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F1M656

- F1M656_RAT

UniProt

F1M656 - F1M656_RAT

Protein

Tubby-like protein

Gene

Tulp3

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 26 (01 Oct 2014)
      Sequence version 2 (03 Apr 2013)
      Previous versions | rss
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    Functioni

    GO - Biological processi

    1. brain development Source: Ensembl
    2. bronchus morphogenesis Source: Ensembl
    3. central nervous system neuron differentiation Source: Ensembl
    4. embryonic camera-type eye development Source: Ensembl
    5. embryonic digit morphogenesis Source: Ensembl
    6. embryonic neurocranium morphogenesis Source: Ensembl
    7. in utero embryonic development Source: Ensembl
    8. negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning Source: Ensembl
    9. neural tube closure Source: Ensembl
    10. smoothened signaling pathway involved in dorsal/ventral neural tube patterning Source: Ensembl

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Tubby-like proteinUniRule annotation
    Gene namesi
    Name:Tulp3Imported
    Synonyms:LOC100364088Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 4

    Organism-specific databases

    RGDi2321769. LOC100364088.
    1585259. Tulp3.

    Subcellular locationi

    GO - Cellular componenti

    1. primary cilium Source: Ensembl

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the TUB family.UniRule annotation

    Phylogenomic databases

    GeneTreeiENSGT00610000085970.
    OMAiAFEDETM.
    OrthoDBiEOG77HDDQ.
    TreeFamiTF314076.

    Family and domain databases

    Gene3Di3.20.90.10. 1 hit.
    InterProiIPR000007. Tubby_C.
    IPR025659. Tubby_C-like.
    IPR018066. Tubby_C_CS.
    IPR005398. Tubby_N.
    [Graphical view]
    PfamiPF01167. Tub. 1 hit.
    [Graphical view]
    PRINTSiPR01573. SUPERTUBBY.
    PR01574. TUBBYPROTEIN.
    SUPFAMiSSF54518. SSF54518. 1 hit.
    PROSITEiPS01200. TUB_1. 1 hit.
    PS01201. TUB_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F1M656-1 [UniParc]FASTAAdd to Basket

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    MEAARCAPGS RGDSAFEDET LRLRQLKLDN QRALLEKKQR KKRLEPLMVQ    50
    PNPEARLRRL KPRGSEEHTP LVDPQTPCSD VILHGIDGPA AFLKPEAQDL 100
    ESKPQVLSVG SSPTPEEGTE GSADGESPVE TASKPDLQEI LQKHGILSSV 150
    NYDEEPDEEA EDEGENLSSL PAQSEKESAG ASQKAASDTG ASGMTAQQGD 200
    AQLGEVENLE DFAYSPAPRG VTVKCRVTRD KKGMDRGLFP TYYMHLEKEE 250
    NRKVQVLGLK LHAWSRKSLY LDHTAPEILK KTADHHVGRF RSNLMGTKFT 300
    VYDHGVNPVK AQGLVEKAHT RQELAAICYE TNVLGFKGPR KMSVIIPGMN 350
    MNHERIPFRP RNEHESLLSK WQNKSMENLI ELHNKAPVWN DDTQSYVLNF 400
    HGRVTQASVK NFQIVHGNDP DYIVMQFGRV ADDVFTLDYN YPLCALQAFA 450
    IGLSSFDSKL ACE 463
    Length:463
    Mass (Da):51,596
    Last modified:April 3, 2013 - v2
    Checksum:iC9E2AA16F80B59F3
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06033601 Genomic DNA. No translation available.
    AABR06033602 Genomic DNA. No translation available.
    AABR06033603 Genomic DNA. No translation available.

    Genome annotation databases

    EnsembliENSRNOT00000007634; ENSRNOP00000007634; ENSRNOG00000005767.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06033601 Genomic DNA. No translation available.
    AABR06033602 Genomic DNA. No translation available.
    AABR06033603 Genomic DNA. No translation available.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000007634 ; ENSRNOP00000007634 ; ENSRNOG00000005767 .

    Organism-specific databases

    RGDi 2321769. LOC100364088.
    1585259. Tulp3.

    Phylogenomic databases

    GeneTreei ENSGT00610000085970.
    OMAi AFEDETM.
    OrthoDBi EOG77HDDQ.
    TreeFami TF314076.

    Miscellaneous databases

    NextBioi 35581799.
    PROi F1M656.

    Family and domain databases

    Gene3Di 3.20.90.10. 1 hit.
    InterProi IPR000007. Tubby_C.
    IPR025659. Tubby_C-like.
    IPR018066. Tubby_C_CS.
    IPR005398. Tubby_N.
    [Graphical view ]
    Pfami PF01167. Tub. 1 hit.
    [Graphical view ]
    PRINTSi PR01573. SUPERTUBBY.
    PR01574. TUBBYPROTEIN.
    SUPFAMi SSF54518. SSF54518. 1 hit.
    PROSITEi PS01200. TUB_1. 1 hit.
    PS01201. TUB_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiF1M656_RAT
    AccessioniPrimary (citable) accession number: F1M656
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 3, 2011
    Last sequence update: April 3, 2013
    Last modified: October 1, 2014
    This is version 26 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3