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F0SQ31 (F0SQ31_PLABD) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length546 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
F0SQ31 [UniParc].

Last modified May 3, 2011. Version 1.
Checksum: DBA2733AD23EFC26

FASTA54662,521
        10         20         30         40         50         60 
MKRFCELFRE LDGTTKTSRR HSALQDYFRE APANDAAWAT YILSGRRLKR LVKHGDLRAW 

        70         80         90        100        110        120 
GAELAELPDW LFEECYHMAG DLAETIALVI HEDRSRPVEG SLTHWMEEVV APLGEKSPEE 

       130        140        150        160        170        180 
QRTTLQHSWS QLDAWSRFVF NKLITGGLRI GVSQRSVVKA LAATFEIEPN VIAHRLMGPW 

       190        200        210        220        230        240 
EPTAEFFEQL VSEDAGEADL SQPYPFCLAH PFDAEPESLG AVEDWLADWK WDGIRAQAIR 

       250        260        270        280        290        300 
RGQAWFLWSR GEELLNERFP DFDDDLRSLP PGTVLDGELV GWKDGQVLPF GELQKRIARK 

       310        320        330        340        350        360 
RIGPKILRDV PVKFIAFDVL EHQGQDIRDT PMRQRRDTLE RLLVNRDEDS RLMISPAIEA 

       370        380        390        400        410        420 
ANWEEMASLR EQSRELGVEG IMLKHTESAY QTGRVSGSWW KWKIAPYTID AVLIYAQAGH 

       430        440        450        460        470        480 
GRRASLYTDY TFALWDGDTL VPFAKAYSGL TDAEIRKVDK FIRSNTQERF GPVRSVKAEL 

       490        500        510        520        530        540 
VFELAFENIQ ESTRHKSGVA VRFPRIHRWR QDKPPEQANT LQELKAMMPA QRLPLLEETP 


SAGGSE 

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References

[1]"The complete genome of Planctomyces brasiliensis DSM 5305."
Lucas S., Copeland A., Lapidus A., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Pagani I., Ivanova N., Ovchinnikova G., Lu M., Detter J.C., Han C., Land M., Hauser L., Markowitz V., Cheng J.-F. expand/collapse author list , Hugenholtz P., Woyke T., Wu D., Tindall B., Pomrenke H.G., Brambilla E., Klenk H.-P., Eisen J.A.
Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002546 Genomic DNA. Translation: ADY61208.1.
RefSeqYP_004271230.1. NC_015174.1.

3D structure databases

ProteinModelPortalF0SQ31.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADY61208; ADY61208; Plabr_3611.
GeneID10241031.
KEGGpbs:Plabr_3611.
PATRIC47016550. VBIPlaBra152897_3886.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycPBRA756272:GH5Q-3653-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF0SQ31_PLABD
AccessionPrimary (citable) accession number: F0SQ31
Entry history
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: October 16, 2013
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)