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Protein
Submitted name:

B-TFIID TATA-box-binding protein-associated factor 1

Gene

Btaf1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
B-TFIID TATA-box-binding protein-associated factor 1Imported
Gene namesi
Name:Btaf1Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 1

Organism-specific databases

RGDi1564130 Btaf1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 22Sequence analysisAdd BLAST22
ChainiPRO_500326607723 – 1855Sequence analysisAdd BLAST1833

Proteomic databases

PaxDbiF1LW16
PRIDEiF1LW16

PTM databases

iPTMnetiF1LW16
PhosphoSitePlusiF1LW16

Expressioni

Gene expression databases

BgeeiENSRNOG00000017938
ExpressionAtlasiF1LW16 baseline and differential

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000024465

Structurei

3D structure databases

ProteinModelPortaliF1LW16
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1284 – 1459Helicase ATP-bindingInterPro annotationAdd BLAST176
Domaini1642 – 1796Helicase C-terminalInterPro annotationAdd BLAST155

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili834 – 854Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis, SignalSequence analysis

Phylogenomic databases

eggNOGiKOG0387 Eukaryota
ENOG410XP4Z LUCA
GeneTreeiENSGT00910000144109
InParanoidiF1LW16
KOiK15192
OMAiDWNPQKD
OrthoDBiEOG091G00E4
TreeFamiTF300546

Family and domain databases

CDDicd00079 HELICc, 1 hit
Gene3Di1.25.10.10, 2 hits
3.40.50.10810, 1 hit
InterProiView protein in InterPro
IPR011989 ARM-like
IPR016024 ARM-type_fold
IPR022707 DUF3535
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR038718 SNF2-like_sf
IPR000330 SNF2_N
PfamiView protein in Pfam
PF12054 DUF3535, 1 hit
PF00271 Helicase_C, 1 hit
PF00176 SNF2_N, 1 hit
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SM00490 HELICc, 1 hit
SUPFAMiSSF48371 SSF48371, 5 hits
SSF52540 SSF52540, 2 hits
PROSITEiView protein in PROSITE
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit

Sequencei

Sequence statusi: Complete.

