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F1LU96 (F1LU96_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length1841 AA.
Sequence statusFragment.
Protein existencePredicted

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000029665

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 Ensembl ENSRNOP00000029665

Sequences

Sequence LengthMass (Da)Tools
F1LU96 [UniParc].

Last modified April 3, 2013. Version 2.
Checksum: F0DABAA5AB262B2E

FASTA1,841201,179
        10         20         30         40         50         60 
HEKLIHELEE ERQLRLQSEE RLREVTLESE RNRIQMLGLQ QQFSRMEETV RSLLQSQGSP 

        70         80         90        100        110        120 
EQKKEEPAKI TAYQERVSEE ERKEQAALGD LRVEADEDSR SEHSSTEGGK EDSRLLLKRL 

       130        140        150        160        170        180 
KALEAENSAL ALENENQREQ YERCLDEVAN QVVRALLTQK DLREECVKLK TRVFDLEQQN 

       190        200        210        220        230        240 
RALSILFQQR VRPASDVLLQ EHLQNAKSGA PALKHSGSGV VIPDHPCPRN SCSSGSELSL 

       250        260        270        280        290        300 
SSTCSEYSSG SSYTWQDRKL NGKRQTSQIW DKRLSIDSSL PSGFTSPADE LPPTRIKESH 

       310        320        330        340        350        360 
ILEGLRKLQK RKVLLESPAS VMSKWGYKDC MNSNEGIYSP GIKNSSLKEC PPCQSPGRGI 

       370        380        390        400        410        420 
PCQNLHQTFN YDANSHEYAH EEFLSSASPR TSPSQGCRIQ SSKLTHSVSD SLFTWEPHRK 

       430        440        450        460        470        480 
YFAEGTASVY TREMPERLTR CASHCPLERK LCPSVHLPWV QRDRDPHSQG PGHVPLNLQL 

       490        500        510        520        530        540 
SDTDDNETLH ELHIESSDER SPSDLSLTGD TDRSMENLGV KFGKSECVSH DKGKEECPTH 

       550        560        570        580        590        600 
LETSPKAFSF IKQQRVVKRT SSEECVTVIF DAENGEPVEF SSHQAGVVTV TRDEISISST 

       610        620        630        640        650        660 
PAGPSEELTE LSPQGITHFQ PGATARDYPF LGRPEEEPKT NIPKDENGIL TAPNDSFNSP 

       670        680        690        700        710        720 
TTVTQNSPRP KLVKPTQGVA WQSNSRSVAN MSVYTKQGLT KIPSRSKISP QKSKLVDPMP 

       730        740        750        760        770        780 
TTLVPSSGLG TLAKTPASPT GKLSQCTNAE SPGTFCDVQP ESHIPKHPTQ LPHIPKISNK 

       790        800        810        820        830        840 
KNWVQCPKSQ TAGIQSRHLM GKSDNGESPT RAKRCGSEPK TRMRSPSPPT PPGRSVSLLV 

       850        860        870        880        890        900 
RPSYDYPPLP SPAKPETKAP GDTVSTGLKS PVLKGSSAPL VSSSPAMSEI QKKPSVASRK 

       910        920        930        940        950        960 
SAFPTALPST QAVVHTRYPE HTSSSPFAVT APGPTKVSPK RGIPKAPHPQ ALGTTHMDTD 

       970        980        990       1000       1010       1020 
LQTPKTRPSS YELLEMTSCK NLSPGRKGQL SDSTVTPHRP SFSGPNEFLT PQVNSTSSSS 

      1030       1040       1050       1060       1070       1080 
SSCRNQGTSQ GGQNPPEKGP KTRLPVGLRV LMKSPQLLRK TSMVPGKQEK DSLNEASRSS 

      1090       1100       1110       1120       1130       1140 
VTANKSNPED SKDPASLETS RDERTTALLG LRGPESLARG LGLESTPPES LESSISRDDG 

      1150       1160       1170       1180       1190       1200 
RDGVDSRAIK RSFSSSKPHL KPALGMNGAK ARSQSFSFHL GEKPSTPPIE GPGKIRTQII 

      1210       1220       1230       1240       1250       1260 
TNTAERGNSL TRQNISMEGS PSKTPSVSTP DNLPNAGRPL GNPFSRQGSL CSTGSSSSQH 

      1270       1280       1290       1300       1310       1320 
GSPSKLPLRM LTRPEGLLTP EEEDQRFSTQ EECPGRGVHE QSSSNHHRHP SSTLSDCPQS 

      1330       1340       1350       1360       1370       1380 
LQVPGRIQRP SNLETNGISK LETSGRHPDA SPTGTSVVSP EAPLSPSIEE KVMLCIQENV 

      1390       1400       1410       1420       1430       1440 
EKGQAQTKSA SVEVKPRAGP SFTSWFGFRK SRLPALSSRR MEASKSKVEK KDTKLKSERK 

      1450       1460       1470       1480       1490       1500 
KEKKKAEVQS KRENELSRGT KKADGQSPDD GLQNTESLKA TQDIYNQMKS EPRNRPSPAV 

      1510       1520       1530       1540       1550       1560 
SPTKDAFMTE LLNRVDKRAA LQTESGSKGV SCRSVLEGTS QGSCFASGSV STQGSQKKNI 

      1570       1580       1590       1600       1610       1620 
KTKVDMEKPR ESLGAEVDED VREDEEDRVA DAALQSHVIE SNCQMRTLDS GIGTFPLPDS 

      1630       1640       1650       1660       1670       1680 
GNRSMGRYIC QQDSPEDTDP LLPLQPAPSM PSSARAQTLD REVPSSTDSQ SSSESTIIHS 

      1690       1700       1710       1720       1730       1740 
VSDPSMMARG IRASQSHLPK PTTSGKTSFE KQNGAESKAT TGPSFEYAED AVPSEPLSGW 

      1750       1760       1770       1780       1790       1800 
RGEDATTENQ ELKQVEETKE DPENRLSEIS LESFNKFNSN TVILLEKEQS PSEVEGQKEE 

      1810       1820       1830       1840 
KGKETEVSLS SSDRPGVDHV ESLSDSLYDS FSSCASQTSN A 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000029665.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000029665.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AABR06074412 Genomic DNA. No translation available.
AABR06074413 Genomic DNA. No translation available.
AABR06074414 Genomic DNA. No translation available.
AABR06074415 Genomic DNA. No translation available.
AABR06074416 Genomic DNA. No translation available.
AABR06074417 Genomic DNA. No translation available.
AABR06074418 Genomic DNA. No translation available.
AABR06074419 Genomic DNA. No translation available.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEF1LU96.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000038020; ENSRNOP00000029665; ENSRNOG00000021553.

Organism-specific databases

RGD1564507. Nckap5.

Phylogenomic databases

GeneTreeENSGT00530000063607.
OMADSLFGWE.
OrthoDBEOG7PGDQM.
TreeFamTF331208.

Family and domain databases

InterProIPR026163. Nckap5l.
[Graphical view]
PANTHERPTHR21740. PTHR21740. 1 hit.
ProtoNetSearch...

Other

NextBio35577685.

Entry information

Entry nameF1LU96_RAT
AccessionPrimary (citable) accession number: F1LU96
Entry history
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: April 3, 2013
Last modified: February 19, 2014
This is version 18 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)