F1LN62 (F1LN62_RAT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Gephyrin Ensembl ENSRNOP00000062941

Gene names

Name:

Gphn Ensembl ENSRNOP00000062941

Organism

Rattus norvegicus (Rat) [Reference proteome] Ensembl ENSRNOP00000062941

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	628 AA.
Sequence status	Fragment.
Protein existence	Evidence at transcript level

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000062941

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	Mo-molybdopterin cofactor biosynthetic process Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	1	1	Ensembl ENSRNOP00000062941

Sequences

	Sequence		Length	Mass (Da)
	F1LN62 [UniParc]. Last modified April 3, 2013. Version 2. Checksum: 5C7A0FC963F5BF6B	FASTA	628	68,093
	10 20 30 40 50 60 LFRPVCGIRG KTLIINLPGS KKGSQECFQF ILPALPHAID LLRDAIVKVK EVHDELEDLP 70 80 90 100 110 120 SPPPPLSPPP TTSPHKQTED KGVQCEEEEE EKKDSGVAST EDSSSSHITA AALAAKIPDS 130 140 150 160 170 180 IISRGVQVLP RDTASLSTTP SESPRAQATS RLSTASCPTP KQIRRPDESK GVASRVGSLK 190 200 210 220 230 240 VQSRCSSKEN ILRASHSAVD ITKVARRHRM SPFPLTSMDK AFITVLEMTP VLGTEIINYR 250 260 270 280 290 300 DGMGRVLAQD VYAKDNLPPF PASVKDGYAV RAADGPGDRF IIGESQAGEQ PTQTVMPGQV 310 320 330 340 350 360 MRVTTGAPIP CGADAVVQVE DTELIRESDD GTEELEVRIL VQARPGQDIR PIGHDIKRGE 370 380 390 400 410 420 CVLAKGTHMG PSEIGLLATV GVTEVEVNKF PVVAVMSTGN ELLNPEDDLL PGKIRDSNRS 430 440 450 460 470 480 TLLATIQEHG YPTINLGIVG DNPDDLLNAL NEGISRADVI ITSGGVSMGE KDYLKQVLDI 490 500 510 520 530 540 DLHAQIHFGR VFMKPGLPTT FATLDIDGVR KIIFALPGNP VSAVVTCNLF VVPALRKMQG 550 560 570 580 590 600 ILDPRPTIIK ARLSCDVKLD PRPEYHRCIL TWHHQEPLPW AQSTGNQMSS RLMSMRSANG 610 620 LLMLPPKTEQ YVELHKGEVV DVMVIGRL

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Genome sequence of the Brown Norway rat yields insights into mammalian evolution." Rat Genome Sequencing Project Consortium Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S. Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Brown Norway Ensembl ENSRNOP00000062941.
[2]	Ensembl Submitted (JUL-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: Brown Norway Ensembl ENSRNOP00000062941.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AABR06045065 Genomic DNA. No translation available. AABR06045066 Genomic DNA. No translation available. AABR06045067 Genomic DNA. No translation available. AABR06045068 Genomic DNA. No translation available. AABR06045069 Genomic DNA. No translation available. AABR06045070 Genomic DNA. No translation available. AABR06045071 Genomic DNA. No translation available. AABR06045072 Genomic DNA. No translation available. AABR06045073 Genomic DNA. No translation available. AABR06045074 Genomic DNA. No translation available. AABR06045075 Genomic DNA. No translation available. AABR06045076 Genomic DNA. No translation available. AABR06045077 Genomic DNA. No translation available. AABR06045078 Genomic DNA. No translation available.
IPI	IPI00323990.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSRNOT00000068469; ENSRNOP00000062941; ENSRNOG00000028366.
Phylogenomic databases
GeneTree	ENSGT00390000016577.
Gene expression databases
ArrayExpress	F1LN62.
Family and domain databases
Gene3D	2.40.340.10. 1 hit. 3.40.980.10. 1 hit.
InterPro	IPR020817. Mo_cofactor_synthesis. IPR008284. MoCF_biosynth_CS. IPR005111. MoeA_C_domain_IV. IPR005110. MoeA_linker/N. IPR001453. Mopterin-bd_dom. [Graphical view]
Pfam	PF00994. MoCF_biosynth. 1 hit. PF03454. MoeA_C. 1 hit. PF03453. MoeA_N. 1 hit. [Graphical view]
SMART	SM00852. MoCF_biosynth. 1 hit. [Graphical view]
SUPFAM	SSF53218. MoCF_biosynth. 1 hit. SSF63867. MoeA_C. 1 hit. SSF63882. MoeA_N. 1 hit.
TIGRFAMs	TIGR00177. molyb_syn. 1 hit.
PROSITE	PS01079. MOCF_BIOSYNTHESIS_2. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	35575708.

Entry information

Entry name

F1LN62_RAT

Accession

Primary (citable) accession number: F1LN62

Entry history

Integrated into UniProtKB/TrEMBL:	May 3, 2011
Last sequence update:	April 3, 2013
Last modified:	May 1, 2013
This is version 16 of the entry and version 2 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)