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Protein
Submitted name:

Protein Taf4b

Gene

Taf4b

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

ReactomeiREACT_271824. RNA Polymerase II Promoter Escape.
REACT_273293. RNA Polymerase II Pre-transcription Events.
REACT_340454. RNA Polymerase II Transcription Pre-Initiation And Promoter Opening.
REACT_343213. RNA Polymerase II Transcription Initiation And Promoter Clearance.
REACT_351677. RNA Polymerase II Transcription Initiation.

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Taf4bImported
Gene namesi
Name:Taf4bImported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494 Componenti: Chromosome 18

Organism-specific databases

RGDi1562997. Taf4b.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000031359.

Structurei

3D structure databases

ProteinModelPortaliF1LT11.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

InParanoidiF1LT11.
OMAiAVKAPNT.
OrthoDBiEOG7327N5.
TreeFamiTF316520.

Family and domain databases

Gene3Di1.10.20.10. 1 hit.
InterProiIPR009072. Histone-fold.
IPR007900. TAF4.
IPR003894. TAFH_NHR1.
[Graphical view]
PfamiPF05236. TAF4. 1 hit.
PF07531. TAFH. 1 hit.
[Graphical view]
SUPFAMiSSF47113. SSF47113. 1 hit.
PROSITEiPS51119. TAFH. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F1LT11-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAPVAALPVR VESTPVALCP VTKAPVNVCV DSVAPQSLPA PVGTLVTKVV
60 70 80 90 100
PVTALPKLGG PRLPAPQIVT VKTPSTTTIQ LPANLQLPPG TVLIKSNSGQ
110 120 130 140 150
LMLVSPQQAV AGTKTTSTIT PRPAVPANTQ TVKICTVPNS SSQLMKKVTV
160 170 180 190 200
APVKSLTQIG TTVATTASSA SSGQPVTVPS NVVTVTPAKP VNNVSILKSS
210 220 230 240 250
SLGILSTPSN DSSLKAETSV SAQTSLPPTV LENVKKCKNF LSMLIKLACS
260 270 280 290 300
GSQSPEMGQN VKKLVEQLLD AEIEAEEFTR KLYIELKSAP QPHLVPFLKK
310 320 330 340 350
SVVALRQLLP NSQSFTENCV QEVSGDVVIP SCAMTTATSP AVTSTVSPVI
360 370 380 390 400
VSGAAVPRTL SVQQTLNSLA GPGGANTGVV TLHSVTPATA TGGTTATTVL
410 420 430 440 450
LQTPKPLTTP VPNTVAAVSL QPENPVVSGA AVALAVPSAT LGEASAQALC
460 470 480 490 500
LPSVKTAITS AGTKAEKAAI STPVQITLAQ PGPLLPQSAG IPQAGKAKQL
510 520 530 540 550
IVQQPSVGNA NHVISISHSS PLSSQTCGQK APVTAVMPTA SIIKQISLPG
560 570 580 590 600
NKLLSLQAQT TSIQNNKIKE NGPACFRGED DINDVTCMAE VNLDEENACI
610 620 630 640 650
LATHSDFVGK LIQSCKDEPF LLIGALQKRI LDIGKKHDIT ELNSDAVNLI
660 670 680 690 700
SHATQERLRG LLEKLTAIAQ HRMTIYKGSE NYILSTDTRS QLKFLEKLDQ
710 720 730 740 750
LEKQRKDLEE REMLLKAAKS RSNKEDPEQL RLKQKAKELQ QLELAQIQYR
760 770 780 790 800
DANLTALAAI GPRKKRPLES GNESFKDNPS ASGTCSLTAT RPLLRPRITR
810 820
VSLRDLIFCM EQERGMKYSR ALYLALLK
Length:828
Mass (Da):87,276
Last modified:July 22, 2015 - v3
Checksum:iC5F902F285396897
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07031259 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSRNOT00000037955; ENSRNOP00000031359; ENSRNOG00000026023.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07031259 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortaliF1LT11.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000031359.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000037955; ENSRNOP00000031359; ENSRNOG00000026023.

Organism-specific databases

RGDi1562997. Taf4b.

Phylogenomic databases

InParanoidiF1LT11.
OMAiAVKAPNT.
OrthoDBiEOG7327N5.
TreeFamiTF316520.

Enzyme and pathway databases

ReactomeiREACT_271824. RNA Polymerase II Promoter Escape.
REACT_273293. RNA Polymerase II Pre-transcription Events.
REACT_340454. RNA Polymerase II Transcription Pre-Initiation And Promoter Opening.
REACT_343213. RNA Polymerase II Transcription Initiation And Promoter Clearance.
REACT_351677. RNA Polymerase II Transcription Initiation.

Miscellaneous databases

NextBioi35577251.

Family and domain databases

Gene3Di1.10.20.10. 1 hit.
InterProiIPR009072. Histone-fold.
IPR007900. TAF4.
IPR003894. TAFH_NHR1.
[Graphical view]
PfamiPF05236. TAF4. 1 hit.
PF07531. TAFH. 1 hit.
[Graphical view]
SUPFAMiSSF47113. SSF47113. 1 hit.
PROSITEiPS51119. TAFH. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiF1LT11_RAT
AccessioniPrimary (citable) accession number: F1LT11
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: July 22, 2015
Last modified: July 22, 2015
This is version 34 of the entry and version 3 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.