F1LW16-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGYQACPVFL LILDRLFILL DTGTTPVTRK AAAQQLGEVV KLHPHELNNL
60 70 80 90 100
LSKVLIYLRS ANWDTRIAAG QAVEAIVKNV PEWNPVPRTK QEPTECSMED
110 120 130 140 150
SSTTDRLNFD RFDICRLLQH GASLLGSAGA EFEVQDEKSG EVDPKERIAR
160 170 180 190 200
QRKLLQKKLG LNMGEAIGMS TEELFNDEDL DYTPTSAALV NKQSTLQAAE
210 220 230 240 250
LIDSEFRAGM SNRQKNKAKR MAKLFAKQRS RDAVETNEKS NDSTDGEPEE
260 270 280 290 300
KRRKVANVVI NQTASDAKVL IDNVPESSSF IEETNEWPLE SFCEELCNDL
310 320 330 340 350
FNPSWEVRHG AGTGLREILK AHGKSGGKMG DSTLEEMIQQ HQEWLEDLVI
360 370 380 390 400
RLLCVFALDR FGDFVSDEVV APVRETCAQT LGVVLKHMNE TGVHKTVDVL
410 420 430 440 450
LKLLTQEQWE VRHGGLLGIK YALAVRQDVI NTLLPKVLTR IIEGLQDLDD
460 470 480 490 500
DVRAVAAASL VPVVESLVYL QTQKVPSIIN TLWDSLLELD DLTASTNSIM
510 520 530 540 550
TLLSSMLTYP QVQQCSIQQS LTVLVPRVWP FLHHTISSVR RAALETLFTL
560 570 580 590 600
LSTQDQNSSS WLIPILSDML RHIFQFCVLE SSQEILDLIH KVWMELLSKA
610 620 630 640 650
SVQYVVAAAC PWMGAWLCLM MQPSHLPIDL NMLLEVKART KEKTGGKVRQ
660 670 680 690 700
GQMQSKEVLQ EYIAGADTIM EDPATRDFVV MRARMMAAKL LGALCCCICD
710 720 730 740 750
PGVNMVNQEI KPAESLGQLL LFHLNSKSAL QRISAALVIC EWAALQKECK
760 770 780 790 800
AVTLAVQPRL LDILSEHLYY DEIAVPFTRM QNECKQFISS LADAHIEVGN
810 820 830 840 850
RVNNNVLTID QANDLVTTLF NEVTSTFDLN PQVLQQLDSK RHQVQMTVAE
860 870 880 890 900
TNQEWQVLQL RVHTFAACAV VSLQQLPEKL NPIIKPLMET IKKEENTLVQ
910 920 930 940 950
NYAAQYIAKL LQQCTTRTPC PNSKVIKNLC SSLCVDPYLT PCVTCPVPTQ
960 970 980 990 1000
SGQENSKGSN SEKDGMHHTV TKHRGIITLY RHQKAAFAIT SRRGPIPKAI
1010 1020 1030 1040 1050
KAQIADLPAG SSGNILVELD EGQKPYLVQR RGAEFALTTV VKHFGAEMAL
1060 1070 1080 1090 1100
KLPHLWDAMV GPLKTMIDLN NFDGKSLLER GDAPAQELVN SLQVFETAAA
1110 1120 1130 1140 1150
SMDSELHPLL VQHLPHLYMC LQYPSTAVRH MAARCVGVMS KIATMETMNI
1160 1170 1180 1190 1200
FLEKVLPWLG AIDDNVKQEG AIEALACVME QLDVGIVPYI VLLVVPVLGR
1210 1220 1230 1240 1250
MSDQTDSVRF MATQCFATLI RLMPLEAGIP DPPNMSEELI QLKAKERHFL
1260 1270 1280 1290 1300
EQLLDGKKLE NYKIPVPINA ELRKYQQDGV NWLAFLNKYK LHGILCDDMG
1310 1320 1330 1340 1350
LGKTLQSICI LAGDHCQRAQ EYARSKLAEC MPLPSLVVCP PTLTGHWVDE
1360 1370 1380 1390 1400
VGKFCSREYL NPLHYTGPPT ERIRLQHQVK RHNLIVASYD VVRNDIDFFR
1410 1420 1430 1440 1450
NIKFNYCILD EGHVIKNGKT KLSKAVKQLT ANYRIILSGT PIQNNVLELW
1460 1470 1480 1490 1500
SLFDFLMPGF LGTERQFAAR YGKPILASRD ARSSSREQEA GVLAMDALHR
1510 1520 1530 1540 1550
QVLPFLLRRM KEDVLQDLPP KIIQDYYCTL SPLQVQLYED FAKSRAKCDV
1560 1570 1580 1590 1600
DETVSSAALS EETEKPKLKA TGHVFQALQY LRKLCNHPAL VLTPQHPEFK
1610 1620 1630 1640 1650
NTTEKLAVQN SSLHDIQHAP KLSALKQLLL DCGLGNGTSS ESGTESVVAQ
1660 1670 1680 1690 1700
HRILIFCQLK SMLDIVEHDL LKPHLPSVTY LRLDGSIPPG QRHSIVSRFN
1710 1720 1730 1740 1750
NDPSIDVLLL TTHVGGLGLN LTGADTVVFV EHDWNPMRDL QAMDRAHRIG
1760 1770 1780 1790 1800
QKRVVNVYRL ITRGTLEEKI MGLQKFKMNI ANTVISQENS SLQSMGTDQL
1810 1820 1830 1840 1850
LDLFTLDKDG KAEKADSSTS GKASMKSVLE NLSDLWDAEQ YDSEYNLETF

MRSLE
Length:1,855
Mass (Da):207,722
Last modified:April 3, 2013 - v2
Checksum:iF449709F514D2B54
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC094246 Genomic DNA No translation available.
RefSeqiNP_001178846.1, NM_001191917.1
UniGeneiRn.1237

Genome annotation databases

EnsembliENSRNOT00000024465; ENSRNOP00000024465; ENSRNOG00000017938
GeneIDi368042
KEGGirno:368042

Similar proteinsi

Entry informationi

Entry nameiF1LW16_RAT
AccessioniPrimary (citable) accession number: F1LW16
Entry historyiIntegrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: April 3, 2013
Last modified: May 23, 2018
This is version 54 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

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