F0T2I5 (F0T2I5_SYNGF) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase LigD polymerase module;ATP-dependent DNA ligase LigD phosphoesterase module EMBL ADY55303.1

Gene names

Ordered Locus Names:

Sgly_0962

Organism

Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR) [Complete proteome] [HAMAP] EMBL ADY55303.1

Taxonomic identifier

645991 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Clostridia › Clostridiales › Peptococcaceae › Syntrophobotulus › Syntrophobotulus glycolicus

Protein attributes

Sequence length	813 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ADY55303.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F0T2I5 [UniParc]. Last modified May 3, 2011. Version 1. Checksum: 3C1CA60488E450A8	FASTA	813	91,729
	10 20 30 40 50 60 MDRKLNDYNE KRNFARTTEP EGAREMAREG LRFVVQHHLA RRDHYDFRLE WDGALLSWAV 70 80 90 100 110 120 PKGPSYNTRD KRLAVQVEDH PLEYRNFEGT IPKGEYGGGV VMLWDEGYWE PDGNVDDGLR 130 140 150 160 170 180 AGMLKFVLKG RRLKGKWALV RLKKKAGETK DNWLLLKEKD QYAKTGDEVS QFATSIRTGR 190 200 210 220 230 240 TMKEIEEGED EKITPNPFGS TGVQLAKLVR MVPEGEDWLY ELKYDGYRIV AYMEGGSARL 250 260 270 280 290 300 LTRNGRDYTA RFPDVASSLS DWAGGRAMIL DGEMAVTDAA GRTDFQALQN YLNNAQAQSL 310 320 330 340 350 360 TYIIFDLLAL DGADLRGHRL LDRKGTLEAL LKDAPENLYY SRHVSGNGRE SFAAACAAGL 370 380 390 400 410 420 EGIIGKKADS LYSGTRNGDW IKLKCEQRQE FVIGGYTLSA KKTSGVSSLL LGVYEGQGLV 430 440 450 460 470 480 YAGRAGTGLS EAGRRELAEK FAGRERTEPP FRLPPKARAN EKITWLEPEL VAEIKFAEWT 490 500 510 520 530 540 KDDLLRQASF KGLRTDKKPE EIKREKTDGE RQPPPSAKET ERAMEANTNS IMIEGIKITN 550 560 570 580 590 600 PDKVIFTDPE TTKGDVVRYY AQVAERMLPY VSRRVLSIVR CPKGIAQTCF YKKHPGPGSK 610 620 630 640 650 660 GIVTIPVTNS DGETEEYFYI ENTSGLIAEA QMGTLEFHTW GSRADELEKP DLMVFDLDPD 670 680 690 700 710 720 EGMDLSRVRQ GVRDMKDLLT ELSLRAYLKT SGGKGYHVVV PLKPSVSWDR FYDFARRVAE 730 740 750 760 770 780 VMEQKWPDRY TSNVRKAKRA GKIFIDWMRN GRGATSIAPY SLRAREGTRV SMPIAWEELD 790 800 810 TVAPDSVNMA EALRRIGGND PWQGFFRNGQ QLK

References

[1]

"The complete genome of Syntrophobotulus glycolicus DSM 8271." Lucas S., Copeland A., Lapidus A., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Pagani I., Ivanova N., Mikhailova N., Chertkov O., Held B., Detter J.C., Tapia R., Han C., Land M., Hauser L. , Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Spring S., Schroeder M., Brambilla E., Klenk H.-P., Eisen J.A. Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 8271 / FlGlyR.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002547 Genomic DNA. Translation: ADY55303.1.
RefSeq	YP_004265304.1. NC_015172.1.
3D structure databases
ProteinModelPortal	F0T2I5.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADY55303; ADY55303; Sgly_0962.
GeneID	10248142.
KEGG	sgy:Sgly_0962.
PATRIC	47032618. VBISynGly105927_1038.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Enzyme and pathway databases
BioCyc	SGLY645991:GHJ4-987-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F0T2I5_SYNGF

Accession

Primary (citable) accession number: F0T2I5

Entry history

Integrated into UniProtKB/TrEMBL:	May 3, 2011
Last sequence update:	May 3, 2011
Last modified:	April 3, 2013
This is version 13 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)