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F1LT11

- F1LT11_RAT

UniProt

F1LT11 - F1LT11_RAT

Protein
Submitted name:

Protein Taf4b

Gene

Taf4b

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 28 (01 Oct 2014)
      Sequence version 2 (03 Apr 2013)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. DNA binding Source: Ensembl
    2. sequence-specific DNA binding transcription factor activity Source: InterPro

    GO - Biological processi

    1. DNA-templated transcription, initiation Source: InterPro

    Enzyme and pathway databases

    ReactomeiREACT_216241. RNA Polymerase II Pre-transcription Events.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein Taf4bImported
    Gene namesi
    Name:Taf4bImported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 18

    Organism-specific databases

    RGDi1562997. Taf4b.

    Subcellular locationi

    GO - Cellular componenti

    1. nucleolus Source: Ensembl
    2. transcription factor TFIID complex Source: InterPro

    Structurei

    3D structure databases

    ProteinModelPortaliF1LT11.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00390000011620.
    OMAiAVKAPNT.
    OrthoDBiEOG7327N5.
    TreeFamiTF316520.

    Family and domain databases

    Gene3Di1.10.20.10. 1 hit.
    InterProiIPR009072. Histone-fold.
    IPR007900. TAF4.
    IPR003894. TAFH_NHR1.
    [Graphical view]
    PfamiPF05236. TAF4. 1 hit.
    PF07531. TAFH. 1 hit.
    [Graphical view]
    SUPFAMiSSF47113. SSF47113. 1 hit.
    PROSITEiPS51119. TAFH. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F1LT11-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPAGLTGPAG AAAPVVSSAS GTVTMAPVAA LPVRVESTPV ALCPVTKAPV    50
    NVCVDSVAPQ SLPAPVGTLV TKVVPVTALP KLGGPRLPAP QIVTVKTPST 100
    TTIQLPANLQ LPPGTVLIKS NSGQLMLVSP QQAVAGTKTT STITPRPAVP 150
    ANTQTVKICT VPNSSSQLMK KVTVAPVKSL TQIGTTVATT ASSASSGQPV 200
    TVPSNVVTVT PAKPVNNVSI LKSSSLGILS TPSNDSSLKA ETSVSAQTSL 250
    PPTVLENVKK CKNFLSMLIK LACSGSQSPE MGQNVKKLVE QLLDAEIEAE 300
    EFTRKLYIEL KSAPQPHLVP FLKKSVVALR QLLPNSQSFT ENCVQEVSGD 350
    VVIPSCAMTT ATSPAVTSTV SPVIVSGAAV PRTLSVQQTL NSLAGPGGAN 400
    TGVVTLHSVT PATATGGTTA TTVLLQTPKP LTTPVPNTVA AVSLQPENPV 450
    VSGAAVALAV PSATLGEASA QALCLPSVKT AITSAGTKAE KAAISTPVQI 500
    TLAQPGPLLP QSAGIPQAGK AKQLIVQQPS VGNANHVISI SHSSPLSSQT 550
    CGQKAPVTAV MPTGKFPPSS IIKQISLPGN KLLSLQAQTT SIQNNKIKEN 600
    GPACFRGEDD INDVTCMAEV NLDEENACIL ATHSDFVGKL IQSCKDEPFL 650
    LIGALQKRIL DIGKKHDITE LNSDAVNLIS HATQERLRGL LEKLTAIAQH 700
    RMTIYKGSEN YILSTDTRSQ LKFLEKLDQL EKQRKDLEER EMLLKAAKSR 750
    SNKEDPEQLR LKQKAKELQQ LELAQIQYRD ANLTALAAIG PRKKRPLESG 800
    NE 802
    Length:802
    Mass (Da):83,613
    Last modified:April 3, 2013 - v2
    Checksum:iBD9FA08416061D5E
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06093835 Genomic DNA. No translation available.
    AABR06093836 Genomic DNA. No translation available.

    Genome annotation databases

    EnsembliENSRNOT00000037955; ENSRNOP00000031359; ENSRNOG00000026023.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06093835 Genomic DNA. No translation available.
    AABR06093836 Genomic DNA. No translation available.

    3D structure databases

    ProteinModelPortali F1LT11.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000037955 ; ENSRNOP00000031359 ; ENSRNOG00000026023 .

    Organism-specific databases

    RGDi 1562997. Taf4b.

    Phylogenomic databases

    GeneTreei ENSGT00390000011620.
    OMAi AVKAPNT.
    OrthoDBi EOG7327N5.
    TreeFami TF316520.

    Enzyme and pathway databases

    Reactomei REACT_216241. RNA Polymerase II Pre-transcription Events.

    Miscellaneous databases

    NextBioi 35577251.

    Family and domain databases

    Gene3Di 1.10.20.10. 1 hit.
    InterProi IPR009072. Histone-fold.
    IPR007900. TAF4.
    IPR003894. TAFH_NHR1.
    [Graphical view ]
    Pfami PF05236. TAF4. 1 hit.
    PF07531. TAFH. 1 hit.
    [Graphical view ]
    SUPFAMi SSF47113. SSF47113. 1 hit.
    PROSITEi PS51119. TAFH. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiF1LT11_RAT
    AccessioniPrimary (citable) accession number: F1LT11
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 3, 2011
    Last sequence update: April 3, 2013
    Last modified: October 1, 2014
    This is version 28 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3