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F1LMG4

- F1LMG4_RAT

UniProt

F1LMG4 - F1LMG4_RAT

Protein
Submitted name:

Phospholipase D1

Gene

Pld1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 28 (01 Oct 2014)
      Sequence version 2 (03 Apr 2013)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. catalytic activity Source: InterPro
    2. phosphatidylinositol binding Source: InterPro

    GO - Biological processi

    1. defense response to Gram-positive bacterium Source: Ensembl

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Phospholipase D1Imported
    Gene namesi
    Name:Pld1Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 2

    Organism-specific databases

    RGDi3349. Pld1.

    Subcellular locationi

    GO - Cellular componenti

    1. endosome Source: Ensembl
    2. Golgi apparatus Source: Ensembl
    3. lysosomal membrane Source: Ensembl

    PTM / Processingi

    Proteomic databases

    PRIDEiF1LMG4.

    Family & Domainsi

    Sequence similaritiesi

    Contains 1 PH domain.UniRule annotation

    Phylogenomic databases

    GeneTreeiENSGT00390000008356.
    KOiK01115.
    OMAiEYSIISQ.
    OrthoDBiEOG7N63KT.
    TreeFamiTF300589.

    Family and domain databases

    Gene3Di2.30.29.30. 1 hit.
    3.30.1520.10. 1 hit.
    InterProiIPR001849. PH_domain.
    IPR011993. PH_like_dom.
    IPR001683. Phox.
    IPR025202. PLD-like_dom.
    IPR001736. PLipase_D/transphosphatidylase.
    IPR016555. PLipase_D_euk.
    IPR015679. PLipase_D_fam.
    [Graphical view]
    PANTHERiPTHR18896. PTHR18896. 1 hit.
    PfamiPF00169. PH. 1 hit.
    PF00614. PLDc. 1 hit.
    PF13091. PLDc_2. 1 hit.
    PF00787. PX. 1 hit.
    [Graphical view]
    PIRSFiPIRSF009376. Phospholipase_D_euk. 1 hit.
    SMARTiSM00233. PH. 1 hit.
    SM00155. PLDc. 2 hits.
    SM00312. PX. 1 hit.
    [Graphical view]
    SUPFAMiSSF64268. SSF64268. 1 hit.
    PROSITEiPS50003. PH_DOMAIN. 1 hit.
    PS50035. PLD. 2 hits.
    PS50195. PX. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F1LMG4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSLKSEARVN TSTLQKIAAD MSNLIENLDT RELHFEGEEV EYDASPGDPT     50
    AQEACIPFSS IYNTQGFKEP NIQIYLSGCP VKAQVLEVER FTSTSRMPSV 100
    NLYTIELTHG EFTWQVKRKF KHFQEFHREL LKYKAFIRIP IPTKRHTFRR 150
    QNVKEEPREM PSLPRSSENA IQEEQFFGRR KQLEDYLTKI LKMPMYRNYH 200
    ATTEFLDVSQ LSFIHDLGPK GLEGMIMKRS GGHRIPGVNC CGHGRACYRW 250
    SKRWLIVKDS FLLYMKPDSG AIAFVLLVDK EFRIKVGKKE TETKYGLRID 300
    NLSRTLILKC NSYRHARWWG GAIEEFIQKH GTDFLKDHRF GSYAAVHENI 350
    LAKWYVNAKG YFEDIANAME GATEEIFITD WWLSPEIFLK RPVVEGNRWR 400
    LDCILKRKAQ QGVRIFIMLY KEVELALGIN SEYTKRTLMR LHPNIKVMRH 450
    PDHVSSSVYL WAHHEKLVII DQSVAFVGGI DLAYGRWDDN EHRLTDVGSV 500
    KRVTSGQSLG SLTAASVESM ESLSLKDKHQ SHKNEPVLKS VNDTDMKLKG 550
    IGKSRKFSKF SLYRQLHRRN LHNSDSISSV DSASSYFNHY RSHQNLIHGL 600
    KPHLKLFRPS SESEQGLTRH SADTGSIRSV QTGVGELHGE TRFWHGKDYC 650
    NFVFKDWVQL DKPFADFIDR YSTPRMPWHD IGSVVHGKAA RDVARHFIQR 700
    WNFTKIMKPK YRSLSYPFLL PKSQATAHEL RYQVPGAVHA KAQLLRSAAD 750
    WSAGIKHHEE SIHAAYTHVI ENSKHYIYIE NQFFISCADD KVVFNKVGNA 800
    IAQRILKAHR EGQRYRVYIV IPLLPGFEGD ISTGGGNALQ AIMHFNYRTM 850
    CRGESSILEQ LKPELGNKWI NYISFCGLRT HAELEGNLVT ELIYVHSKLL 900
    IADDNTVIIG SANINDRSML GKRDSEMAVI VQDTETVPSV MDGKEYQAGR 950
    FAQGLRLECF RLVLGYLSDP SEDIQDPVSD KFFKEIWVST AARNATIYDK 1000
    VFRCLPNDEV HNLIQLRDFI NKPILAKEDR LRAEEELRKI RGFLVQFPFY 1050
    FLSEENLLPS VGTKEAIVPM EVWT 1074
    Length:1,074
    Mass (Da):123,786
    Last modified:April 3, 2013 - v2
    Checksum:i17560B13BF580A87
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06015498 Genomic DNA. No translation available.
    AABR06015499 Genomic DNA. No translation available.
    AABR06015500 Genomic DNA. No translation available.
    RefSeqiXP_006232267.1. XM_006232205.1.
    XP_006232268.1. XM_006232206.1.
    UniGeneiRn.11130.

