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F1LQC3 (F1LQC3_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
Collagen alpha-1(XII) chain Ensembl ENSRNOP00000051534
Gene names
Name:Col12a1 Ensembl ENSRNOP00000051534
OrganismRattus norvegicus (Rat) [Reference proteome] Ensembl ENSRNOP00000051534
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length1930 AA.
Sequence statusFragment.
Protein existenceEvidence at transcript level

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000051534

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 Ensembl ENSRNOP00000051534

Sequences

Sequence LengthMass (Da)Tools
F1LQC3 [UniParc].

Last modified April 3, 2013. Version 2.
Checksum: 60C26A83DD8D85BF

FASTA1,930209,573
        10         20         30         40         50         60 
GMECLTRAEA DIVLLVDGSW SIGRANFRTV RSFISRIVEV FEIGPKRVQI ALAQYSGDPR 

        70         80         90        100        110        120 
TEWHLNAHRD KKSLLQAVAN LPYKGGNTLT GMALNFIRQQ SFKTQAGMRP RARKIGVLIT 

       130        140        150        160        170        180 
DGKSQDDVEA PSKKLKDEGV ELFAIGIKNA DEVELKMIAT DPDDIHAYNV ADFESLSKIV 

       190        200        210        220        230        240 
DDLTINLCNS VKGPGDLEAP SNLVISERTH RSFRVSWTPP SDSVDRYKVE YYPVSGGKRQ 

       250        260        270        280        290        300 
EFYVSRLETS TVLKDLKPET EYVVNVYSVV EDEYSEPLKG TEKTLPVPVV SLNIYDIGPT 

       310        320        330        340        350        360 
TMHVQWQPVG GATGYTVSYQ PTRSPEGTKP KEMRVGPTVN DVQLTGLLPN TEYEVTVQAV 

       370        380        390        400        410        420 
LHDLTSEPAK AREATLPLPR PQDVKIRDVT HSTMNVIWEP VLGKVRKYTV RYKTPEEEFK 

       430        440        450        460        470        480 
EVEVDRSRTS TTLKDLSSQT QYTVSVSAVY DEGTSPPATA HETTRPVPAP TNLQFTEVTP 

       490        500        510        520        530        540 
ESFRGTWDHG ASDVSLYRIT WAPVGNPDKL ETILNGDENT LLFENLDPNT LYDVSITAIY 

       550        560        570        580        590        600 
PDESESEDLS GSERTLRLIP LTTQAPKSGP RNLQVYNATS NSLTVKWDPA SGRVQKYRIT 

       610        620        630        640        650        660 
YQPSTGEGNE QTTTVGGRQN SVVLQKLKPD SPYTITVSSQ YPDGEGGRMT GRGKTKPLNT 

       670        680        690        700        710        720 
VRNLRVYDPS TSTLSVRWDH AEGNPRQYKL FYAPAGGPEE LVPIPGNTNY AILRNLQPDT 

       730        740        750        760        770        780 
PYTVTVVPVY AEGDGGRTSD TGRTLVRGLA RNVQVYNPTP NSLDVRWDSA PGPVQQYRIV 

       790        800        810        820        830        840 
YSPVAGTRPS ESIVVPGNTR TVHLERLIPD TPYSVNIVAL YSDGEGNPSP GQGRTLPRSG 

       850        860        870        880        890        900 
PRNLRVFGET TNSLSVAWDH ADGPVQQYRI IYSPIVGDPI DEYTTVPGRR NNVILQPLQP 

       910        920        930        940        950        960 
DTPYKITVIA IYEDGDGGHL TGNGRTVGLL PPQNMHISDE WYTRFRVSWD PSPSPVLGYK 

       970        980        990       1000       1010       1020 
IVYKPVGSNE PMEAFVGEVT SYTLHNLNPS TTYDVSVYAQ YDSGLSVPLT DQGTTLYLNV 

      1030       1040       1050       1060       1070       1080 
TDLKTYQVGW DTFCVKWSPH RAATSYRLKL SPADGTRGQE ITVRGSETSH CFTGLSPEAE 

      1090       1100       1110       1120       1130       1140 
YGVTVFVQTP NLEGPGVPIK EQTTVKPTEA PTEPPTPSPP PTIPPARDVC KGAKADIVFL 

