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F1LQI4

- F1LQI4_RAT

UniProt

F1LQI4 - F1LQI4_RAT

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Protein
Submitted name: Aggrecan core protein
Gene
Acan
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. carbohydrate binding Source: InterPro
  2. hyaluronic acid binding Source: InterPro

GO - Biological processi

  1. cell adhesion Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Aggrecan core proteinImported
Gene namesi
Name:AcanImported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 1

Organism-specific databases

RGDi68358. Acan.

PTM / Processingi

Keywords - PTMi

Disulfide bondSAAS annotations

Family & Domainsi

Sequence similaritiesi

Contains C-type lectin domain.SAAS annotations

Keywords - Domaini

Immunoglobulin domainSAAS annotations

Phylogenomic databases

GeneTreeiENSGT00750000117329.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
3.10.100.10. 5 hits.
InterProiIPR001304. C-type_lectin.
IPR016186. C-type_lectin-like.
IPR018378. C-type_lectin_CS.
IPR016187. C-type_lectin_fold.
IPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003006. Ig/MHC_CS.
IPR013106. Ig_V-set.
IPR003596. Ig_V-set_subgr.
IPR000538. Link.
IPR000436. Sushi_SCR_CCP.
[Graphical view]
PfamiPF00059. Lectin_C. 1 hit.
PF00084. Sushi. 1 hit.
PF07686. V-set. 1 hit.
PF00193. Xlink. 4 hits.
[Graphical view]
PRINTSiPR01265. LINKMODULE.
SMARTiSM00032. CCP. 1 hit.
SM00034. CLECT. 1 hit.
SM00406. IGv. 1 hit.
SM00445. LINK. 4 hits.
[Graphical view]
SUPFAMiSSF56436. SSF56436. 5 hits.
SSF57535. SSF57535. 1 hit.
PROSITEiPS00615. C_TYPE_LECTIN_1. 1 hit.
PS50041. C_TYPE_LECTIN_2. 1 hit.
PS50835. IG_LIKE. 1 hit.
PS00290. IG_MHC. 1 hit.
PS01241. LINK_1. 3 hits.
PS50963. LINK_2. 4 hits.
PS50923. SUSHI. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F1LQI4-1 [UniParc]FASTAAdd to Basket

