F1LT11 (F1LT11_RAT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Protein Taf4b Ensembl ENSRNOP00000031359

Gene names

Name:

Taf4b Ensembl ENSRNOP00000031359 RGD 1562997

Organism

Rattus norvegicus (Rat) [Reference proteome] Ensembl ENSRNOP00000031359

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	802 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000031359

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	DNA-dependent transcription, initiation Inferred from electronic annotation. Source: InterPro
Cellular_component	nucleolus Inferred from electronic annotation. Source: Compara transcription factor TFIID complex Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: Compara sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F1LT11 [UniParc]. Last modified April 3, 2013. Version 2. Checksum: BD9FA08416061D5E	FASTA	802	83,613
	10 20 30 40 50 60 MPAGLTGPAG AAAPVVSSAS GTVTMAPVAA LPVRVESTPV ALCPVTKAPV NVCVDSVAPQ 70 80 90 100 110 120 SLPAPVGTLV TKVVPVTALP KLGGPRLPAP QIVTVKTPST TTIQLPANLQ LPPGTVLIKS 130 140 150 160 170 180 NSGQLMLVSP QQAVAGTKTT STITPRPAVP ANTQTVKICT VPNSSSQLMK KVTVAPVKSL 190 200 210 220 230 240 TQIGTTVATT ASSASSGQPV TVPSNVVTVT PAKPVNNVSI LKSSSLGILS TPSNDSSLKA 250 260 270 280 290 300 ETSVSAQTSL PPTVLENVKK CKNFLSMLIK LACSGSQSPE MGQNVKKLVE QLLDAEIEAE 310 320 330 340 350 360 EFTRKLYIEL KSAPQPHLVP FLKKSVVALR QLLPNSQSFT ENCVQEVSGD VVIPSCAMTT 370 380 390 400 410 420 ATSPAVTSTV SPVIVSGAAV PRTLSVQQTL NSLAGPGGAN TGVVTLHSVT PATATGGTTA 430 440 450 460 470 480 TTVLLQTPKP LTTPVPNTVA AVSLQPENPV VSGAAVALAV PSATLGEASA QALCLPSVKT 490 500 510 520 530 540 AITSAGTKAE KAAISTPVQI TLAQPGPLLP QSAGIPQAGK AKQLIVQQPS VGNANHVISI 550 560 570 580 590 600 SHSSPLSSQT CGQKAPVTAV MPTGKFPPSS IIKQISLPGN KLLSLQAQTT SIQNNKIKEN 610 620 630 640 650 660 GPACFRGEDD INDVTCMAEV NLDEENACIL ATHSDFVGKL IQSCKDEPFL LIGALQKRIL 670 680 690 700 710 720 DIGKKHDITE LNSDAVNLIS HATQERLRGL LEKLTAIAQH RMTIYKGSEN YILSTDTRSQ 730 740 750 760 770 780 LKFLEKLDQL EKQRKDLEER EMLLKAAKSR SNKEDPEQLR LKQKAKELQQ LELAQIQYRD 790 800 ANLTALAAIG PRKKRPLESG NE

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Genome sequence of the Brown Norway rat yields insights into mammalian evolution." Rat Genome Sequencing Project Consortium Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S. Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Brown Norway Ensembl ENSRNOP00000031359.
[2]	Ensembl Submitted (JUL-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: Brown Norway Ensembl ENSRNOP00000031359.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AABR06093835 Genomic DNA. No translation available. AABR06093836 Genomic DNA. No translation available.
IPI	IPI00958135.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSRNOT00000037955; ENSRNOP00000031359; ENSRNOG00000026023.
Organism-specific databases
RGD	1562997. Taf4b.
Phylogenomic databases
GeneTree	ENSGT00390000011620.
Family and domain databases
Gene3D	1.10.20.10. 1 hit.
InterPro	IPR009072. Histone-fold. IPR007900. TAF4. IPR003894. TAFH_NHR1. [Graphical view]
Pfam	PF05236. TAF4. 1 hit. PF07531. TAFH. 1 hit. [Graphical view]
SUPFAM	SSF47113. Histone-fold. 1 hit.
PROSITE	PS51119. TAFH. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	35577251.

Entry information

Entry name

F1LT11_RAT

Accession

Primary (citable) accession number: F1LT11

Entry history

Integrated into UniProtKB/TrEMBL:	May 3, 2011
Last sequence update:	April 3, 2013
Last modified:	May 1, 2013
This is version 19 of the entry and version 2 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)