWLNKVNPHK PPILIQNESH 

       190        200        210        220        230        240 
GPERNQYYTP VKDEGQDCGK LPEICQASLR DKELKTACKE EQRPRTANKV PGSKSVKQKS 

       250        260        270        280        290        300 
PPAAVAVTAA APPPAVPSAP TESAPAPTRR SAGKKPTRRT ERTSAGDSAN CHRPEEPVAP 

       310        320        330        340        350        360 
DALGASVVGP LEPPKTRPCG NSRTGHRKEL RSSVTCEKRR TRGLSRIVPK SKEFIETESS 

       370        380        390        400        410        420 
SSSSSSDSDL ESEQEEYILS KAPSTTGSEQ RLKEATSNNS SSSNSSSSSS SSSSSSSSTS 

       430        440        450        460        470        480 
RASVGSINAR TTSDIAKELE EQFYTLVPFG RNELLSPLKD SDEVRSLWVK IDLTLLSRIP 

       490        500        510        520        530        540 
EHLSQEPGVL SAPAAKDTDS TPASHALDTP AEKTLPKSKR KRKCDNEDDY REIKKAQGKK 

       550        560        570        580        590        600 
EGASRLAAST NNTFSGSHCN VSINSLAIPI NKNEKMLRSP SSPLSDACKH KYSSEDVTSS 

       610        620        630        640        650        660 
SRPHGNGLLT SVSSNKEPKA ESQLQSHAGD LTKISHNSSE NGILHSKSRP QTEPWSPGSN 

       670        680        690        700        710        720 
GHRDCKRQKL IFDDMPRSAD YFMREAKRMK HKADAMVEKF GKALNYAEAA LSFIECGNAM 

       730        740        750        760        770        780 
EQGPMESKSP YTMYSETVEL IRYAMRLKTH SGPNATPEDK QLAALCYRCL ALLYWRMFRL 

       790        800        810        820        830        840 
KRDHAVKYSK ALIDYFKNSS KAAQAPSPWG SSGKSTGSPS PMSPNPSPAS SVGSQGSLSS 

       850        860        870        880        890        900 
SSGLSPSTIV SIPQRIHQMA ANHVSITNSI LHSYDYWEMA DNLAKENREF FNDLDLLMGP 

       910        920 
VTLHSSMEHL VQYSQQGLHW LRSSTHLS 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000047638.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000047638.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AABR06059922 Genomic DNA. No translation available.
AABR06059923 Genomic DNA. No translation available.
AABR06059924 Genomic DNA. No translation available.
AABR06059925 Genomic DNA. No translation available.
AABR06059926 Genomic DNA. No translation available.
AABR06059927 Genomic DNA. No translation available.
AABR06059928 Genomic DNA. No translation available.
AABR06059929 Genomic DNA. No translation available.
AABR06059930 Genomic DNA. No translation available.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000042227; ENSRNOP00000047638; ENSRNOG00000018830.

Organism-specific databases

RGD1308527. Aff3.

Phylogenomic databases

GeneTreeENSGT00530000063217.
OMASVTCEKR.
OrthoDBEOG767390.
TreeFamTF326216.

Family and domain databases

InterProIPR007797. TF_AF4/FMR2.
[Graphical view]
PANTHERPTHR10528. PTHR10528. 1 hit.
PfamPF05110. AF-4. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio35581824.

Entry information

Entry nameF1M681_RAT
AccessionPrimary (citable) accession number: F1M681
Entry history
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: April 3, 2013
Last modified: February 19, 2014
This is version 16 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)