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F1M656

- F1M656_RAT

UniProt

F1M656 - F1M656_RAT

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Protein
Tubby-like protein
Gene
Tulp3, LOC100364088
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

GO - Biological processi

  1. brain development Source: Ensembl
  2. bronchus morphogenesis Source: Ensembl
  3. central nervous system neuron differentiation Source: Ensembl
  4. embryonic camera-type eye development Source: Ensembl
  5. embryonic digit morphogenesis Source: Ensembl
  6. embryonic neurocranium morphogenesis Source: Ensembl
  7. in utero embryonic development Source: Ensembl
  8. negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning Source: Ensembl
  9. neural tube closure Source: Ensembl
  10. smoothened signaling pathway involved in dorsal/ventral neural tube patterning Source: Ensembl
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Tubby-like proteinUniRule annotation
Gene namesi
Name:Tulp3Imported
Synonyms:LOC100364088Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 4

Organism-specific databases

RGDi2321769. LOC100364088.
1585259. Tulp3.

Subcellular locationi

GO - Cellular componenti

  1. primary cilium Source: Ensembl
Complete GO annotation...

Family & Domainsi

Sequence similaritiesi

Belongs to the TUB family.UniRule annotation

Phylogenomic databases

GeneTreeiENSGT00610000085970.
OMAiAFEDETM.
OrthoDBiEOG77HDDQ.
TreeFamiTF314076.

Family and domain databases

Gene3Di3.20.90.10. 1 hit.
InterProiIPR000007. Tubby_C.
IPR025659. Tubby_C-like.
IPR018066. Tubby_C_CS.
IPR005398. Tubby_N.
[Graphical view]
PfamiPF01167. Tub. 1 hit.
[Graphical view]
PRINTSiPR01573. SUPERTUBBY.
PR01574. TUBBYPROTEIN.
SUPFAMiSSF54518. SSF54518. 1 hit.
PROSITEiPS01200. TUB_1. 1 hit.
PS01201. TUB_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F1M656-1 [UniParc]FASTAAdd to Basket

« Hide

MEAARCAPGS RGDSAFEDET LRLRQLKLDN QRALLEKKQR KKRLEPLMVQ    50
PNPEARLRRL KPRGSEEHTP LVDPQTPCSD VILHGIDGPA AFLKPEAQDL 100
ESKPQVLSVG SSPTPEEGTE GSADGESPVE TASKPDLQEI LQKHGILSSV 150
NYDEEPDEEA EDEGENLSSL PAQSEKESAG ASQKAASDTG ASGMTAQQGD 200
AQLGEVENLE DFAYSPAPRG VTVKCRVTRD KKGMDRGLFP TYYMHLEKEE 250
NRKVQVLGLK LHAWSRKSLY LDHTAPEILK KTADHHVGRF RSNLMGTKFT 300
VYDHGVNPVK AQGLVEKAHT RQELAAICYE TNVLGFKGPR KMSVIIPGMN 350
MNHERIPFRP RNEHESLLSK WQNKSMENLI ELHNKAPVWN DDTQSYVLNF 400
HGRVTQASVK NFQIVHGNDP DYIVMQFGRV ADDVFTLDYN YPLCALQAFA 450
IGLSSFDSKL ACE 463
Length:463
Mass (Da):51,596
Last modified:April 3, 2013 - v2
Checksum:iC9E2AA16F80B59F3
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06033601 Genomic DNA. No translation available.
AABR06033602 Genomic DNA. No translation available.
AABR06033603 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSRNOT00000007634; ENSRNOP00000007634; ENSRNOG00000005767.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06033601 Genomic DNA. No translation available.
AABR06033602 Genomic DNA. No translation available.
AABR06033603 Genomic DNA. No translation available.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000007634 ; ENSRNOP00000007634 ; ENSRNOG00000005767 .

Organism-specific databases

RGDi 2321769. LOC100364088.
1585259. Tulp3.

Phylogenomic databases

GeneTreei ENSGT00610000085970.
OMAi AFEDETM.
OrthoDBi EOG77HDDQ.
TreeFami TF314076.

Miscellaneous databases

NextBioi 35581799.
PROi F1M656.

Family and domain databases

Gene3Di 3.20.90.10. 1 hit.
InterProi IPR000007. Tubby_C.
IPR025659. Tubby_C-like.
IPR018066. Tubby_C_CS.
IPR005398. Tubby_N.
[Graphical view ]
Pfami PF01167. Tub. 1 hit.
[Graphical view ]
PRINTSi PR01573. SUPERTUBBY.
PR01574. TUBBYPROTEIN.
SUPFAMi SSF54518. SSF54518. 1 hit.
PROSITEi PS01200. TUB_1. 1 hit.
PS01201. TUB_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiF1M656_RAT
AccessioniPrimary (citable) accession number: F1M656
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: April 3, 2013
Last modified: May 14, 2014
This is version 25 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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