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F0T2I5

- F0T2I5_SYNGF

UniProt

F0T2I5 - F0T2I5_SYNGF

Protein
Submitted name:

ATP-dependent DNA ligase LigD polymerase moduleATP-dependent DNA ligase LigD phosphoesterase module

Gene

Sgly_0962

Organism
Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 20 (01 Oct 2014)
      Sequence version 1 (03 May 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciSGLY645991:GHJ4-987-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligase LigD polymerase moduleATP-dependent DNA ligase LigD phosphoesterase moduleImported
    Gene namesi
    Ordered Locus Names:Sgly_0962Imported
    OrganismiSyntrophobotulus glycolicus (strain DSM 8271 / FlGlyR)Imported
    Taxonomic identifieri645991 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptococcaceaeSyntrophobotulus
    ProteomesiUP000007488: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliF0T2I5.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.
    OMAiDWTIRSI.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F0T2I5-1 [UniParc]FASTAAdd to Basket

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    MDRKLNDYNE KRNFARTTEP EGAREMAREG LRFVVQHHLA RRDHYDFRLE    50
    WDGALLSWAV PKGPSYNTRD KRLAVQVEDH PLEYRNFEGT IPKGEYGGGV 100
    VMLWDEGYWE PDGNVDDGLR AGMLKFVLKG RRLKGKWALV RLKKKAGETK 150
    DNWLLLKEKD QYAKTGDEVS QFATSIRTGR TMKEIEEGED EKITPNPFGS 200
    TGVQLAKLVR MVPEGEDWLY ELKYDGYRIV AYMEGGSARL LTRNGRDYTA 250
    RFPDVASSLS DWAGGRAMIL DGEMAVTDAA GRTDFQALQN YLNNAQAQSL 300
    TYIIFDLLAL DGADLRGHRL LDRKGTLEAL LKDAPENLYY SRHVSGNGRE 350
    SFAAACAAGL EGIIGKKADS LYSGTRNGDW IKLKCEQRQE FVIGGYTLSA 400
    KKTSGVSSLL LGVYEGQGLV YAGRAGTGLS EAGRRELAEK FAGRERTEPP 450
    FRLPPKARAN EKITWLEPEL VAEIKFAEWT KDDLLRQASF KGLRTDKKPE 500
    EIKREKTDGE RQPPPSAKET ERAMEANTNS IMIEGIKITN PDKVIFTDPE 550
    TTKGDVVRYY AQVAERMLPY VSRRVLSIVR CPKGIAQTCF YKKHPGPGSK 600
    GIVTIPVTNS DGETEEYFYI ENTSGLIAEA QMGTLEFHTW GSRADELEKP 650
    DLMVFDLDPD EGMDLSRVRQ GVRDMKDLLT ELSLRAYLKT SGGKGYHVVV 700
    PLKPSVSWDR FYDFARRVAE VMEQKWPDRY TSNVRKAKRA GKIFIDWMRN 750
    GRGATSIAPY SLRAREGTRV SMPIAWEELD TVAPDSVNMA EALRRIGGND 800
    PWQGFFRNGQ QLK 813
    Length:813
    Mass (Da):91,729
    Last modified:May 3, 2011 - v1
    Checksum:i3C1CA60488E450A8
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002547 Genomic DNA. Translation: ADY55303.1.
    RefSeqiWP_013624174.1. NC_015172.1.
    YP_004265304.1. NC_015172.1.

    Genome annotation databases

    EnsemblBacteriaiADY55303; ADY55303; Sgly_0962.
    GeneIDi10248142.
    KEGGisgy:Sgly_0962.
    PATRICi47032618. VBISynGly105927_1038.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002547 Genomic DNA. Translation: ADY55303.1 .
    RefSeqi WP_013624174.1. NC_015172.1.
    YP_004265304.1. NC_015172.1.

    3D structure databases

    ProteinModelPortali F0T2I5.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADY55303 ; ADY55303 ; Sgly_0962 .
    GeneIDi 10248142.
    KEGGi sgy:Sgly_0962.
    PATRICi 47032618. VBISynGly105927_1038.

    Phylogenomic databases

    KOi K01971.
    OMAi DWTIRSI.

    Enzyme and pathway databases

    BioCyci SGLY645991:GHJ4-987-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 8271 / FlGlyRImported.

    Entry informationi

    Entry nameiF0T2I5_SYNGF
    AccessioniPrimary (citable) accession number: F0T2I5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 3, 2011
    Last sequence update: May 3, 2011
    Last modified: October 1, 2014
    This is version 20 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3