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Protein

Tubby-like protein

Gene

Tulp3

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Enzyme and pathway databases

ReactomeiR-RNO-5610787 Hedgehog 'off' state

Names & Taxonomyi

Protein namesi
Recommended name:
Tubby-like proteinUniRule annotation
Gene namesi
Name:Tulp3Imported
Synonyms:LOC100364088Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 4

Organism-specific databases

RGDi2321769 LOC100364088
1585259 Tulp3

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PRIDEiF1M656

Expressioni

Gene expression databases

BgeeiENSRNOG00000005767
ExpressionAtlasiF1M656 baseline and differential

Interactioni

GO - Molecular functioni

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini18 – 68Tub_NInterPro annotationAdd BLAST51
Domaini72 – 180Tub_NInterPro annotationAdd BLAST109
Domaini204 – 446TubInterPro annotationAdd BLAST243

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili11 – 31Sequence analysisAdd BLAST21

Sequence similaritiesi

Belongs to the TUB family.UniRule annotationSAAS annotation

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG2502 Eukaryota
ENOG410XQFT LUCA
GeneTreeiENSGT00610000085970
InParanoidiF1M656
OMAiYDHGVSP
OrthoDBiEOG091G04TF
TreeFamiTF314076

Family and domain databases

Gene3Di3.20.90.10, 1 hit
InterProiView protein in InterPro
IPR025659 Tubby-like_C
IPR000007 Tubby_C
IPR018066 Tubby_C_CS
IPR005398 Tubby_N
PfamiView protein in Pfam
PF01167 Tub, 1 hit
PF16322 Tub_N, 2 hits
PRINTSiPR01573 SUPERTUBBY
PR01574 TUBBYPROTEIN
SUPFAMiSSF54518 SSF54518, 1 hit
PROSITEiView protein in PROSITE
PS01200 TUB_1, 1 hit
PS01201 TUB_2, 1 hit

Sequencei

Sequence statusi: Complete.

F1M656-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
NSAFEDETLR LRQLKLDNQR ALLEKKQRKK RLEPLMVQPN PEARLRRLKP
60 70 80 90 100
RGSEEHTPLV DPQTPCSDVI LHGIDGPAAF LKPEAQDLES KPQVLSVGSS
110 120 130 140 150
PTPEEGTEGS ADGESPVETA SKPDLQEILQ KHGILSSVNY DEEPDEEAED
160 170 180 190 200
EGENLSSLPA QSEKESAGAS QKAASDTGAS GMTAQQGDAQ LGEVENLEDF
210 220 230 240 250
AYSPAPRGVT VKCRVTRDKK GMDRGLFPTY YMHLEKEENR KIFLLAGRKR
260 270 280 290 300
KKSKTSNYLV STDPTDLSRE GESYIGKLRS NLMGTKFTVY DHGVNPVKAQ
310 320 330 340 350
GLVEKAHTRQ ELAAICYETN VLGFKGPRKM SVIIPGMNMN HERIPFRPRN
360 370 380 390 400
EHESLLSKWQ NKSMENLIEL HNKAPVWNDD TQSYVLNFHG RVTQASVKNF
410 420 430 440 450
QIVHGNDPDY IVMQFGRVAD DVFTLDYNYP LCALQAFAIG LSSFDSKLAC

E
Length:451
Mass (Da):50,314
Last modified:July 22, 2015 - v3
Checksum:i3B82277E063F7F1D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC103290 Genomic DNA No translation available.

Genome annotation databases

EnsembliENSRNOT00000007634; ENSRNOP00000007634; ENSRNOG00000005767

Similar proteinsi

Entry informationi

Entry nameiF1M656_RAT
AccessioniPrimary (citable) accession number: F1M656
Entry historyiIntegrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: July 22, 2015
Last modified: May 23, 2018
This is version 55 of the entry and version 3 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

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