« Hide

MTTLLLVFVT LRVIAAVISE EVPDHDNSLS VSIPQPSPLK ALLGTSLTIP     50
CYFIDPMHPV TTAPSTAPLT PRIKWSRVSK EKEVVLLVAT EGQVRVNSIY 100
QDKVSLPNYP AIPSDATLEI QNLRSNDSGI YRCEVMHGIE DSEATLEVIV 150
KGIVFHYRAI STRYTLDFDR AQRACLQNSA IIATPEQLQA AYEDGFHQCD 200
AGWLADQTVR YPIHTPREGC YGDKDEFPGV RTYGIRDTNE TYDVYCFAEE 250
MEGEVFYATS PEKFTFQEAA NECRRLGARL ATTGQLYLAW QGGMDMCSAG 300
WLADRSVRYP ISKARPNCGG NLLGVRTVYL HANQTGYPDP SSRYDAICYT 350
GEDFVDIPEN FFGVGGEEDI TIQTVTWPDL ELPLPRNITE GEARGNVILT 400
AKPIFDMSPT VSEPGEALTL APEVGTTVFP EAGERTEKTT RPWGFPEEAT 450
RGPDSATAFA SEDLVVRVTI SPGAVEVPGQ PRLPGGVVFH YRPGSTRYSL 500
TFEEAQQACI RTGAAIASPE QLQAAGYEQC DAGWLXXXTV XYPIVSPRTP 550
CVGDKDSSPG VRTYGVRPSS ETYDVYCYVD KLEGEVFFAT QMEQFTFQEA 600
QAFCAAQNAT LASTGQLYAA WSQGLDKCYA GWLADGTLRY PIVNPRPACG 650
GDKPGVRTVY LYPNQTGLPD PLSKHHAFCF RGVSVAPSPG GTPTSPSDIE 700
DWIVTRVEPG VDAVPLEPET TEVPYFTTEP EKQTEWEPAY TPVGTSPLPG 750
IPPTWLPTVP AAEEHTESPS ASQEPSASQV PSTSEEPYTP SLAVPSGTEL 800
PSSGDTSGAP DLSGDFTGST DTSGRLDSSG EPSGGSESGL PSGDLDSSGL 850
GPTVSSGLPV ESGSASGDGE IPWSSTPTVG RLPSGGESLE GSASASGTGD 900
LSGLPSGGEI TETSASGTEE ISGLPSGGDD LETSTSGIDG ASVLPTGRGG 950
LETSASGVED LSGLPSGEEG SETSTSGIED ISVLPTGESP ETSASGVGDL 1000
SGLPSGGESL ETSASGVEDV TQLPTERGGL ETSASGIEDI TVLPTGRENL 1050
ETSASGVEDV SGLPSGKEGL ETSASGIEDI SVFPTEAEGL ETSASGGYVS 1100
GIPSGEDGTE TSTSGVEGVS GLPSGGEGLE TSASGVEDLG LPTRDSLETS 1150
ASGVDVTGYP SGREDTETSV PGVGDDLSGL PSGQEGLETS ASGAEDLGGL 1200
PSGKEDLVGS ASGALDFGKL PSGTLGSGQT PEASGLPSGF SGEYSGVDIG 1250
SGPSSGLPDF SGLPSGFPTV SLVDSTLVEV ITATTASELE GRGTISVSGS 1300
GEESGPPLSE LDSSADISGL PSGTELSGQT SGSLDVSGET SGFFDVSGQP 1350
FGSSGTGEGT SGIPEVSGQP SGSPDTTEIS ELSGLSSGQP DVSGEGSGIL 1400
FGSGQSSGIT SVSGETSGIS DLSGQPSGFP VLSGTTPGTP DLASGAMSGS 1450
GDSSGITFVD TSLIEVTPTT FREEEGLGSV ELSGLPSGET DLSGTSGMVD 1500
VSGQSSGAID SSGLISPTPE FSGLPSGVAE VSGEVSGVET GSSLSSGAFD 1550
GSGLVSGFPT VSLVDRTLVE SITLAPTAQE AGEGPSSILE FSGAHSGTPD 1600
ISGDLSGSLD QSTWQPGWTE ASTEPPSSPY FSGDFSSTTD ASGESITAPT 1650
GSGETSGLPE VTLITSELVE GVTEPTVSQE LGHGPSMTYT PRLFEASGEA 1700
SASGDLGGPV TIFPGSGVEA SVPEGSSDPS AYPEAGVGVS AAPEASSQLS 1750
EFPDLHGITS ASRETDLEMT TPGTEVSSNP WTFQEGTREG SAAPEVSGES 1800
STTSDIDAGT SGVPFATPMT SGDRTEISGE WSDHTSEVNV TVSTTVPESR 1850
WAQSTQHPTE TLQEIGSPNP SYSGEETQTA ETAKSLTDTP TLASPEGSGE 1900
TESTAADQEQ CEEGWTKFQG HCYRHFPDRE TWVDAERRCR EQQSHLSSIV 1950
TPEEQEFVNK NAQDYQWIGL NDRTIEGDFR WSDGHSLQFE KWRPNQPDNF 2000
FATGEDCVVM IWHERGEWND VPCNYQLPFT CKKGTVACGE PPAVEHARTL 2050
GQKKDRYEIS SLVRYQCTEG FVQRHVPTIR CQPSGHWEEP RITCTDPNTY 2100
KHRLQKRSMR PTRRSRPSMA H 2121
Length:2,121
Mass (Da):220,565
Last modified:April 3, 2013 - v2
Checksum:i6DDD5BB2F6644FC8
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06006559 Genomic DNA. No translation available.
AABR06006560 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSRNOT00000049681; ENSRNOP00000044130; ENSRNOG00000028992.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06006559 Genomic DNA. No translation available.
AABR06006560 Genomic DNA. No translation available.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000049681 ; ENSRNOP00000044130 ; ENSRNOG00000028992 .

Organism-specific databases

RGDi 68358. Acan.

Phylogenomic databases

GeneTreei ENSGT00750000117329.

Miscellaneous databases

NextBioi 35576452.

Family and domain databases

Gene3Di 2.60.40.10. 1 hit.
3.10.100.10. 5 hits.
InterProi IPR001304. C-type_lectin.
IPR016186. C-type_lectin-like.
IPR018378. C-type_lectin_CS.
IPR016187. C-type_lectin_fold.
IPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003006. Ig/MHC_CS.
IPR013106. Ig_V-set.
IPR003596. Ig_V-set_subgr.
IPR000538. Link.
IPR000436. Sushi_SCR_CCP.
[Graphical view ]
Pfami PF00059. Lectin_C. 1 hit.
PF00084. Sushi. 1 hit.
PF07686. V-set. 1 hit.
PF00193. Xlink. 4 hits.
[Graphical view ]
PRINTSi PR01265. LINKMODULE.
SMARTi SM00032. CCP. 1 hit.
SM00034. CLECT. 1 hit.
SM00406. IGv. 1 hit.
SM00445. LINK. 4 hits.
[Graphical view ]
SUPFAMi SSF56436. SSF56436. 5 hits.
SSF57535. SSF57535. 1 hit.
PROSITEi PS00615. C_TYPE_LECTIN_1. 1 hit.
PS50041. C_TYPE_LECTIN_2. 1 hit.
PS50835. IG_LIKE. 1 hit.
PS00290. IG_MHC. 1 hit.
PS01241. LINK_1. 3 hits.
PS50963. LINK_2. 4 hits.
PS50923. SUSHI. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiF1LQI4_RAT
AccessioniPrimary (citable) accession number: F1LQI4
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: April 3, 2013
Last modified: July 9, 2014
This is version 27 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

Similar proteinsi