      1150       1160       1170       1180       1190       1200 
TDASWSIGDD NFNKVVKFIF NTVGAFDEIS PAGIQVSFVQ YSDEVKSEFK LNTYNDKALA 

      1210       1220       1230       1240       1250       1260 
LGALQNIRYR GGNTRTGKAL TFIKEKVLTW ESGMRKNVPK VLVVVTDGRS QDEVKKAAFI 

      1270       1280       1290       1300       1310       1320 
IQQSGFSVFV VGVADVDYNE LANIASKPSE RHVFIVDDFE SFEKIEDNLI TFVCETATSS 

      1330       1340       1350       1360       1370       1380 
CPLVYLDGYT SPGFKMLEAY NLTEKNFASV QGVSLESGSF PSYSAYRLQK NAFINQPTAE 

      1390       1400       1410       1420       1430       1440 
LHPNGLPPSY TIILLFRLLP ETPSDPFAIW QITDRDYRPQ VGVIADPSSK TLSFFNKDTR 

      1450       1460       1470       1480       1490       1500 
GEVQTVTFDA DEAKTLFYGS FHKVHIVVTS KSVKIYIDCY EIVEKDIKEA GNITTDGYEI 

      1510       1520       1530       1540       1550       1560 
LGKLLKGERK SATFQIQSFD IICSPVWTSR DRCCDIPSRR DEAKCPALPN ACTCTQDSVG 

      1570       1580       1590       1600       1610       1620 
PPGPPGPAGG PGAKGPRGER GINGAVGPPG PRGDTGPPGP QGPPGPQGPN GLSIPGEQGR 

      1630       1640       1650       1660       1670       1680 
QGMKGDAGEP GLPGRTGTPG LPGPPGPMGP PGDRGFTGKD GAMGPRGPPG PPGTPGSPGV 

      1690       1700       1710       1720       1730       1740 
TGPSGKPGKP GDHGRPGQSG LKGEKGDRGD IASQNMMRAV ARQVCEQLIS GQMSRFNQML 

      1750       1760       1770       1780       1790       1800 
NQIPNDYHSN RNQPGPPGPP GPPGSAGARG EPGPGGRPGF PGTPGMQGPQ GERGLPGEKG 

      1810       1820       1830       1840       1850       1860 
EXXTGSQGRG DKGKLGPQGE SRTGPPGSTG SRGPPGPPGR PGNSGIRGPP GPPGYCDSSQ 

      1870       1880       1890       1900       1910       1920 
CASIPYNGQG YPEPYVPEGG AYLPDREPFI VPVEPERTAE YEDDYGADEP EQQHPDHRRW 

      1930 
RRALRPGPGQ

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000051534.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000051534.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AABR06056005 Genomic DNA. No translation available.
AABR06056006 Genomic DNA. No translation available.
AABR06056007 Genomic DNA. No translation available.
IPIIPI00189714.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000051159; ENSRNOP00000051534; ENSRNOG00000010510.

Organism-specific databases

RGD2374. Col12a1.

Phylogenomic databases

GeneTreeENSGT00700000104243.
OMANTEYAVT.

Gene expression databases

ArrayExpressF1LQC3.

Family and domain databases

Gene3D2.60.120.200. 1 hit.
2.60.40.10. 18 hits.
InterProIPR008160. Collagen.
IPR008985. ConA-like_lec_gl_sf.
IPR013320. ConA-like_subgrp.
IPR003961. Fibronectin_type3.
IPR013783. Ig-like_fold.
IPR001791. Laminin_G.
IPR002035. VWF_A.
[Graphical view]
PfamPF01391. Collagen. 5 hits.
PF00041. fn3. 18 hits.
PF00092. VWA. 4 hits.
[Graphical view]
SMARTSM00060. FN3. 18 hits.
SM00210. TSPN. 1 hit.
SM00327. VWA. 4 hits.
[Graphical view]
SUPFAMSSF49899. ConA_like_lec_gl. 1 hit.
SSF49265. FN_III-like. 18 hits.
PROSITEPS50853. FN3. 18 hits.
PS50234. VWFA. 4 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio33819059.

Entry information

Entry nameF1LQC3_RAT
AccessionPrimary (citable) accession number: F1LQC3
Entry history
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: April 3, 2013
Last modified: May 1, 2013
This is version 21 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info