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Protein
Submitted name:

Protein Nckap5

Gene

Nckap5

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Nckap5Imported
Gene namesi
Name:Nckap5Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494 Componenti: Chromosome 13

Organism-specific databases

RGDi1564507. Nckap5.

PTM / Processingi

Proteomic databases

PRIDEiF1LU96.

Expressioni

Gene expression databases

ExpressionAtlasiF1LU96. baseline.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000029665.

Family & Domainsi

Phylogenomic databases

InParanoidiF1LU96.
OMAiDSLFGWE.
OrthoDBiEOG7PGDQM.
TreeFamiTF331208.

Family and domain databases

InterProiIPR026163. Nckap5l.
[Graphical view]
PANTHERiPTHR21740. PTHR21740. 1 hit.

Sequencei

Sequence statusi: Complete.

F1LU96-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDSNKCIEHL LAQLREQHRS LWREKLAVAR LQREVAQRTS QGAMQEKLIH
60 70 80 90 100
ELEEERQLRL QSEERLREVT LESERNRIQM LGLQQQFSRM EETVRSLLQS
110 120 130 140 150
QGSPEQKKEE PAKITAYQER VSEEERKEQA ALGDLRVEAD EDSRSEHSST
160 170 180 190 200
EGGKEDSRLL LKRLKALEAE NSALALENEN QREQYERCLD EVANQVVRAL
210 220 230 240 250
LTQKDLREEC VKLKTRVFDL EQQNRALSIL FQQRVRPASD VLLQEHLQNA
260 270 280 290 300
KSGAPALKHS GSGVVIPDHP CPRNSCSSGS ELSLSSTCSE YSSGSSYTWQ
310 320 330 340 350
DRKLNGKRQT SQIWDKRLSI DSSLPSGFTS PADELPPTRI KESHILEGLR
360 370 380 390 400
KLQKRKVLLE SPASVMSKWG YKDCMNSNEG IYSPGIKNSS LKECPPCQSP
410 420 430 440 450
GRGIPCQNLH QTFNYDANSH EYAHEEFLSS ASPRTSPSQG CRIQSSKLTH
460 470 480 490 500
SVSDSLFTWE PHRKYFAEGT ASVYTREMPE RLTRCASHCP LERKLCPSVH
510 520 530 540 550
LPWVQRDRDP HSQGPGHVPL NLQLSDTDDN ETLHELHIES SDERSPSDLS
560 570 580 590 600
LTGDTDRSME NLGVKFGKSE CVSHDKGKEE CPTHLETSPK AFSFIKQQRV
610 620 630 640 650
VKRTSSEECV TVIFDAENGE PVEFSSHQAG VVTVTRDEIS ISSTPAGPSE
660 670 680 690 700
ELTELSPQGI THFQPGATAR DYPFLGRPEE EPKTNIPKDE NGILTAPNDS
710 720 730 740 750
FNSPTTVTQN SPRPKLVKPT QGVAWQSNSR SVANMSVYTK QGLTKIPSRS
760 770 780 790 800
KISPQKSKLV DPMPTTLVPS SGLGTLAKTP ASPTGKLSQC TNAESPGTFC
810 820 830 840 850
DVQPESHIPK HPTQLPHIPK ISNKKNWVQC PKSQTAGIQS RHLMGKSDNG
860 870 880 890 900
ESPTRAKRCG SEPKTRMRSP SPPTPPGRSV SLLVRPSYDY PPLPSPAKPE
910 920 930 940 950
TKAPGDTVST GLKSPVLKGS SAPLVSSSPA MSEIQKKPSV ASRKSAFPTA
960 970 980 990 1000
LPSTQAVVHT RYPEHTSSSP FAVTAPGPTK VSPKRGIPKA PHPQALGTTH
1010 1020 1030 1040 1050
MDTDLQTPKT RPSSYELLEM TSCKNLSPGR KGQLSDSTVT PHRPSFSGPN
1060 1070 1080 1090 1100
EFLTPQVNST SSSSSSCRNQ GTSQGGQNPP EKGPKTRLPV GLRVLMKSPQ
1110 1120 1130 1140 1150
LLRKTSMVPG KQEKDSLNEA SRSSVTANKS NPEDSKDPAS LETSRDERTT
1160 1170 1180 1190 1200
ALLGLRGPES LARGLGLEST PPESLESSIS RDDGRDGVDS RAIKRSFSSS
1210 1220 1230 1240 1250
KPHLKPALGM NGAKARSQSF SFHLGEKPST PPIEGPGKIR TQIITNTAER
1260 1270 1280 1290 1300
GNSLTRQNIS MEGSPSKTPS VSTPDNLPNA GRPLGNPFSR QGSLCSTGSS
1310 1320 1330 1340 1350
