Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

ATP-dependent DNA ligase LigD polymerase moduleATP-dependent DNA ligase LigD phosphoesterase module

Gene

Sgly_0962

Organism
Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSGLY645991:GHJ4-987-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD polymerase moduleATP-dependent DNA ligase LigD phosphoesterase moduleImported
Gene namesi
Ordered Locus Names:Sgly_0962Imported
OrganismiSyntrophobotulus glycolicus (strain DSM 8271 / FlGlyR)Imported
Taxonomic identifieri645991 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptococcaceaeSyntrophobotulus
ProteomesiUP000007488: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF0T2I5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiHPLDYAD.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F0T2I5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDRKLNDYNE KRNFARTTEP EGAREMAREG LRFVVQHHLA RRDHYDFRLE
60 70 80 90 100
WDGALLSWAV PKGPSYNTRD KRLAVQVEDH PLEYRNFEGT IPKGEYGGGV
110 120 130 140 150
VMLWDEGYWE PDGNVDDGLR AGMLKFVLKG RRLKGKWALV RLKKKAGETK
160 170 180 190 200
DNWLLLKEKD QYAKTGDEVS QFATSIRTGR TMKEIEEGED EKITPNPFGS
210 220 230 240 250
TGVQLAKLVR MVPEGEDWLY ELKYDGYRIV AYMEGGSARL LTRNGRDYTA
260 270 280 290 300
RFPDVASSLS DWAGGRAMIL DGEMAVTDAA GRTDFQALQN YLNNAQAQSL
310 320 330 340 350
TYIIFDLLAL DGADLRGHRL LDRKGTLEAL LKDAPENLYY SRHVSGNGRE
360 370 380 390 400
SFAAACAAGL EGIIGKKADS LYSGTRNGDW IKLKCEQRQE FVIGGYTLSA
410 420 430 440 450
KKTSGVSSLL LGVYEGQGLV YAGRAGTGLS EAGRRELAEK FAGRERTEPP
460 470 480 490 500
FRLPPKARAN EKITWLEPEL VAEIKFAEWT KDDLLRQASF KGLRTDKKPE
510 520 530 540 550
EIKREKTDGE RQPPPSAKET ERAMEANTNS IMIEGIKITN PDKVIFTDPE
560 570 580 590 600
TTKGDVVRYY AQVAERMLPY VSRRVLSIVR CPKGIAQTCF YKKHPGPGSK
610 620 630 640 650
GIVTIPVTNS DGETEEYFYI ENTSGLIAEA QMGTLEFHTW GSRADELEKP
660 670 680 690 700
DLMVFDLDPD EGMDLSRVRQ GVRDMKDLLT ELSLRAYLKT SGGKGYHVVV
710 720 730 740 750
PLKPSVSWDR FYDFARRVAE VMEQKWPDRY TSNVRKAKRA GKIFIDWMRN
760 770 780 790 800
GRGATSIAPY SLRAREGTRV SMPIAWEELD TVAPDSVNMA EALRRIGGND
810
PWQGFFRNGQ QLK
Length:813
Mass (Da):91,729
Last modified:May 3, 2011 - v1
Checksum:i3C1CA60488E450A8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002547 Genomic DNA. Translation: ADY55303.1.
RefSeqiYP_004265304.1. NC_015172.1.

Genome annotation databases

EnsemblBacteriaiADY55303; ADY55303; Sgly_0962.
GeneIDi10248142.
KEGGisgy:Sgly_0962.
PATRICi47032618. VBISynGly105927_1038.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002547 Genomic DNA. Translation: ADY55303.1.
RefSeqiYP_004265304.1. NC_015172.1.

3D structure databases

ProteinModelPortaliF0T2I5.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADY55303; ADY55303; Sgly_0962.
GeneIDi10248142.
KEGGisgy:Sgly_0962.
PATRICi47032618. VBISynGly105927_1038.

Phylogenomic databases

KOiK01971.
OMAiHPLDYAD.

Enzyme and pathway databases

BioCyciSGLY645991:GHJ4-987-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 8271 / FlGlyRImported.

Entry informationi

Entry nameiF0T2I5_SYNGF
AccessioniPrimary (citable) accession number: F0T2I5
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: March 4, 2015
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.