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F1LM33

- F1LM33_RAT

UniProt

F1LM33 - F1LM33_RAT

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Protein
Submitted name:

Leucine-rich PPR motif-containing protein, mitochondrial

Gene

Lrpprc

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. poly(A) RNA binding Source: Ensembl
  2. single-stranded DNA binding Source: Ensembl

GO - Biological processi

  1. negative regulation of mitochondrial RNA catabolic process Source: Ensembl
  2. regulation of mitochondrial translation Source: Ensembl
Complete GO annotation...

Enzyme and pathway databases

ReactomeiREACT_262146. Respiratory electron transport.
REACT_270861. Orphan transporters.

Names & Taxonomyi

Protein namesi
Submitted name:
Leucine-rich PPR motif-containing protein, mitochondrialImported
Submitted name:
Leucine-rich PPR-motif containing, isoform CRA_bImported
Gene namesi
Name:LrpprcImported
ORF Names:rCG_61623Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 6

Organism-specific databases

RGDi1306575. Lrpprc.

Subcellular locationi

GO - Cellular componenti

  1. condensed nuclear chromosome Source: Ensembl
  2. membrane Source: Ensembl
  3. microtubule Source: Ensembl
  4. mitochondrial nucleoid Source: Ensembl
  5. perinuclear region of cytoplasm Source: Ensembl
  6. ribonucleoprotein complex Source: Ensembl
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00390000016775.
OMAiWNKMQEE.
OrthoDBiEOG72JWG1.
TreeFamiTF323626.

Family and domain databases

Gene3Di1.25.40.10. 3 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 5 hits.
PF13812. PPR_3. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 2 hits.
PROSITEiPS51375. PPR. 11 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F1LM33-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSALLRPARW LLGAAAVPRL PLSLRLPAGG PGRLPSVVRV AAAGGRPAAG
60 70 80 90 100
ELLSQARLYA IVAEKKDLPE EPAPVRRSGS QFDWALMRLD NSVRRTGRIT
110 120 130 140 150
KGLLQKVFES TCRSGSPGSN QALLLLRSCG SLLPELSLAE RTEFAHKIWD
160 170 180 190 200
KLQQLGTVYD VSHYNALLKV YLQNEYRFSP TDFLAKMEGA NIQPNRVTYQ
210 220 230 240 250
RLIAAYCSVG DIEGASKILG FMKTRDLPIT EAVFSALVTG HARAGDMENA
260 270 280 290 300
ENILTVMKQA GIEPGPDTYL ALLNAHAEKG DIDHVKQILE KVEKSDHYFM
310 320 330 340 350
DRDFLQIIVS FSKAGYPQYV SEILEKITYE RRSIPDAMNL ILLLVTEKLE
360 370 380 390 400
DTAFQVLLAL PLARDETSSS FGSFFLRHCV TMDTPAEKLI DYCKRLRDAK
410 420 430 440 450
VHSSSLQFTL HCALQANKTA LAKAVMEALR DEGFPIRTHY FWPLLVGHQK
460 470 480 490 500
TKNVQGIIDI LKIMKEMGVD PDQETYINYV FPCFGSVQSA RAALQENKCL
510 520 530 540 550
PKSTTFAQAE VRNEAINGNL QNILSFLESN ALPFSFNSLR GSLILGFRRS
560 570 580 590 600
MNIDLWSKIT ELLYKDDRYC QKPPGPTEAV GYFLYNLIDS MSDSEVQAKE
610 620 630 640 650
ERLRQYFHQL REMNVKVSEN IYKGICNLLD NYHVPELIKD VKVLVDREKI
660 670 680 690 700
DSRKTSQFTS SDLESTLEKL KAEGHPVGDP LKQLILLLCS EENMQKALEV
710 720 730 740 750
KAKYESDMVI GGYAALINLC CRHDNAEDAL NLKQEFDRLD PSAVLDTAKY
760 770 780 790 800
VALVKVLGKH GRVQDAINIL KEMKEKDVVI KDAAVLSFFH ILNGAALRGE
810 820 830 840 850
IETVKQLHEA IVTLGLAKPS SNISFPLVTV HLEKDDLPAA LEASIACHEK
860 870 880 890 900
YKVLPRIHDV LCKLIEKGET DLIQKAMDFV SQEQGEMSML YDLFFAFLQT
910 920 930 940 950
GNYKEAKKII ETPGIRARPT RLQWFCDRCI ANNQVETLEK LVELTEKLFE
960 970 980 990 1000
CDRDQMYYNL LKLYKISGDW QRADAVWNKM QEENLIPRER TLRLLAGILK
1010 1020 1030 1040 1050
TSNQEVPFDV PELWFGDDRS SLSSSSPSAG DTVTEKMLLS DCRLKKSKDA
1060 1070 1080 1090 1100
YNIFLKAEKQ DVVFSSEAYS TLVGLLLSKD DFTRAMHVKD FAETHIKGFT
1110 1120 1130 1140 1150
LNGAASSLLI IAQVRRDYLK VALETLKAAL DLEQVPSELA VTRLIQALAL
1160 1170 1180 1190 1200
QGDVKSIETI QKMVKGLDAI ELSRMVFINN IALAQMKNNE IDAAIENIEH
1210 1220 1230 1240 1250
MLASENQTVE HQYFGLSYLF RKVIEEQMEP ALEKLSIMSE RLANQFALYK
1260 1270 1280 1290 1300
PVTDLFLQLV DSGKVDEARA LLERCGAIAE QTSILSVFCL RTSQKPKKAP
1310 1320 1330 1340 1350
VLKTLLELIP ELRENDRVYS CSMKSYVADK DVASAKALYE HLTAKNMKLD
1360 1370 1380 1390
DLFLKRYASL LKDVGEPVPF TEPPESFGFY IKQLKEAREN PS
Length:1,392
Mass (Da):156,680
Last modified:April 3, 2013 - v2
Checksum:i9B3586EB126D6EBF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06041657 Genomic DNA. No translation available.
CH473947 Genomic DNA. Translation: EDM02690.1.
UniGeneiRn.92051.

Genome annotation databases

EnsembliENSRNOT00000008200; ENSRNOP00000008200; ENSRNOG00000005877.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06041657 Genomic DNA. No translation available.
CH473947 Genomic DNA. Translation: EDM02690.1 .
UniGenei Rn.92051.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000008200 ; ENSRNOP00000008200 ; ENSRNOG00000005877 .

Organism-specific databases

RGDi 1306575. Lrpprc.

Phylogenomic databases

GeneTreei ENSGT00390000016775.
OMAi WNKMQEE.
OrthoDBi EOG72JWG1.
TreeFami TF323626.

Enzyme and pathway databases

Reactomei REACT_262146. Respiratory electron transport.
REACT_270861. Orphan transporters.

Miscellaneous databases

NextBioi 35575384.

Family and domain databases

Gene3Di 1.25.40.10. 3 hits.
InterProi IPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view ]
Pfami PF01535. PPR. 5 hits.
PF13812. PPR_3. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR00756. PPR. 2 hits.
PROSITEi PS51375. PPR. 11 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  4. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiF1LM33_RAT
AccessioniPrimary (citable) accession number: F1LM33
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: April 3, 2013
Last modified: November 26, 2014
This is version 25 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3