SSQHGSPSKL PLRMLTRPEG LLTPEEEDQR FSTQEECPGR GVHEQSSSNH
1360 1370 1380 1390 1400
HRHPSSTLSD CPQSLQVPGR IQRPSNLETN GISKLETSGR HPDASPTGTS
1410 1420 1430 1440 1450
VVSPEAPLSP SIEEKVMLCI QENVEKGQAQ TKSASVEVKP RAGPSFTSWF
1460 1470 1480 1490 1500
GFRKSRLPAL SSRRMEASKS KVEKKDTKLK SERKKEKKKA EVQSKRENEL
1510 1520 1530 1540 1550
SRGTKKADGQ SPDDGLQNTE SLKATQDIYN QMKSEPRNRP SPAVSPTKDA
1560 1570 1580 1590 1600
FMTELLNRVD KRAALQTESG SKGVSCRSVL EGTSQGSCFA SGSVSTQGSQ
1610 1620 1630 1640 1650
KKNIKTKVDM EKPRESLGAE VDEDVREDEE DRVADAALQS HVIESNCQMR
1660 1670 1680 1690 1700
TLDSGIGTFP LPDSGNRSMG RYICQQDSPE DTDPLLPLQP APSMPSSARA
1710 1720 1730 1740 1750
QTLDREVPSS TDSQSSSEST IIHSVSDPSM MARGIRASQS HLPKPTTSGK
1760 1770 1780 1790 1800
TSFEKQNGAE SKATTGPSFE YAEDAVPSEP LSGWRGEDAT TENQVVVIPH
1810
PESPVERKSH D
Length:1,811
Mass (Da):198,166
Last modified:July 22, 2015 - v3
Checksum:iED08CFDB0CA80314
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07020817 Genomic DNA. No translation available.
AABR07020818 Genomic DNA. No translation available.
AABR07020819 Genomic DNA. No translation available.
AABR07020820 Genomic DNA. No translation available.
AABR07020821 Genomic DNA. No translation available.
AABR07020822 Genomic DNA. No translation available.
AABR07020823 Genomic DNA. No translation available.
AABR07020824 Genomic DNA. No translation available.
AABR07020825 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSRNOT00000038020; ENSRNOP00000029665; ENSRNOG00000021553.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07020817 Genomic DNA. No translation available.
AABR07020818 Genomic DNA. No translation available.
AABR07020819 Genomic DNA. No translation available.
AABR07020820 Genomic DNA. No translation available.
AABR07020821 Genomic DNA. No translation available.
AABR07020822 Genomic DNA. No translation available.
AABR07020823 Genomic DNA. No translation available.
AABR07020824 Genomic DNA. No translation available.
AABR07020825 Genomic DNA. No translation available.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000029665.

Proteomic databases

PRIDEiF1LU96.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000038020; ENSRNOP00000029665; ENSRNOG00000021553.

Organism-specific databases

RGDi1564507. Nckap5.

Phylogenomic databases

InParanoidiF1LU96.
OMAiDSLFGWE.
OrthoDBiEOG7PGDQM.
TreeFamiTF331208.

Miscellaneous databases

NextBioi35577685.

Gene expression databases

ExpressionAtlasiF1LU96. baseline.

Family and domain databases

InterProiIPR026163. Nckap5l.
[Graphical view]
PANTHERiPTHR21740. PTHR21740. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiF1LU96_RAT
AccessioniPrimary (citable) accession number: F1LU96
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: July 22, 2015
Last modified: July 22, 2015
This is version 23 of the entry and version 3 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.