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Protein
Submitted name:

Protein RGD1562997

Gene

Taf4b

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA binding Source: Ensembl
  2. sequence-specific DNA binding transcription factor activity Source: InterPro

GO - Biological processi

  1. DNA-templated transcription, initiation Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

ReactomeiREACT_216241. RNA Polymerase II Pre-transcription Events.
REACT_240071. RNA Polymerase II Transcription Initiation And Promoter Clearance.
REACT_247742. RNA Polymerase II Transcription Initiation.
REACT_255888. RNA Polymerase II Transcription Pre-Initiation And Promoter Opening.
REACT_258114. RNA Polymerase II Promoter Escape.

Names & Taxonomyi

Protein namesi
Submitted name:
Protein RGD1562997Imported
Gene namesi
Name:Taf4bImported
Synonyms:RGD1562997Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 18

Organism-specific databases

RGDi1562997. Taf4b.

Subcellular locationi

GO - Cellular componenti

  1. nucleolus Source: Ensembl
  2. transcription factor TFIID complex Source: InterPro
Complete GO annotation...

Structurei

3D structure databases

ProteinModelPortaliF1LT11.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00390000011620.
InParanoidiF1LT11.
OMAiAVKAPNT.
OrthoDBiEOG7327N5.
TreeFamiTF316520.

Family and domain databases

Gene3Di1.10.20.10. 1 hit.
InterProiIPR009072. Histone-fold.
IPR007900. TAF4.
IPR003894. TAFH_NHR1.
[Graphical view]
PfamiPF05236. TAF4. 1 hit.
PF07531. TAFH. 1 hit.
[Graphical view]
SUPFAMiSSF47113. SSF47113. 1 hit.
PROSITEiPS51119. TAFH. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F1LT11-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPAGLTGPAG AAAPVVSSAS GTVTMAPVAA LPVRVESTPV ALCPVTKAPV
60 70 80 90 100
NVCVDSVAPQ SLPAPVGTLV TKVVPVTALP KLGGPRLPAP QIVTVKTPST
110 120 130 140 150
TTIQLPANLQ LPPGTVLIKS NSGQLMLVSP QQAVAGTKTT STITPRPAVP
160 170 180 190 200
ANTQTVKICT VPNSSSQLMK KVTVAPVKSL TQIGTTVATT ASSASSGQPV
210 220 230 240 250
TVPSNVVTVT PAKPVNNVSI LKSSSLGILS TPSNDSSLKA ETSVSAQTSL
260 270 280 290 300
PPTVLENVKK CKNFLSMLIK LACSGSQSPE MGQNVKKLVE QLLDAEIEAE
310 320 330 340 350
EFTRKLYIEL KSAPQPHLVP FLKKSVVALR QLLPNSQSFT ENCVQEVSGD
360 370 380 390 400
VVIPSCAMTT ATSPAVTSTV SPVIVSGAAV PRTLSVQQTL NSLAGPGGAN
410 420 430 440 450
TGVVTLHSVT PATATGGTTA TTVLLQTPKP LTTPVPNTVA AVSLQPENPV
460 470 480 490 500
VSGAAVALAV PSATLGEASA QALCLPSVKT AITSAGTKAE KAAISTPVQI
510 520 530 540 550
TLAQPGPLLP QSAGIPQAGK AKQLIVQQPS VGNANHVISI SHSSPLSSQT
560 570 580 590 600
CGQKAPVTAV MPTGKFPPSS IIKQISLPGN KLLSLQAQTT SIQNNKIKEN
610 620 630 640 650
GPACFRGEDD INDVTCMAEV NLDEENACIL ATHSDFVGKL IQSCKDEPFL
660 670 680 690 700
LIGALQKRIL DIGKKHDITE LNSDAVNLIS HATQERLRGL LEKLTAIAQH
710 720 730 740 750
RMTIYKGSEN YILSTDTRSQ LKFLEKLDQL EKQRKDLEER EMLLKAAKSR
760 770 780 790 800
SNKEDPEQLR LKQKAKELQQ LELAQIQYRD ANLTALAAIG PRKKRPLESG

NE
Length:802
Mass (Da):83,613
Last modified:April 3, 2013 - v2
Checksum:iBD9FA08416061D5E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06093835 Genomic DNA. No translation available.
AABR06093836 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSRNOT00000037955; ENSRNOP00000031359; ENSRNOG00000026023.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06093835 Genomic DNA. No translation available.
AABR06093836 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortaliF1LT11.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000037955; ENSRNOP00000031359; ENSRNOG00000026023.

Organism-specific databases

RGDi1562997. Taf4b.

Phylogenomic databases

GeneTreeiENSGT00390000011620.
InParanoidiF1LT11.
OMAiAVKAPNT.
OrthoDBiEOG7327N5.
TreeFamiTF316520.

Enzyme and pathway databases

ReactomeiREACT_216241. RNA Polymerase II Pre-transcription Events.
REACT_240071. RNA Polymerase II Transcription Initiation And Promoter Clearance.
REACT_247742. RNA Polymerase II Transcription Initiation.
REACT_255888. RNA Polymerase II Transcription Pre-Initiation And Promoter Opening.
REACT_258114. RNA Polymerase II Promoter Escape.

Miscellaneous databases

NextBioi35577251.

Family and domain databases

Gene3Di1.10.20.10. 1 hit.
InterProiIPR009072. Histone-fold.
IPR007900. TAF4.
IPR003894. TAFH_NHR1.
[Graphical view]
PfamiPF05236. TAF4. 1 hit.
PF07531. TAFH. 1 hit.
[Graphical view]
SUPFAMiSSF47113. SSF47113. 1 hit.
PROSITEiPS51119. TAFH. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiF1LT11_RAT
AccessioniPrimary (citable) accession number: F1LT11
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: April 3, 2013
Last modified: January 7, 2015
This is version 31 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.