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F1LQI4 (F1LQI4_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Aggrecan core protein Ensembl ENSRNOP00000044130
Gene names
Name:Acan Ensembl ENSRNOP00000044130 RGD 68358
OrganismRattus norvegicus (Rat) [Reference proteome] Ensembl ENSRNOP00000044130
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length2121 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 1 C-type lectin domain. SAAS SAAS001304

Contains 1 Ig-like V-type (immunoglobulin-like) domain.

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000044130

Ontologies

Keywords
   PTMDisulfide bond SAAS SAAS000538
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processcell adhesion

Inferred from electronic annotation. Source: InterPro

   Molecular_functioncarbohydrate binding

Inferred from electronic annotation. Source: InterPro

hyaluronic acid binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F1LQI4 [UniParc].

Last modified April 3, 2013. Version 2.
Checksum: 6DDD5BB2F6644FC8

FASTA2,121220,565
        10         20         30         40         50         60 
MTTLLLVFVT LRVIAAVISE EVPDHDNSLS VSIPQPSPLK ALLGTSLTIP CYFIDPMHPV 

        70         80         90        100        110        120 
TTAPSTAPLT PRIKWSRVSK EKEVVLLVAT EGQVRVNSIY QDKVSLPNYP AIPSDATLEI 

       130        140        150        160        170        180 
QNLRSNDSGI YRCEVMHGIE DSEATLEVIV KGIVFHYRAI STRYTLDFDR AQRACLQNSA 

       190        200        210        220        230        240 
IIATPEQLQA AYEDGFHQCD AGWLADQTVR YPIHTPREGC YGDKDEFPGV RTYGIRDTNE 

       250        260        270        280        290        300 
TYDVYCFAEE MEGEVFYATS PEKFTFQEAA NECRRLGARL ATTGQLYLAW QGGMDMCSAG 

       310        320        330        340        350        360 
WLADRSVRYP ISKARPNCGG NLLGVRTVYL HANQTGYPDP SSRYDAICYT GEDFVDIPEN 

       370        380        390        400        410        420 
FFGVGGEEDI TIQTVTWPDL ELPLPRNITE GEARGNVILT AKPIFDMSPT VSEPGEALTL 

       430        440        450        460        470        480 
APEVGTTVFP EAGERTEKTT RPWGFPEEAT RGPDSATAFA SEDLVVRVTI SPGAVEVPGQ 

       490        500        510        520        530        540 
PRLPGGVVFH YRPGSTRYSL TFEEAQQACI RTGAAIASPE QLQAAGYEQC DAGWLXXXTV 

       550        560        570        580        590        600 
XYPIVSPRTP CVGDKDSSPG VRTYGVRPSS ETYDVYCYVD KLEGEVFFAT QMEQFTFQEA 

       610        620        630        640        650        660 
QAFCAAQNAT LASTGQLYAA WSQGLDKCYA GWLADGTLRY PIVNPRPACG GDKPGVRTVY 

       670        680        690        700        710        720 
LYPNQTGLPD PLSKHHAFCF RGVSVAPSPG GTPTSPSDIE DWIVTRVEPG VDAVPLEPET 

       730        740        750        760        770        780 
TEVPYFTTEP EKQTEWEPAY TPVGTSPLPG IPPTWLPTVP AAEEHTESPS ASQEPSASQV 

       790        800        810        820        830        840 
PSTSEEPYTP SLAVPSGTEL PSSGDTSGAP DLSGDFTGST DTSGRLDSSG EPSGGSESGL 

       850        860        870        880        890        900 
PSGDLDSSGL GPTVSSGLPV ESGSASGDGE IPWSSTPTVG RLPSGGESLE GSASASGTGD 

       910        920        930        940        950        960 
LSGLPSGGEI TETSASGTEE ISGLPSGGDD LETSTSGIDG ASVLPTGRGG LETSASGVED 

       970        980        990       1000       1010       1020 
LSGLPSGEEG SETSTSGIED ISVLPTGESP ETSASGVGDL SGLPSGGESL ETSASGVEDV 

      1030       1040       1050       1060       1070       1080 
TQLPTERGGL ETSASGIEDI TVLPTGRENL ETSASGVEDV SGLPSGKEGL ETSASGIEDI 

      1090       1100       1110       1120       1130       1140 
SVFPTEAEGL ETSASGGYVS GIPSGEDGTE TSTSGVEGVS GLPSGGEGLE TSASGVEDLG 

      1150       1160       1170       1180       1190       1200 
LPTRDSLETS ASGVDVTGYP SGREDTETSV PGVGDDLSGL PSGQEGLETS ASGAEDLGGL 

      1210       1220       1230       1240       1250       1260 
PSGKEDLVGS ASGALDFGKL PSGTLGSGQT PEASGLPSGF SGEYSGVDIG SGPSSGLPDF 

