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F0T2I5

- F0T2I5_SYNGF

UniProt

F0T2I5 - F0T2I5_SYNGF

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Protein
Submitted name: ATP-dependent DNA ligase LigD polymerase moduleATP-dependent DNA ligase LigD phosphoesterase module
Gene
Sgly_0962
Organism
Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSGLY645991:GHJ4-987-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD polymerase moduleATP-dependent DNA ligase LigD phosphoesterase moduleImported
Gene namesi
Ordered Locus Names:Sgly_0962Imported
OrganismiSyntrophobotulus glycolicus (strain DSM 8271 / FlGlyR)Imported
Taxonomic identifieri645991 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptococcaceaeSyntrophobotulus
ProteomesiUP000007488: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF0T2I5.

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiDWTIRSI.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F0T2I5-1 [UniParc]FASTAAdd to Basket

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MDRKLNDYNE KRNFARTTEP EGAREMAREG LRFVVQHHLA RRDHYDFRLE    50
WDGALLSWAV PKGPSYNTRD KRLAVQVEDH PLEYRNFEGT IPKGEYGGGV 100
VMLWDEGYWE PDGNVDDGLR AGMLKFVLKG RRLKGKWALV RLKKKAGETK 150
DNWLLLKEKD QYAKTGDEVS QFATSIRTGR TMKEIEEGED EKITPNPFGS 200
TGVQLAKLVR MVPEGEDWLY ELKYDGYRIV AYMEGGSARL LTRNGRDYTA 250
RFPDVASSLS DWAGGRAMIL DGEMAVTDAA GRTDFQALQN YLNNAQAQSL 300
TYIIFDLLAL DGADLRGHRL LDRKGTLEAL LKDAPENLYY SRHVSGNGRE 350
SFAAACAAGL EGIIGKKADS LYSGTRNGDW IKLKCEQRQE FVIGGYTLSA 400
KKTSGVSSLL LGVYEGQGLV YAGRAGTGLS EAGRRELAEK FAGRERTEPP 450
FRLPPKARAN EKITWLEPEL VAEIKFAEWT KDDLLRQASF KGLRTDKKPE 500
EIKREKTDGE RQPPPSAKET ERAMEANTNS IMIEGIKITN PDKVIFTDPE 550
TTKGDVVRYY AQVAERMLPY VSRRVLSIVR CPKGIAQTCF YKKHPGPGSK 600
GIVTIPVTNS DGETEEYFYI ENTSGLIAEA QMGTLEFHTW GSRADELEKP 650
DLMVFDLDPD EGMDLSRVRQ GVRDMKDLLT ELSLRAYLKT SGGKGYHVVV 700
PLKPSVSWDR FYDFARRVAE VMEQKWPDRY TSNVRKAKRA GKIFIDWMRN 750
GRGATSIAPY SLRAREGTRV SMPIAWEELD TVAPDSVNMA EALRRIGGND 800
PWQGFFRNGQ QLK 813
Length:813
Mass (Da):91,729
Last modified:May 3, 2011 - v1
Checksum:i3C1CA60488E450A8
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002547 Genomic DNA. Translation: ADY55303.1.
RefSeqiWP_013624174.1. NC_015172.1.
YP_004265304.1. NC_015172.1.

Genome annotation databases

EnsemblBacteriaiADY55303; ADY55303; Sgly_0962.
GeneIDi10248142.
KEGGisgy:Sgly_0962.
PATRICi47032618. VBISynGly105927_1038.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002547 Genomic DNA. Translation: ADY55303.1 .
RefSeqi WP_013624174.1. NC_015172.1.
YP_004265304.1. NC_015172.1.

3D structure databases

ProteinModelPortali F0T2I5.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADY55303 ; ADY55303 ; Sgly_0962 .
GeneIDi 10248142.
KEGGi sgy:Sgly_0962.
PATRICi 47032618. VBISynGly105927_1038.

Phylogenomic databases

KOi K01971.
OMAi DWTIRSI.

Enzyme and pathway databases

BioCyci SGLY645991:GHJ4-987-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 8271 / FlGlyR.

Entry informationi

Entry nameiF0T2I5_SYNGF
AccessioniPrimary (citable) accession number: F0T2I5
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: September 3, 2014
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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