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Protein
Submitted name:

Protein Wdr19

Gene

Wdr19

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 3 out of 5-Protein predictedi

Functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

ReactomeiR-RNO-5610787. Hedgehog 'off' state.
R-RNO-5620924. Intraflagellar transport.

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Wdr19Imported
Gene namesi
Name:Wdr19Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 14

Organism-specific databases

RGDi1306997. Wdr19.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiF1LV01.
PRIDEiF1LV01.

PTM databases

iPTMnetiF1LV01.

Expressioni

Gene expression databases

GenevisibleiF1LV01. RN.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000003991.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini79 – 17597WD_REPEATS_REGIONInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG2247. Eukaryota.
ENOG410XR20. LUCA.
GeneTreeiENSGT00590000083165.
InParanoidiF1LV01.
KOiK19671.
OMAiCLHSDYA.
OrthoDBiEOG7FNC6X.
TreeFamiTF314758.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
2.130.10.10. 3 hits.
InterProiIPR011990. TPR-like_helical_dom.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
[Graphical view]
SMARTiSM00320. WD40. 5 hits.
[Graphical view]
SUPFAMiSSF48452. SSF48452. 1 hit.
PROSITEiPS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F1LV01-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRVFSLLEK TWLGAPIQFA WQKSSGNYLA VTGADSVVKI FDRHGQKRSE
60 70 80 90 100
ISLPGNCVAM DWDKDGDILA VIAEKSSCIY LWDANTNKTS QLDNGMRDQM
110 120 130 140 150
SFLLWSKIGS FLAVGTIKGN LLIYNHQTSR KIPVLGKHTK KITCGCWNTE
160 170 180 190 200
NLLALGGEDR MITVSNQEGD TIRQTPVKSE PSDIKFSTSK TDERISSAES
210 220 230 240 250
TISAVVGKKM LFLFHLNEPD NPVDLEFQQA YGNIVCYSWY GDGYIMIGFS
260 270 280 290 300
RGTFLAISTH FPEVGQEIFK TRDHKDNLTS VALSQTLNKA ATCGDNCIKI
310 320 330 340 350
HDLTELRDMY AIINLDDENK GLGTLSWTDD GQLLALSTQR GSLHVFLTKL
360 370 380 390 400
PILGDACHTR IAYLTSLLEV TVANLIEGEP PITVSVDVEP NFVAVGLYHL
410 420 430 440 450
AVGMNNRAWF YVLGENVVKK LKDVEYLGTV ASICLHSDYA AALFEGKIQL
460 470 480 490 500
HLIENEMLDA QEERETRLFP AVDDKCRILC HALTSDFLIY GTDTGIIQYF
510 520 530 540 550
FIEDWQFVND YRHPVGVKKL FPDPNGTRLV FIDEKSDGFV YCPVNDATYE
560 570 580 590 600
IPDFSPTIKG VLWENWPMDK GVFIAYDDDK VYTYVFHKDT IQGSKVILAG
610 620 630 640 650
GTKLPFSHKP LLLYNGELTC QTQSGKINSI YLSTHSFLDS VKDTEPPDLR
660 670 680 690 700
QMLMQTLMLK RFPDAWDICK MLNDRTSWSE LARACLHHME VEFAIRVSRT
710 720 730 740 750
MGDVGTVMSL EQIKGIEDYN LLAGHLAMFT NDFNLAQDLY LASNCPVAAL
760 770 780 790 800
EMRRDLQHWD SALQLAKRLA PDQIPFISKE YAIQLEFTGD YVNALAHYEK
810 820 830 840 850
GITGDNKEHD EVCLAGVAQM SIRMGDIRRG ANQALKHPSR VLKRDCGAIL
860 870 880 890 900
ENMKQFSEAA QLYEKGQYYD RAASVYIRCK NWAKVGELLP HVSSPKIHLQ
910 920 930 940 950
YAKAKEADGR YKEAVVAYEN AKQWNSVIRI YLDHLNNPEK AVSIVRETQS
960 970 980 990 1000
LDGAKMVARF FLQLGDYGSA IQFLVLSKCN NEAFTLAQQH NKMEIYADII
1010 1020 1030 1040 1050
GAEDTTNEDY QSIALYFEGE KRHFQAGKFF LLCGQYSRAL KHFLKCPSSE
1060 1070 1080 1090 1100
DNVAIEMAIE TVGQAKDELL TNQLIDHLMG ESDGMPKDAK YLFRLYMALK
1110 1120 1130 1140 1150
QYREAARTAI IIAREEQSAG NYRNAHDVLF SMYAELKSQK IKIPSEMATN
1160 1170 1180 1190 1200
LMILHSYILV KIHVKSGDHM KGARMLIRVA NNISKFPSHI VPILTSTVIE
1210 1220 1230 1240 1250
CHRAGLKNSA FSFAAMLMRP EYRNKIDAKY KKKIEAMVRR PDTSETEEAT
1260 1270 1280 1290 1300
TPCPFCQFLL PECELLCPGC KNNIPYCIAT GRHMLKDDWT MCPHCGFPAL
1310 1320 1330 1340
YSEFKILLNS ESTCPMCSER LNSSQLKKIT DCTQYLRTET E
Length:1,341
Mass (Da):151,476
Last modified:April 3, 2013 - v2
Checksum:iADB08F93295EAD77
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07015005 Genomic DNA. No translation available.
AABR07015006 Genomic DNA. No translation available.
RefSeqiNP_001178608.2. NM_001191679.2.
UniGeneiRn.18220.

Genome annotation databases

EnsembliENSRNOT00000003991; ENSRNOP00000003991; ENSRNOG00000002932.
GeneIDi305349.
KEGGirno:305349.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07015005 Genomic DNA. No translation available.
AABR07015006 Genomic DNA. No translation available.
RefSeqiNP_001178608.2. NM_001191679.2.
UniGeneiRn.18220.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000003991.

PTM databases

iPTMnetiF1LV01.

Proteomic databases

PaxDbiF1LV01.
PRIDEiF1LV01.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000003991; ENSRNOP00000003991; ENSRNOG00000002932.
GeneIDi305349.
KEGGirno:305349.

Organism-specific databases

CTDi57728.
RGDi1306997. Wdr19.

Phylogenomic databases

eggNOGiKOG2247. Eukaryota.
ENOG410XR20. LUCA.
GeneTreeiENSGT00590000083165.
InParanoidiF1LV01.
KOiK19671.
OMAiCLHSDYA.
OrthoDBiEOG7FNC6X.
TreeFamiTF314758.

Enzyme and pathway databases

ReactomeiR-RNO-5610787. Hedgehog 'off' state.
R-RNO-5620924. Intraflagellar transport.

Gene expression databases

GenevisibleiF1LV01. RN.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
2.130.10.10. 3 hits.
InterProiIPR011990. TPR-like_helical_dom.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
[Graphical view]
SMARTiSM00320. WD40. 5 hits.
[Graphical view]
SUPFAMiSSF48452. SSF48452. 1 hit.
PROSITEiPS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiF1LV01_RAT
AccessioniPrimary (citable) accession number: F1LV01
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: April 3, 2013
Last modified: July 6, 2016
This is version 47 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.