F1LM33 (F1LM33_RAT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Leucine-rich PPR motif-containing protein, mitochondrial Ensembl ENSRNOP00000008200

Submitted name:
Leucine-rich PPR-motif containing, isoform CRA_b EMBL EDM02690.1

Gene names

Name:	Lrpprc RGD 1306575 EMBL EDM02690.1 Ensembl ENSRNOP00000008200
ORF Names:	rCG_61623 EMBL EDM02690.1

Organism

Rattus norvegicus (Rat) [Reference proteome] Ensembl ENSRNOP00000008200

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	1392 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequences

	Sequence		Length	Mass (Da)
	F1LM33 [UniParc]. Last modified April 3, 2013. Version 2. Checksum: 9B3586EB126D6EBF	FASTA	1,392	156,680
	10 20 30 40 50 60 MSALLRPARW LLGAAAVPRL PLSLRLPAGG PGRLPSVVRV AAAGGRPAAG ELLSQARLYA 70 80 90 100 110 120 IVAEKKDLPE EPAPVRRSGS QFDWALMRLD NSVRRTGRIT KGLLQKVFES TCRSGSPGSN 130 140 150 160 170 180 QALLLLRSCG SLLPELSLAE RTEFAHKIWD KLQQLGTVYD VSHYNALLKV YLQNEYRFSP 190 200 210 220 230 240 TDFLAKMEGA NIQPNRVTYQ RLIAAYCSVG DIEGASKILG FMKTRDLPIT EAVFSALVTG 250 260 270 280 290 300 HARAGDMENA ENILTVMKQA GIEPGPDTYL ALLNAHAEKG DIDHVKQILE KVEKSDHYFM 310 320 330 340 350 360 DRDFLQIIVS FSKAGYPQYV SEILEKITYE RRSIPDAMNL ILLLVTEKLE DTAFQVLLAL 370 380 390 400 410 420 PLARDETSSS FGSFFLRHCV TMDTPAEKLI DYCKRLRDAK VHSSSLQFTL HCALQANKTA 430 440 450 460 470 480 LAKAVMEALR DEGFPIRTHY FWPLLVGHQK TKNVQGIIDI LKIMKEMGVD PDQETYINYV 490 500 510 520 530 540 FPCFGSVQSA RAALQENKCL PKSTTFAQAE VRNEAINGNL QNILSFLESN ALPFSFNSLR 550 560 570 580 590 600 GSLILGFRRS MNIDLWSKIT ELLYKDDRYC QKPPGPTEAV GYFLYNLIDS MSDSEVQAKE 610 620 630 640 650 660 ERLRQYFHQL REMNVKVSEN IYKGICNLLD NYHVPELIKD VKVLVDREKI DSRKTSQFTS 670 680 690 700 710 720 SDLESTLEKL KAEGHPVGDP LKQLILLLCS EENMQKALEV KAKYESDMVI GGYAALINLC 730 740 750 760 770 780 CRHDNAEDAL NLKQEFDRLD PSAVLDTAKY VALVKVLGKH GRVQDAINIL KEMKEKDVVI 790 800 810 820 830 840 KDAAVLSFFH ILNGAALRGE IETVKQLHEA IVTLGLAKPS SNISFPLVTV HLEKDDLPAA 850 860 870 880 890 900 LEASIACHEK YKVLPRIHDV LCKLIEKGET DLIQKAMDFV SQEQGEMSML YDLFFAFLQT 910 920 930 940 950 960 GNYKEAKKII ETPGIRARPT RLQWFCDRCI ANNQVETLEK LVELTEKLFE CDRDQMYYNL 970 980 990 1000 1010 1020 LKLYKISGDW QRADAVWNKM QEENLIPRER TLRLLAGILK TSNQEVPFDV PELWFGDDRS 1030 1040 1050 1060 1070 1080 SLSSSSPSAG DTVTEKMLLS DCRLKKSKDA YNIFLKAEKQ DVVFSSEAYS TLVGLLLSKD 1090 1100 1110 1120 1130 1140 DFTRAMHVKD FAETHIKGFT LNGAASSLLI IAQVRRDYLK VALETLKAAL DLEQVPSELA 1150 1160 1170 1180 1190 1200 VTRLIQALAL QGDVKSIETI QKMVKGLDAI ELSRMVFINN IALAQMKNNE IDAAIENIEH 1210 1220 1230 1240 1250 1260 MLASENQTVE HQYFGLSYLF RKVIEEQMEP ALEKLSIMSE RLANQFALYK PVTDLFLQLV 1270 1280 1290 1300 1310 1320 DSGKVDEARA LLERCGAIAE QTSILSVFCL RTSQKPKKAP VLKTLLELIP ELRENDRVYS 1330 1340 1350 1360 1370 1380 CSMKSYVADK DVASAKALYE HLTAKNMKLD DLFLKRYASL LKDVGEPVPF TEPPESFGFY 1390 IKQLKEAREN PS

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Genome sequence of the Brown Norway rat yields insights into mammalian evolution." Rat Genome Sequencing Project Consortium Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S. Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Brown Norway Ensembl ENSRNOP00000008200.
[2]	"Gene and alternative splicing annotation with AIR." Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M., Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z., Istrail S., Li P., Sutton G. Genome Res. 15:54-66(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: BN EMBL EDM02690.1.
[3]	Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M., Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L., Lu F. , Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F. Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: BN EMBL EDM02690.1.
[4]	Ensembl Submitted (JUL-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: Brown Norway Ensembl ENSRNOP00000008200.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AABR06041657 Genomic DNA. No translation available. CH473947 Genomic DNA. Translation: EDM02690.1.
IPI	IPI00360075.
UniGene	Rn.92051.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSRNOT00000008200; ENSRNOP00000008200; ENSRNOG00000005877.
Organism-specific databases
RGD	1306575. Lrpprc.
Phylogenomic databases
GeneTree	ENSGT00390000016775.
Family and domain databases
Gene3D	1.25.40.10. 3 hits.
InterPro	IPR002885. Pentatricopeptide_repeat. IPR011990. TPR-like_helical. [Graphical view]
Pfam	PF01535. PPR. 5 hits. PF13812. PPR_3. 1 hit. [Graphical view]
TIGRFAMs	TIGR00756. PPR. 2 hits.
PROSITE	PS51375. PPR. 11 hits. [Graphical view]
ProtoNet	Search...
Other
NextBio	35575384.

Entry information

Entry name

F1LM33_RAT

Accession

Primary (citable) accession number: F1LM33

Entry history

Integrated into UniProtKB/TrEMBL:	May 3, 2011
Last sequence update:	April 3, 2013
Last modified:	May 29, 2013
This is version 18 of the entry and version 2 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)