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F1LSH3 (F1LSH3_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length711 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000011085

Sequences

Sequence LengthMass (Da)Tools
F1LSH3 [UniParc].

Last modified April 3, 2013. Version 2.
Checksum: 25DB9E205C0333A7

FASTA71181,867
        10         20         30         40         50         60 
MATSSVSKGC FVFKPDFKKR KISVPIEDYF NNEELDSEDS KLRFETYRLL WQRIKSETEQ 

        70         80         90        100        110        120 
LQEGLNENLF DNLVDFLQKS HSELQKNSGN WGSQMRLREI PTAALILGVN VTDHDVIFRS 

       130        140        150        160        170        180 
LTETLHNNVT PYVVSLQAKD CPDVKHFLQK LTSELIDCCV DRNSKEEKND KALRRTSYSM 

       190        200        210        220        230        240 
DSLSSWYSTV AQKTGPKMTS KKRATCSQWQ SPPVVLILKN MESFSTKVLQ DFIIISSQHL 

       250        260        270        280        290        300 
HEFPLILIFG IATSPVIIHR LLPHSVSSLL CIELFQSLSC KEHLTVVLDK LLLTPQFPFK 

       310        320        330        340        350        360 
LSKKALQVLT NIFLYHDFSI QNFIKGLKLS LLEHFYSQPL SVLCCDLSEA KKRINVFSVN 

       370        380        390        400        410        420 
QCEKIRRLPS FRRYVENQPL EKQVALLTNE TFLKEETQSL LEDLHVYHIN YFLVLRCLHN 

       430        440        450        460        470        480 
FTSSLPKYPL GRQIRELYCT CLEKKIWDSE EYESALQLLR MLAKDELMGI LEQCVKVLNS 

       490        500        510        520        530        540 
STEKQLSNTA QKIKGFLTQF QNLDDSKEEE DACGSQPKGL QKTDLYHLQK SLLEMKELRR 

       550        560        570        580        590        600 
TTKKPTKFEM LRENVINFID NLVRDYLLPP EGQPLHEVVY FSAANTLREH LNAAPRIALH 

       610        620        630        640        650        660 
TALNNPYYYL KNEALKSEEG CIPSVAPDIC IAYKLHLECS RLINLVDWSE AFATVVTAAE 

       670        680        690        700        710 
KMDTNSTVSE EMSEIIHARF IRAVSELELL GFIKPTKQKT DHVARLTWGG C 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000011085.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000011085.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AABR06036451 Genomic DNA. No translation available.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000011085; ENSRNOP00000011085; ENSRNOG00000008314.

Organism-specific databases

RGD1308457. Orc3.

Phylogenomic databases

GeneTreeENSGT00390000011376.
OMACFVFKPN.
OrthoDBEOG78PV8B.
TreeFamTF101093.

Family and domain databases

InterProIPR020795. ORC3.
[Graphical view]
PANTHERPTHR12748. PTHR12748. 1 hit.
PfamPF07034. ORC3_N. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio35577080.
PROF1LSH3.

Entry information

Entry nameF1LSH3_RAT
AccessionPrimary (citable) accession number: F1LSH3
Entry history
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: April 3, 2013
Last modified: February 19, 2014
This is version 21 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)