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F1LVT6 (F1LVT6_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified March 19, 2014. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length640 AA.
Sequence statusFragment.
Protein existencePredicted

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000031127

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 Ensembl ENSRNOP00000031127

Sequences

Sequence LengthMass (Da)Tools
F1LVT6 [UniParc].

Last modified May 3, 2011. Version 1.
Checksum: F04D58ABD0F4D66D

FASTA64072,256
        10         20         30         40         50         60 
LEDTADGVKM DAGEVTLVNH SSAFRAHLLP HSGFPEDQLA LSDQQILPFR QGTLHRAFTG 

        70         80         90        100        110        120 
STSSAAYNPD YHSDNPSSDS FLGSGDIRTF GQSANGQWRN STPASGSALQ KPRNSRSLYL 

       130        140        150        160        170        180 
ETRKTSSGLS NTFVGKSNHH CHVSAYEKSF PIKPAPSPSW SGSCRRSLLS PKKTQRRHFS 

       190        200        210        220        230        240 
TAEETVQEEE KEIYRQLLQM VTGKQFSVAK PTTHFPLHLS RCLSSNKNSL KDSLLRNGNS 

       250        260        270        280        290        300 
CASHVIGSDT SSSGSASILT AQEQLSHSAH SLISGTPDVA FGSKDSALHH HLSAPHQPDS 

       310        320        330        340        350        360 
LPASNPQSEG SDSVILLKVK ESQTPASSPT FFQAELWIKE LTSVYDSRAR ERLRQIEEQK 

       370        380        390        400        410        420 
ALALQLQNQR LQEQEHAVLD SVELHLRVPL EKEVPVTAAQ ETRKKSHQLT DSEDEFPEIT 

       430        440        450        460        470        480 
EEMEKEIKNV FRNGNQDEVL SEAFRLTITR KDIQTLNHLN WLNDEIINFY MNMLMERSKE 

       490        500        510        520        530        540 
KGFPSVHAFN TFFFTKLKAA GYQAVKRWTK KVDVFSVDIL LVPIHLGVHW CLAVVDFRKK 

       550        560        570        580        590        600 
SVTYYDSMGG VNNEACRILL QYLKQESVDK KRKEFDTNGW QLFSKKSQEI PQQMNGSDCG 

       610        620        630        640 
MFACKYADCI TKDRPINFTQ QHMPYFRKRM VWEILHRKLL 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000031127.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000031127.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AABR06052681 Genomic DNA. No translation available.
AABR06052682 Genomic DNA. No translation available.
AABR06052683 Genomic DNA. No translation available.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000030943; ENSRNOP00000031127; ENSRNOG00000022260.

Organism-specific databases

RGD1310275. Senp1.

Phylogenomic databases

GeneTreeENSGT00530000062941.
OMAVNHNSIF.
OrthoDBEOG7D59MP.
TreeFamTF316289.

Family and domain databases

InterProIPR003653. Peptidase_C48.
[Graphical view]
PfamPF02902. Peptidase_C48. 1 hit.
[Graphical view]
PROSITEPS50600. ULP_PROTEASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio35578219.
PROF1LVT6.

Entry information

Entry nameF1LVT6_RAT
AccessionPrimary (citable) accession number: F1LVT6
Entry history
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: March 19, 2014
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)