    Genome annotation databases

    EnsembliENSRNOT00000039296; ENSRNOP00000034466; ENSRNOG00000028156.
    GeneIDi25096.
    KEGGirno:25096.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06015498 Genomic DNA. No translation available.
    AABR06015499 Genomic DNA. No translation available.
    AABR06015500 Genomic DNA. No translation available.
    RefSeqi XP_006232267.1. XM_006232205.1.
    XP_006232268.1. XM_006232206.1.
    UniGenei Rn.11130.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi F1LMG4.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000039296 ; ENSRNOP00000034466 ; ENSRNOG00000028156 .
    GeneIDi 25096.
    KEGGi rno:25096.

    Organism-specific databases

    CTDi 5337.
    RGDi 3349. Pld1.

    Phylogenomic databases

    GeneTreei ENSGT00390000008356.
    KOi K01115.
    OMAi EYSIISQ.
    OrthoDBi EOG7N63KT.
    TreeFami TF300589.

    Miscellaneous databases

    NextBioi 35575495.

    Family and domain databases

    Gene3Di 2.30.29.30. 1 hit.
    3.30.1520.10. 1 hit.
    InterProi IPR001849. PH_domain.
    IPR011993. PH_like_dom.
    IPR001683. Phox.
    IPR025202. PLD-like_dom.
    IPR001736. PLipase_D/transphosphatidylase.
    IPR016555. PLipase_D_euk.
    IPR015679. PLipase_D_fam.
    [Graphical view ]
    PANTHERi PTHR18896. PTHR18896. 1 hit.
    Pfami PF00169. PH. 1 hit.
    PF00614. PLDc. 1 hit.
    PF13091. PLDc_2. 1 hit.
    PF00787. PX. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF009376. Phospholipase_D_euk. 1 hit.
    SMARTi SM00233. PH. 1 hit.
    SM00155. PLDc. 2 hits.
    SM00312. PX. 1 hit.
    [Graphical view ]
    SUPFAMi SSF64268. SSF64268. 1 hit.
    PROSITEi PS50003. PH_DOMAIN. 1 hit.
    PS50035. PLD. 2 hits.
    PS50195. PX. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiF1LMG4_RAT
    AccessioniPrimary (citable) accession number: F1LMG4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 3, 2011
    Last sequence update: April 3, 2013
    Last modified: October 1, 2014
    This is version 28 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3