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F1LQW5

- F1LQW5_RAT

UniProt

F1LQW5 - F1LQW5_RAT

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Protein
Submitted name: Prominin-2
Gene
Prom2
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
Prominin-2Imported
Gene namesi
Name:Prom2Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 3

Organism-specific databases

RGDi621435. Prom2.

Subcellular locationi

GO - Cellular componenti

  1. integral component of membrane Source: InterPro
  2. plasma membrane Source: Ensembl
  3. prominosome Source: Ensembl
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00530000063586.
OMAiRYETYRW.
OrthoDBiEOG7TQV02.
TreeFamiTF324631.

Family and domain databases

InterProiIPR008795. Prominin.
[Graphical view]
PANTHERiPTHR22730. PTHR22730. 1 hit.
PfamiPF05478. Prominin. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F1LQW5-1 [UniParc]FASTAAdd to Basket

« Hide

MTRTLDLMVP LLGLSLGLAL SLPRAVAADC GSLGRVEHLA FAPVPGTEPT    50
APRVRAPWPL DSLYGTVRRF LSVVQLNPFP AELIKTLLND PSSVKTDEVV 100
RYEAGYVVCA VIAGLYLLLV PITGLCFCCC RCRRRCGGRV KTEHKAMACE 150
RGTLMTFLLL TTLMLLIGMV CAFATNQFTH SQTGPSVEAV PETLLSLRGL 200
VSDVPKKLQA VADQFSLPQK QVSKDLDGVG ENLGNIIHNQ LKSTVYPVLA 250
SVHGLGQALQ VSIDHLQSVN ATSVELREGQ QHLGPPVQAH RERLLALLQE 300
SWCHENCKGA LSQASALQLG ADFSQMPPVD DVLHRLQGVP EANFSSMVQE 350
ENATFNNLPI LVHMQMVSVV KDLKKALAEQ PEGVRMLAQA FPGSEATSRW 400
SQALEGLEQR SRPYLQDVQR YETYRWILGC VLCSAILLVV ICNLLGLSLG 450
IWGLFAREDP SHSETKGEAG ARFLMAGVAF SFLFAAPLIL LVFATFLVGG 500
NVQTLVCRSW ESGELYEFVD TPGNLPPSMN LSYLLGLRKN ISVFQAYRQC 550
KAGTALWKVL QLNDSYDLDK HLDIKQYTHK LQQELQSFKV DLKDLDLLNP 600
AARQNLEALQ SSGLEKIHYR DFLVQIQKPV VKTDMGQLAK ELEGLAQAHN 650
ESLRRQQLQE EARELRSLYQ EKVVPQENLV AKLNPSIRVL ESSAPKLQVN 700
TSDLLDIVAR LKGELPAQLN HILRNATECF LTREMGYFSQ YVTWVREEVT 750
QHIATCQPFS KALDDGHMIL CDMGQPLECL LVLPGLVHLL PHPQHHLRGQ 800
DLQVLPSHPE TAQLHQLRRD TALPYPQGHL PEAIEPTGQG DTWGFPVLLP 850
CLSLDQTTSV TSVPEPRLAS SAGLSPVPHL YSFCS 885
Length:885
Mass (Da):97,817
Last modified:April 3, 2013 - v2
Checksum:iA094B147FF2D747A
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06026107 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSRNOT00000020354; ENSRNOP00000020354; ENSRNOG00000014710.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06026107 Genomic DNA. No translation available.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000020354 ; ENSRNOP00000020354 ; ENSRNOG00000014710 .

Organism-specific databases

RGDi 621435. Prom2.

Phylogenomic databases

GeneTreei ENSGT00530000063586.
OMAi RYETYRW.
OrthoDBi EOG7TQV02.
TreeFami TF324631.

Miscellaneous databases

NextBioi 35576574.
PROi F1LQW5.

Family and domain databases

InterProi IPR008795. Prominin.
[Graphical view ]
PANTHERi PTHR22730. PTHR22730. 1 hit.
Pfami PF05478. Prominin. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiF1LQW5_RAT
AccessioniPrimary (citable) accession number: F1LQW5
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: April 3, 2013
Last modified: March 19, 2014
This is version 22 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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