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F1LQS7

- F1LQS7_RAT

UniProt

F1LQS7 - F1LQS7_RAT

Protein
Submitted name:

Agouti-signaling protein

Gene

Asip

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi
  1. Functioni

    GO - Biological processi

    1. adult feeding behavior Source: Ensembl
    2. generation of precursor metabolites and energy Source: Ensembl
    3. genetic imprinting Source: Ensembl
    4. hormone-mediated signaling pathway Source: InterPro
    5. melanin biosynthetic process Source: Ensembl
    6. melanosome organization Source: Ensembl
    7. melanosome transport Source: Ensembl
    8. regulation of molecular function, epigenetic Source: Ensembl

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Agouti-signaling proteinImported
    Gene namesi
    Name:AsipImported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 3

    Organism-specific databases

    RGDi2003. Asip.

    Subcellular locationi

    GO - Cellular componenti

    1. extracellular region Source: UniProtKB-KW

    Keywords - Cellular componenti

    SecretedSAAS annotation

    PTM / Processingi

    Keywords - PTMi

    Disulfide bondSAAS annotation

    Family & Domainsi

    Sequence similaritiesi

    Contains agouti domain.SAAS annotation

    Phylogenomic databases

    GeneTreeiENSGT00510000048661.
    OMAiCSCRVLN.
    OrthoDBiEOG79PJRV.
    TreeFamiTF330729.

    Family and domain databases

    Gene3Di4.10.760.10. 1 hit.
    InterProiIPR007733. Agouti.
    IPR027300. Agouti_dom.
    [Graphical view]
    PANTHERiPTHR16551. PTHR16551. 1 hit.
    PfamiPF05039. Agouti. 1 hit.
    [Graphical view]
    SMARTiSM00792. Agouti. 1 hit.
    [Graphical view]
    SUPFAMiSSF57055. SSF57055. 1 hit.
    PROSITEiPS60024. AGOUTI_1. 1 hit.
    PS51150. AGOUTI_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F1LQS7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MDVTRLLLAT LVGFLCFLTV HSHLVFEETL GDDRSNSLDF SSVSIVALNK    50
    KSKKISRKEA EKRKRSSKKK ASIKKVARPP PPSPCVATRD SCKPPAPACC 100
    NPCASCQCRF FGSACTCRVL NPNC 124
    Length:124
    Mass (Da):13,546
    Last modified:April 3, 2013 - v2
    Checksum:iF21FCA15746AC4CC
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06027158 Genomic DNA. No translation available.
    AABR06027159 Genomic DNA. No translation available.
    AABR06027160 Genomic DNA. No translation available.
    AABR06027161 Genomic DNA. No translation available.
    AABR06027162 Genomic DNA. No translation available.
    AABR06027163 Genomic DNA. No translation available.
    AABR06027164 Genomic DNA. No translation available.

    Genome annotation databases

    EnsembliENSRNOT00000023905; ENSRNOP00000023905; ENSRNOG00000017701.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06027158 Genomic DNA. No translation available.
    AABR06027159 Genomic DNA. No translation available.
    AABR06027160 Genomic DNA. No translation available.
    AABR06027161 Genomic DNA. No translation available.
    AABR06027162 Genomic DNA. No translation available.
    AABR06027163 Genomic DNA. No translation available.
    AABR06027164 Genomic DNA. No translation available.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000023905 ; ENSRNOP00000023905 ; ENSRNOG00000017701 .

    Organism-specific databases

    RGDi 2003. Asip.

    Phylogenomic databases

    GeneTreei ENSGT00510000048661.
    OMAi CSCRVLN.
    OrthoDBi EOG79PJRV.
    TreeFami TF330729.

    Miscellaneous databases

    NextBioi 35576539.

    Family and domain databases

    Gene3Di 4.10.760.10. 1 hit.
    InterProi IPR007733. Agouti.
    IPR027300. Agouti_dom.
    [Graphical view ]
    PANTHERi PTHR16551. PTHR16551. 1 hit.
    Pfami PF05039. Agouti. 1 hit.
    [Graphical view ]
    SMARTi SM00792. Agouti. 1 hit.
    [Graphical view ]
    SUPFAMi SSF57055. SSF57055. 1 hit.
    PROSITEi PS60024. AGOUTI_1. 1 hit.
    PS51150. AGOUTI_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiF1LQS7_RAT
    AccessioniPrimary (citable) accession number: F1LQS7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 3, 2011
    Last sequence update: April 3, 2013
    Last modified: October 1, 2014
    This is version 24 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3