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F1LM33

- F1LM33_RAT

UniProt

F1LM33 - F1LM33_RAT

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Protein
Submitted name:

Leucine-rich PPR motif-containing protein, mitochondrial

Gene
Lrpprc, rCG_61623
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. RNA binding Source: Ensembl
  2. single-stranded DNA binding Source: Ensembl

GO - Biological processi

  1. negative regulation of mitochondrial RNA catabolic process Source: Ensembl
  2. regulation of mitochondrial translation Source: Ensembl
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Leucine-rich PPR motif-containing protein, mitochondrialImported
Submitted name:
Leucine-rich PPR-motif containing, isoform CRA_bImported
Gene namesi
Name:LrpprcImported
ORF Names:rCG_61623Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 6

Organism-specific databases

RGDi1306575. Lrpprc.

Subcellular locationi

GO - Cellular componenti

  1. condensed nuclear chromosome Source: Ensembl
  2. microtubule Source: Ensembl
  3. mitochondrial nucleoid Source: Ensembl
  4. perinuclear region of cytoplasm Source: Ensembl
  5. ribonucleoprotein complex Source: Ensembl
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00390000016775.
OMAiWNKMQEE.
OrthoDBiEOG72JWG1.
TreeFamiTF323626.

Family and domain databases

Gene3Di1.25.40.10. 3 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical.
[Graphical view]
PfamiPF01535. PPR. 5 hits.
PF13812. PPR_3. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 2 hits.
PROSITEiPS51375. PPR. 11 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F1LM33-1 [UniParc]FASTAAdd to Basket

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MSALLRPARW LLGAAAVPRL PLSLRLPAGG PGRLPSVVRV AAAGGRPAAG     50
ELLSQARLYA IVAEKKDLPE EPAPVRRSGS QFDWALMRLD NSVRRTGRIT 100
KGLLQKVFES TCRSGSPGSN QALLLLRSCG SLLPELSLAE RTEFAHKIWD 150
KLQQLGTVYD VSHYNALLKV YLQNEYRFSP TDFLAKMEGA NIQPNRVTYQ 200
RLIAAYCSVG DIEGASKILG FMKTRDLPIT EAVFSALVTG HARAGDMENA 250
ENILTVMKQA GIEPGPDTYL ALLNAHAEKG DIDHVKQILE KVEKSDHYFM 300
DRDFLQIIVS FSKAGYPQYV SEILEKITYE RRSIPDAMNL ILLLVTEKLE 350
DTAFQVLLAL PLARDETSSS FGSFFLRHCV TMDTPAEKLI DYCKRLRDAK 400
VHSSSLQFTL HCALQANKTA LAKAVMEALR DEGFPIRTHY FWPLLVGHQK 450
TKNVQGIIDI LKIMKEMGVD PDQETYINYV FPCFGSVQSA RAALQENKCL 500
PKSTTFAQAE VRNEAINGNL QNILSFLESN ALPFSFNSLR GSLILGFRRS 550
MNIDLWSKIT ELLYKDDRYC QKPPGPTEAV GYFLYNLIDS MSDSEVQAKE 600
ERLRQYFHQL REMNVKVSEN IYKGICNLLD NYHVPELIKD VKVLVDREKI 650
DSRKTSQFTS SDLESTLEKL KAEGHPVGDP LKQLILLLCS EENMQKALEV 700
KAKYESDMVI GGYAALINLC CRHDNAEDAL NLKQEFDRLD PSAVLDTAKY 750
VALVKVLGKH GRVQDAINIL KEMKEKDVVI KDAAVLSFFH ILNGAALRGE 800
IETVKQLHEA IVTLGLAKPS SNISFPLVTV HLEKDDLPAA LEASIACHEK 850
YKVLPRIHDV LCKLIEKGET DLIQKAMDFV SQEQGEMSML YDLFFAFLQT 900
GNYKEAKKII ETPGIRARPT RLQWFCDRCI ANNQVETLEK LVELTEKLFE 950
CDRDQMYYNL LKLYKISGDW QRADAVWNKM QEENLIPRER TLRLLAGILK 1000
TSNQEVPFDV PELWFGDDRS SLSSSSPSAG DTVTEKMLLS DCRLKKSKDA 1050
YNIFLKAEKQ DVVFSSEAYS TLVGLLLSKD DFTRAMHVKD FAETHIKGFT 1100
LNGAASSLLI IAQVRRDYLK VALETLKAAL DLEQVPSELA VTRLIQALAL 1150
QGDVKSIETI QKMVKGLDAI ELSRMVFINN IALAQMKNNE IDAAIENIEH 1200
MLASENQTVE HQYFGLSYLF RKVIEEQMEP ALEKLSIMSE RLANQFALYK 1250
PVTDLFLQLV DSGKVDEARA LLERCGAIAE QTSILSVFCL RTSQKPKKAP 1300
VLKTLLELIP ELRENDRVYS CSMKSYVADK DVASAKALYE HLTAKNMKLD 1350
DLFLKRYASL LKDVGEPVPF TEPPESFGFY IKQLKEAREN PS 1392
Length:1,392
Mass (Da):156,680
Last modified:April 3, 2013 - v2
Checksum:i9B3586EB126D6EBF
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06041657 Genomic DNA. No translation available.
CH473947 Genomic DNA. Translation: EDM02690.1.
UniGeneiRn.92051.

Genome annotation databases

EnsembliENSRNOT00000008200; ENSRNOP00000008200; ENSRNOG00000005877.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06041657 Genomic DNA. No translation available.
CH473947 Genomic DNA. Translation: EDM02690.1 .
UniGenei Rn.92051.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000008200 ; ENSRNOP00000008200 ; ENSRNOG00000005877 .

Organism-specific databases

RGDi 1306575. Lrpprc.

Phylogenomic databases

GeneTreei ENSGT00390000016775.
OMAi WNKMQEE.
OrthoDBi EOG72JWG1.
TreeFami TF323626.

Miscellaneous databases

NextBioi 35575384.

Family and domain databases

Gene3Di 1.25.40.10. 3 hits.
InterProi IPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical.
[Graphical view ]
Pfami PF01535. PPR. 5 hits.
PF13812. PPR_3. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR00756. PPR. 2 hits.
PROSITEi PS51375. PPR. 11 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  4. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiF1LM33_RAT
AccessioniPrimary (citable) accession number: F1LM33
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: April 3, 2013
Last modified: February 19, 2014
This is version 22 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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