      1270       1280       1290       1300       1310       1320 
SGLPSGFPTV SLVDSTLVEV ITATTASELE GRGTISVSGS GEESGPPLSE LDSSADISGL 

      1330       1340       1350       1360       1370       1380 
PSGTELSGQT SGSLDVSGET SGFFDVSGQP FGSSGTGEGT SGIPEVSGQP SGSPDTTEIS 

      1390       1400       1410       1420       1430       1440 
ELSGLSSGQP DVSGEGSGIL FGSGQSSGIT SVSGETSGIS DLSGQPSGFP VLSGTTPGTP 

      1450       1460       1470       1480       1490       1500 
DLASGAMSGS GDSSGITFVD TSLIEVTPTT FREEEGLGSV ELSGLPSGET DLSGTSGMVD 

      1510       1520       1530       1540       1550       1560 
VSGQSSGAID SSGLISPTPE FSGLPSGVAE VSGEVSGVET GSSLSSGAFD GSGLVSGFPT 

      1570       1580       1590       1600       1610       1620 
VSLVDRTLVE SITLAPTAQE AGEGPSSILE FSGAHSGTPD ISGDLSGSLD QSTWQPGWTE 

      1630       1640       1650       1660       1670       1680 
ASTEPPSSPY FSGDFSSTTD ASGESITAPT GSGETSGLPE VTLITSELVE GVTEPTVSQE 

      1690       1700       1710       1720       1730       1740 
LGHGPSMTYT PRLFEASGEA SASGDLGGPV TIFPGSGVEA SVPEGSSDPS AYPEAGVGVS 

      1750       1760       1770       1780       1790       1800 
AAPEASSQLS EFPDLHGITS ASRETDLEMT TPGTEVSSNP WTFQEGTREG SAAPEVSGES 

      1810       1820       1830       1840       1850       1860 
STTSDIDAGT SGVPFATPMT SGDRTEISGE WSDHTSEVNV TVSTTVPESR WAQSTQHPTE 

      1870       1880       1890       1900       1910       1920 
TLQEIGSPNP SYSGEETQTA ETAKSLTDTP TLASPEGSGE TESTAADQEQ CEEGWTKFQG 

      1930       1940       1950       1960       1970       1980 
HCYRHFPDRE TWVDAERRCR EQQSHLSSIV TPEEQEFVNK NAQDYQWIGL NDRTIEGDFR 

      1990       2000       2010       2020       2030       2040 
WSDGHSLQFE KWRPNQPDNF FATGEDCVVM IWHERGEWND VPCNYQLPFT CKKGTVACGE 

      2050       2060       2070       2080       2090       2100 
PPAVEHARTL GQKKDRYEIS SLVRYQCTEG FVQRHVPTIR CQPSGHWEEP RITCTDPNTY 

      2110       2120 
KHRLQKRSMR PTRRSRPSMA H

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000044130.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000044130.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AABR06006559 Genomic DNA. No translation available.
AABR06006560 Genomic DNA. No translation available.
IPIIPI01016459.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000049681; ENSRNOP00000044130; ENSRNOG00000028992.

Organism-specific databases

RGD68358. Acan.

Phylogenomic databases

GeneTreeENSGT00670000097775.

Gene expression databases

ArrayExpressF1LQI4.

Family and domain databases

Gene3D2.60.40.10. 1 hit.
3.10.100.10. 5 hits.
InterProIPR001304. C-type_lectin.
IPR016186. C-type_lectin-like.
IPR018378. C-type_lectin_CS.
IPR016187. C-type_lectin_fold.
IPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003006. Ig/MHC_CS.
IPR013106. Ig_V-set.
IPR003596. Ig_V-set_subgr.
IPR000538. Link.
IPR000436. Sushi_SCR_CCP.
[Graphical view]
PfamPF00059. Lectin_C. 1 hit.
PF00084. Sushi. 1 hit.
PF07686. V-set. 1 hit.
PF00193. Xlink. 4 hits.
[Graphical view]
PRINTSPR01265. LINKMODULE.
SMARTSM00032. CCP. 1 hit.
SM00034. CLECT. 1 hit.
SM00406. IGv. 1 hit.
SM00445. LINK. 4 hits.
[Graphical view]
SUPFAMSSF56436. C-type_lectin_fold. 5 hits.
SSF57535. Complement_control_module. 1 hit.
PROSITEPS00615. C_TYPE_LECTIN_1. 1 hit.
PS50041. C_TYPE_LECTIN_2. 1 hit.
PS50835. IG_LIKE. 1 hit.
PS00290. IG_MHC. 1 hit.
PS01241. LINK_1. 3 hits.
PS50963. LINK_2. 4 hits.
PS50923. SUSHI. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio35576452.

Entry information

Entry nameF1LQI4_RAT
AccessionPrimary (citable) accession number: F1LQI4
Entry history
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: April 3, 2013
Last modified: May 1, 2013
This is version 20 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info