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Protein
Submitted name:

TATA-box-binding protein-associated factor 4b

Gene

Taf4b

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Enzyme and pathway databases

ReactomeiR-RNO-674695 RNA Polymerase II Pre-transcription Events
R-RNO-6804756 Regulation of TP53 Activity through Phosphorylation
R-RNO-73776 RNA Polymerase II Promoter Escape
R-RNO-73779 RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
R-RNO-75953 RNA Polymerase II Transcription Initiation
R-RNO-76042 RNA Polymerase II Transcription Initiation And Promoter Clearance

Names & Taxonomyi

Protein namesi
Submitted name:
TATA-box-binding protein-associated factor 4bImported
Gene namesi
Name:Taf4bImported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 18

Organism-specific databases

RGDi1562997 Taf4b

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PaxDbiF1LT11
PRIDEiF1LT11

Expressioni

Gene expression databases

BgeeiENSRNOG00000026023

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000031359

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini231 – 328TAFHInterPro annotationAdd BLAST98

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili261 – 281Sequence analysisAdd BLAST21
Coiled coili691 – 721Sequence analysisAdd BLAST31
Coiled coili732 – 752Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG2341 Eukaryota
ENOG410XQS6 LUCA
GeneTreeiENSGT00390000011620
InParanoidiF1LT11
OMAiAQHRMTT
OrthoDBiEOG091G0GOS
TreeFamiTF316520

Family and domain databases

CDDicd08045 TAF4, 1 hit
Gene3Di1.10.20.10, 1 hit
1.20.120.1110, 1 hit
InterProiView protein in InterPro
IPR009072 Histone-fold
IPR007900 TAF4
IPR037249 TAFH/NHR1_dom_sf
IPR003894 TAFH_NHR1
PfamiView protein in Pfam
PF05236 TAF4, 1 hit
PF07531 TAFH, 1 hit
SMARTiView protein in SMART
SM00549 TAFH, 1 hit
SUPFAMiSSF158553 SSF158553, 1 hit
SSF47113 SSF47113, 1 hit
PROSITEiView protein in PROSITE
PS51119 TAFH, 1 hit

Sequencei

Sequence statusi: Complete.

F1LT11-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAPVAALPVR VESTPVALCP VTKAPVNVCV DSVAPQSLPA PVGTLVTKVV
60 70 80 90 100
PVTALPKLGG PRLPAPQIVT VKTPSTTTIQ LPANLQLPPG TVLIKSNSGQ
110 120 130 140 150
LMLVSPQQAV AGTKTTSTIT PRPAVPANTQ TVKICTVPNS SSQLMKKVTV
160 170 180 190 200
APVKSLTQIG TTVATTASSA SSGQPVTVPS NVVTVTPAKP VNNVSILKSS
210 220 230 240 250
SLGILSTPSN DSSLKAETSV SAQTSLPPTV LENVKKCKNF LSMLIKLACS
260 270 280 290 300
GSQSPEMGQN VKKLVEQLLD AEIEAEEFTR KLYIELKSAP QPHLVPFLKK
310 320 330 340 350
SVVALRQLLP NSQSFTENCV QEVSGDVVIP SCAMTTATSP AVTSTVSPVI
360 370 380 390 400
VSGAAVPRTL SVQQTLNSLA GPGGANTGVV TLHSVTPATA TGGTTATTVL
410 420 430 440 450
LQTPKPLTTP VPNTVAAVSL QPENPVVSGA AVALAVPSAT LGEASAQALC
460 470 480 490 500
LPSVKTAITS AGTKAEKAAI STPVQITLAQ PGPLLPQSAG IPQAGKAKQL
510 520 530 540 550
IVQQPSVGNA NHVISISHSS PLSSQTCGQK APVTAVMPTA SIIKQISLPG
560 570 580 590 600
NKLLSLQAQT TSIQNNKIKE NGPACFRGED DINDVTCMAE VNLDEENACI
610 620 630 640 650
LATHSDFVGK LIQSCKDEPF LLIGALQKRI LDIGKKHDIT ELNSDAVNLI
660 670 680 690 700
SHATQERLRG LLEKLTAIAQ HRMTIYKGSE NYILSTDTRS QLKFLEKLDQ
710 720 730 740 750
LEKQRKDLEE REMLLKAAKS RSNKEDPEQL RLKQKAKELQ QLELAQIQYR
760 770 780 790 800
DANLTALAAI GPRKKRPLES GNESFKDNPS ASGTCSLTAT RPLLRPRITR
810 820
VSLRDLIFCM EQERGMKYSR ALYLALLK
Length:828
Mass (Da):87,276
Last modified:July 22, 2015 - v3
Checksum:iC5F902F285396897
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07031259 Genomic DNA No translation available.

Genome annotation databases

EnsembliENSRNOT00000037955; ENSRNOP00000031359; ENSRNOG00000026023

Similar proteinsi

Entry informationi

Entry nameiF1LT11_RAT
AccessioniPrimary (citable) accession number: F1LT11
Entry historyiIntegrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: July 22, 2015
Last modified: May 23, 2018
This is version 54 of the entry and version 3 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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