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F1LT11 (F1LT11_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified March 19, 2014. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length802 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000031359

Sequences

Sequence LengthMass (Da)Tools
F1LT11 [UniParc].

Last modified April 3, 2013. Version 2.
Checksum: BD9FA08416061D5E

FASTA80283,613
        10         20         30         40         50         60 
MPAGLTGPAG AAAPVVSSAS GTVTMAPVAA LPVRVESTPV ALCPVTKAPV NVCVDSVAPQ 

        70         80         90        100        110        120 
SLPAPVGTLV TKVVPVTALP KLGGPRLPAP QIVTVKTPST TTIQLPANLQ LPPGTVLIKS 

       130        140        150        160        170        180 
NSGQLMLVSP QQAVAGTKTT STITPRPAVP ANTQTVKICT VPNSSSQLMK KVTVAPVKSL 

       190        200        210        220        230        240 
TQIGTTVATT ASSASSGQPV TVPSNVVTVT PAKPVNNVSI LKSSSLGILS TPSNDSSLKA 

       250        260        270        280        290        300 
ETSVSAQTSL PPTVLENVKK CKNFLSMLIK LACSGSQSPE MGQNVKKLVE QLLDAEIEAE 

       310        320        330        340        350        360 
EFTRKLYIEL KSAPQPHLVP FLKKSVVALR QLLPNSQSFT ENCVQEVSGD VVIPSCAMTT 

       370        380        390        400        410        420 
ATSPAVTSTV SPVIVSGAAV PRTLSVQQTL NSLAGPGGAN TGVVTLHSVT PATATGGTTA 

       430        440        450        460        470        480 
TTVLLQTPKP LTTPVPNTVA AVSLQPENPV VSGAAVALAV PSATLGEASA QALCLPSVKT 

       490        500        510        520        530        540 
AITSAGTKAE KAAISTPVQI TLAQPGPLLP QSAGIPQAGK AKQLIVQQPS VGNANHVISI 

       550        560        570        580        590        600 
SHSSPLSSQT CGQKAPVTAV MPTGKFPPSS IIKQISLPGN KLLSLQAQTT SIQNNKIKEN 

       610        620        630        640        650        660 
GPACFRGEDD INDVTCMAEV NLDEENACIL ATHSDFVGKL IQSCKDEPFL LIGALQKRIL 

       670        680        690        700        710        720 
DIGKKHDITE LNSDAVNLIS HATQERLRGL LEKLTAIAQH RMTIYKGSEN YILSTDTRSQ 

       730        740        750        760        770        780 
LKFLEKLDQL EKQRKDLEER EMLLKAAKSR SNKEDPEQLR LKQKAKELQQ LELAQIQYRD 

       790        800 
ANLTALAAIG PRKKRPLESG NE 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000031359.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000031359.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AABR06093835 Genomic DNA. No translation available.
AABR06093836 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortalF1LT11.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000037955; ENSRNOP00000031359; ENSRNOG00000026023.

Organism-specific databases

RGD1562997. Taf4b.

Phylogenomic databases

GeneTreeENSGT00390000011620.
OMAAVKAPNT.
OrthoDBEOG7327N5.
TreeFamTF316520.

Family and domain databases

Gene3D1.10.20.10. 1 hit.
InterProIPR009072. Histone-fold.
IPR007900. TAF4.
IPR003894. TAFH_NHR1.
[Graphical view]
PfamPF05236. TAF4. 1 hit.
PF07531. TAFH. 1 hit.
[Graphical view]
SUPFAMSSF47113. SSF47113. 1 hit.
PROSITEPS51119. TAFH. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio35577251.

Entry information

Entry nameF1LT11_RAT
AccessionPrimary (citable) accession number: F1LT11
Entry history
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: April 3, 2013
Last modified: March 19, 2014
This is version 26 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)