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F1LRC5 (F1LRC5_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 15. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Homeobox protein cut-like 1 Ensembl ENSRNOP00000056243
Gene names
Name:Cux1 Ensembl ENSRNOP00000056243
OrganismRattus norvegicus (Rat) [Reference proteome] Ensembl ENSRNOP00000056243
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length1504 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Subcellular location

Nucleus By similarity RuleBase RU000682.

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000056243

Sequences

Sequence LengthMass (Da)Tools
F1LRC5 [UniParc].

Last modified April 3, 2013. Version 2.
Checksum: C1E3CBC4F6829D63

FASTA1,504164,541
        10         20         30         40         50         60 
MAANVGSMFQ YWKRFDLQQL QRELDATATV LANRQDESEQ SRKRLIEQSR EFKKNTPEDL 

        70         80         90        100        110        120 
RKQVAPLLKS FQGEIDALSK RSKEAEAAFL TVYKRLIDVP DPVPALDLGQ QLEIKVQRLH 

       130        140        150        160        170        180 
DIETENQKLR ETLEEYNKEF AEVKNQEVTI KALKEKIREY EQTLKSQAET IALEKEQKLQ 

       190        200        210        220        230        240 
NDFAEKERKL QETQMSTTSK LEEAEHKLQT LQTALEKTRT ELFDLKTKYD EETTAKADEI 

       250        260        270        280        290        300 
EMIMTDLERA NQRAEVAQRE AETLREQLSS ANHSLQLASQ IQKAPDVAIE VLTRSSLEVE 

       310        320        330        340        350        360 
LAAKEREIAQ LVEDVQRLQA SLTKLRENSA SQISQLEQQL NAKNSTLKQL EEKLKGQADY 

       370        380        390        400        410        420 
EDVKKELTTL KSMEFAPSEG AGTQDSTKPL EVLLLEKNRS LQSENATLRI SNSDLSGSAR 

       430        440        450        460        470        480 
RKGRDQPESR RPGPLPASPP PQLPRNTGEQ VSNTNGTHHF SPAGLSQDFF SSNLASPSLP 

       490        500        510        520        530        540 
LASTGKFALN SLLQRQLMQS FYSKAMQEAG STSTIFSTGP YSTNSISSPS PLQQSPDVNG 

       550        560        570        580        590        600 
MAPSPSQSES AGSISEGEEI DTAEIARQVK EQLIKHNIGQ RIFGHYVLGL SQGSVSEILA 

       610        620        630        640        650        660 
RPKPWNKLTV RGKEPFHKMK QFLSDEQNIL ALRSIQGRQR GNITTRIRAS ETGSDEAIKS 

       670        680        690        700        710        720 
ILEQAKRELQ VQKTAEPVQA SSTASSGNSD DAIRSILQQA RREMEAQQAA LDPALKPAPL 

       730        740        750        760        770        780 
SQPDLTILNP KLLSASPMST VSTYPPLAIS LKKTPAAPEA STSALPSAPA LKKEAQDAPT 

       790        800        810        820        830        840 
LDPPGSADAT PGVLRPVKNE LVRGSTWKDP WWNPVQPERR NLTTSEETKA DETNASGKEK 

       850        860        870        880        890        900 
TGSSQPRAER SQLQGPSATA EYWKEWPNAE SPYSQSSELS LTGASRSETP QNSPLPSSPI 

       910        920        930        940        950        960 
VPMAKPAKPS VPPLTPEQYE VYMYQEVDTI ELTRQVKEKL AKNGICQRIF GEKVLGLSQG 

       970        980        990       1000       1010       1020 
SVSDMLSRPK PWSKLTQKGR EPFIRMQLWL NGELGQGVLP VQGQQQGPVL HSVTSLQDPL 

      1030       1040       1050       1060       1070       1080 
QQGCVSSEST PKTSASCSPA PESPMSSSES VKSLTELVQQ PCPTIETSKE GKPPEPSDPP 

      1090       1100       1110       1120       1130       1140 
TSDSQPTTPL PLSGHSALSI QELVAMSPEL DTYGITKRVK EVLTDNNLGQ RLFGETILGL 

      1150       1160       1170       1180       1190       1200 
TQGSVSDLLA RPKPWHKLSL KGREPFVRMQ LWLNDPNNVE KLMDMKRMEK KAYMKRRHSS 

      1210       1220       1230       1240       1250       1260 
VSDSQPCEPP SVGIDYSQGA SPQPQHQLKK PRVVLAPEEK EALKRAYQQK PYPSPKTIEE 

      1270       1280       1290       1300       1310       1320 
LATQLNLKTS TVINWFHNYR SRIRRELFIE EIQAGSQGQA GASDSPSARS SRAAPSSEGD 

      1330       1340       1350       1360       1370       1380 
SCDGVEAADT EEPGGNIVAT KSQGGPAEVT AAPADREEAT QPAEKAKAQP LSSGTPGQDD 

      1390       1400       1410       1420       1430       1440 
GEDAGRSRPP PEGLADAPAP VPNLAAPAAG EDAATSATAP AMATEAPGAA RAGPAERSSA 

      1450       1460       1470       1480       1490       1500 
LPSTSAPANA PARRPSSLQS LFGLPEAAGA RDNPVRKKKA ANLNSIIHRL EKAASREEPI 


EWEF

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000056243.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000056243.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AABR06071155 Genomic DNA. No translation available.
IPIIPI00769084.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000059486; ENSRNOP00000056243; ENSRNOG00000001424.

Organism-specific databases

RGD620618. Cux1.

Phylogenomic databases

GeneTreeENSGT00530000063019.

Gene expression databases

ArrayExpressF1LRC5.

Family and domain databases

Gene3D1.10.10.60. 1 hit.
1.10.260.40. 3 hits.
InterProIPR003350. Hmoeo_CUT.
IPR017970. Homeobox_CS.
IPR001356. Homeodomain.
IPR009057. Homeodomain-like.
IPR010982. Lambda_DNA-bd_dom.
[Graphical view]
PfamPF02376. CUT. 3 hits.
PF00046. Homeobox. 1 hit.
[Graphical view]
SMARTSM00389. HOX. 1 hit.
[Graphical view]
SUPFAMSSF46689. Homeodomain_like. 1 hit.
SSF47413. Lambda_like_DNA. 3 hits.
PROSITEPS51042. CUT. 3 hits.
PS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio35576721.

Entry information

Entry nameF1LRC5_RAT
AccessionPrimary (citable) accession number: F1LRC5
Entry history
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: April 3, 2013
Last modified: May 1, 2013
This is version 15 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info