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F1M681

- F1M681_RAT

UniProt

F1M681 - F1M681_RAT

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Protein
Submitted name:

Protein Aff3

Gene

Aff3

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. double-stranded DNA binding Source: Ensembl

GO - Biological processi

  1. embryonic hindlimb morphogenesis Source: Ensembl
  2. response to tumor necrosis factor Source: Ensembl
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Aff3Imported
Gene namesi
Name:Aff3Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 9

Organism-specific databases

RGDi1308527. Aff3.

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: Ensembl
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00530000063217.
InParanoidiF1M681.
OMAiSVTCEKR.
OrthoDBiEOG767390.
TreeFamiTF326216.

Family and domain databases

InterProiIPR007797. TF_AF4/FMR2.
[Graphical view]
PANTHERiPTHR10528. PTHR10528. 1 hit.
PfamiPF05110. AF-4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F1M681-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTWLPPLSAI QAPAKVEPSK FPFPNKDSQL VSSGHSNPKK ADAEPESPDN
60 70 80 90 100
GTSNTSTLED DLKLSSDDEE GEQAAQRTVL RALADSSVVQ QTNCRGSAPS
110 120 130 140 150
SKGSSSSSGG SSSSSDSEST SGSDSETESS SSESESEGSK PPHCSSPEAE
160 170 180 190 200
PASSNKWQLD KWLNKVNPHK PPILIQNESH GPERNQYYTP VKDEGQDCGK
210 220 230 240 250
LPEICQASLR DKELKTACKE EQRPRTANKV PGSKSVKQKS PPAAVAVTAA
260 270 280 290 300
APPPAVPSAP TESAPAPTRR SAGKKPTRRT ERTSAGDSAN CHRPEEPVAP
310 320 330 340 350
DALGASVVGP LEPPKTRPCG NSRTGHRKEL RSSVTCEKRR TRGLSRIVPK
360 370 380 390 400
SKEFIETESS SSSSSSDSDL ESEQEEYILS KAPSTTGSEQ RLKEATSNNS
410 420 430 440 450
SSSNSSSSSS SSSSSSSSTS RASVGSINAR TTSDIAKELE EQFYTLVPFG
460 470 480 490 500
RNELLSPLKD SDEVRSLWVK IDLTLLSRIP EHLSQEPGVL SAPAAKDTDS
510 520 530 540 550
TPASHALDTP AEKTLPKSKR KRKCDNEDDY REIKKAQGKK EGASRLAAST
560 570 580 590 600
NNTFSGSHCN VSINSLAIPI NKNEKMLRSP SSPLSDACKH KYSSEDVTSS
610 620 630 640 650
SRPHGNGLLT SVSSNKEPKA ESQLQSHAGD LTKISHNSSE NGILHSKSRP
660 670 680 690 700
QTEPWSPGSN GHRDCKRQKL IFDDMPRSAD YFMREAKRMK HKADAMVEKF
710 720 730 740 750
GKALNYAEAA LSFIECGNAM EQGPMESKSP YTMYSETVEL IRYAMRLKTH
760 770 780 790 800
SGPNATPEDK QLAALCYRCL ALLYWRMFRL KRDHAVKYSK ALIDYFKNSS
810 820 830 840 850
KAAQAPSPWG SSGKSTGSPS PMSPNPSPAS SVGSQGSLSS SSGLSPSTIV
860 870 880 890 900
SIPQRIHQMA ANHVSITNSI LHSYDYWEMA DNLAKENREF FNDLDLLMGP
910 920
VTLHSSMEHL VQYSQQGLHW LRSSTHLS
Length:928
Mass (Da):100,355
Last modified:April 3, 2013 - v2
Checksum:iA50B02BB046A483A
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06059922 Genomic DNA. No translation available.
AABR06059923 Genomic DNA. No translation available.
AABR06059924 Genomic DNA. No translation available.
AABR06059925 Genomic DNA. No translation available.
AABR06059926 Genomic DNA. No translation available.
AABR06059927 Genomic DNA. No translation available.
AABR06059928 Genomic DNA. No translation available.
AABR06059929 Genomic DNA. No translation available.
AABR06059930 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSRNOT00000042227; ENSRNOP00000047638; ENSRNOG00000018830.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06059922 Genomic DNA. No translation available.
AABR06059923 Genomic DNA. No translation available.
AABR06059924 Genomic DNA. No translation available.
AABR06059925 Genomic DNA. No translation available.
AABR06059926 Genomic DNA. No translation available.
AABR06059927 Genomic DNA. No translation available.
AABR06059928 Genomic DNA. No translation available.
AABR06059929 Genomic DNA. No translation available.
AABR06059930 Genomic DNA. No translation available.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000042227 ; ENSRNOP00000047638 ; ENSRNOG00000018830 .

Organism-specific databases

RGDi 1308527. Aff3.

Phylogenomic databases

GeneTreei ENSGT00530000063217.
InParanoidi F1M681.
OMAi SVTCEKR.
OrthoDBi EOG767390.
TreeFami TF326216.

Miscellaneous databases

NextBioi 35581824.

Family and domain databases

InterProi IPR007797. TF_AF4/FMR2.
[Graphical view ]
PANTHERi PTHR10528. PTHR10528. 1 hit.
Pfami PF05110. AF-4. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiF1M681_RAT
AccessioniPrimary (citable) accession number: F1M681
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: April 3, 2013
Last modified: October 29, 2014
This is version 18 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3