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Protein

Galectin

Gene
N/A
Organism
Ascaris suum (Pig roundworm) (Ascaris lumbricoides)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

LectinUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
GalectinUniRule annotation
OrganismiAscaris suum (Pig roundworm) (Ascaris lumbricoides)Imported
Taxonomic identifieri6253 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaAscarididaAscaridoideaAscarididaeAscaris

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4HL0X-ray2.00A/B1-278[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 2 galectin domains.UniRule annotation

Family and domain databases

Gene3Di2.60.120.200. 2 hits.
InterProiIPR013320. ConA-like_dom.
IPR001079. Galectin_CRD.
[Graphical view]
PfamiPF00337. Gal-bind_lectin. 2 hits.
[Graphical view]
SMARTiSM00908. Gal-bind_lectin. 2 hits.
SM00276. GLECT. 2 hits.
[Graphical view]
SUPFAMiSSF49899. SSF49899. 2 hits.
PROSITEiPS51304. GALECTIN. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F1KZZ8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATETSYPVP YRSKLTEPFE PGQTLIIKGK TAEDSVRFTI NLHNTSADFS
60 70 80 90 100
GNDVPLHISV RFDEGKIVFN TFSKGEWGKE ERKSNPYKKG DDIDIRIRAH
110 120 130 140 150
DSKFSISVDQ KEVKEYEHRV PLSSVTHFSV DGDILITYIH WGGKYYPVPY
160 170 180 190 200
ESGLAGDGLA PGKSLLIFAT PEKKGKRFHI NLLKKNGDIA LHFNPRFDEK
210 220 230 240 250
AIVRNSLISG EWGNEEREGK NPLEKGIGCD LEFRNEEYAF QIYVDGERFA
260 270
TYAHRLDPHD INGLQIGGDV EVTGIQMV
Length:278
Mass (Da):31,422
Last modified:May 3, 2011 - v1
Checksum:i192A0ED78667A695
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
JI168813 mRNA. Translation: ADY43452.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
JI168813 mRNA. Translation: ADY43452.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4HL0X-ray2.00A/B1-278[»]
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di2.60.120.200. 2 hits.
InterProiIPR013320. ConA-like_dom.
IPR001079. Galectin_CRD.
[Graphical view]
PfamiPF00337. Gal-bind_lectin. 2 hits.
[Graphical view]
SMARTiSM00908. Gal-bind_lectin. 2 hits.
SM00276. GLECT. 2 hits.
[Graphical view]
SUPFAMiSSF49899. SSF49899. 2 hits.
PROSITEiPS51304. GALECTIN. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles."
    Wang J., Czech B., Crunk A., Wallace A., Mitreva M., Hannon G.J., Davis R.E.
    Genome Res. 21:1462-1477(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  2. "Structure of full-length Toxascaris leonina galectin with two carbohydrate-recognition domains."
    Jeong M.S., Hwang H.G., Yu H.S., Jang S.B.
    Acta Crystallogr. D 69:168-175(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS).

Entry informationi

Entry nameiF1KZZ8_ASCSU
AccessioniPrimary (citable) accession number: F1KZZ8
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: January 7, 2015
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.