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Protein
Submitted name:

Protein Mxd1

Gene

Mxd1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Mxd1Imported
Gene namesi
Name:Mxd1Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 4

Organism-specific databases

RGDi1564525. Mxd1.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiF1LRY0.

Expressioni

Gene expression databases

BgeeiENSRNOG00000017720.
GenevisibleiF1LRY0. RN.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000023856.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini56 – 108BHLH (basic helix-loop-helix)InterPro annotationAdd BLAST53

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili105 – 139Sequence analysisAdd BLAST35

Sequence similaritiesi

Contains 1 basic helix-loop-helix (bHLH) domain.UniRule annotation

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiENOG410IPD6. Eukaryota.
ENOG4111X99. LUCA.
GeneTreeiENSGT00510000046360.
InParanoidiF1LRY0.
KOiK09114.
OMAiLQDNHKT.
OrthoDBiEOG091G0QBK.
TreeFamiTF315654.

Family and domain databases

Gene3Di4.10.280.10. 1 hit.
InterProiIPR011598. bHLH_dom.
[Graphical view]
PfamiPF00010. HLH. 1 hit.
[Graphical view]
SMARTiSM00353. HLH. 1 hit.
[Graphical view]
SUPFAMiSSF47459. SSF47459. 1 hit.
PROSITEiPS50888. BHLH. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F1LRY0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATAVGMNIQ LLLEAADYLE RREREAEHGY ASMLPYSSKD RDAFKRRNKP
60 70 80 90 100
KKNSTSSRST HNEMEKNRRA HLRLCLEKLK GLVPLGPESS RHTTLSLLTK
110 120 130 140 150
AKLHIKKLED CDRKAVHQID QLQREQRHLK RRLEKLGAER TRMDSVGSVV
160 170 180 190 200
SSERSDSDRE ELDVDVDVDV DVDVDVDVES TDYLNGDLGW SSSVSDSDER
210 220 230
GSMQSLGSDE GYSSASVKRA KLQDGHKAGP GL
Length:232
Mass (Da):26,077
Last modified:May 3, 2011 - v1
Checksum:i25E67EE1CFA8269A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC139642 Genomic DNA. No translation available.
RefSeqiNP_001094219.1. NM_001100749.1.
UniGeneiRn.19241.

Genome annotation databases

EnsembliENSRNOT00000023856; ENSRNOP00000023856; ENSRNOG00000017720.
GeneIDi362391.
KEGGirno:362391.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC139642 Genomic DNA. No translation available.
RefSeqiNP_001094219.1. NM_001100749.1.
UniGeneiRn.19241.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000023856.

Proteomic databases

PaxDbiF1LRY0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000023856; ENSRNOP00000023856; ENSRNOG00000017720.
GeneIDi362391.
KEGGirno:362391.

Organism-specific databases

CTDi4084.
RGDi1564525. Mxd1.

Phylogenomic databases

eggNOGiENOG410IPD6. Eukaryota.
ENOG4111X99. LUCA.
GeneTreeiENSGT00510000046360.
InParanoidiF1LRY0.
KOiK09114.
OMAiLQDNHKT.
OrthoDBiEOG091G0QBK.
TreeFamiTF315654.

Gene expression databases

BgeeiENSRNOG00000017720.
GenevisibleiF1LRY0. RN.

Family and domain databases

Gene3Di4.10.280.10. 1 hit.
InterProiIPR011598. bHLH_dom.
[Graphical view]
PfamiPF00010. HLH. 1 hit.
[Graphical view]
SMARTiSM00353. HLH. 1 hit.
[Graphical view]
SUPFAMiSSF47459. SSF47459. 1 hit.
PROSITEiPS50888. BHLH. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiF1LRY0_RAT
AccessioniPrimary (citable) accession number: F1LRY0
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: November 2, 2016
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.