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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Plabr_3611

Organism
Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPBRA756272:GH5Q-3653-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Plabr_3611Imported
OrganismiPlanctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448)Imported
Taxonomic identifieri756272 [NCBI]
Taxonomic lineageiBacteriaPlanctomycetesPlanctomycetiaPlanctomycetalesPlanctomycetaceaePlanctomyces
ProteomesiUP000006860 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF0SQ31.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK10747.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F0SQ31-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRFCELFRE LDGTTKTSRR HSALQDYFRE APANDAAWAT YILSGRRLKR
60 70 80 90 100
LVKHGDLRAW GAELAELPDW LFEECYHMAG DLAETIALVI HEDRSRPVEG
110 120 130 140 150
SLTHWMEEVV APLGEKSPEE QRTTLQHSWS QLDAWSRFVF NKLITGGLRI
160 170 180 190 200
GVSQRSVVKA LAATFEIEPN VIAHRLMGPW EPTAEFFEQL VSEDAGEADL
210 220 230 240 250
SQPYPFCLAH PFDAEPESLG AVEDWLADWK WDGIRAQAIR RGQAWFLWSR
260 270 280 290 300
GEELLNERFP DFDDDLRSLP PGTVLDGELV GWKDGQVLPF GELQKRIARK
310 320 330 340 350
RIGPKILRDV PVKFIAFDVL EHQGQDIRDT PMRQRRDTLE RLLVNRDEDS
360 370 380 390 400
RLMISPAIEA ANWEEMASLR EQSRELGVEG IMLKHTESAY QTGRVSGSWW
410 420 430 440 450
KWKIAPYTID AVLIYAQAGH GRRASLYTDY TFALWDGDTL VPFAKAYSGL
460 470 480 490 500
TDAEIRKVDK FIRSNTQERF GPVRSVKAEL VFELAFENIQ ESTRHKSGVA
510 520 530 540
VRFPRIHRWR QDKPPEQANT LQELKAMMPA QRLPLLEETP SAGGSE
Length:546
Mass (Da):62,521
Last modified:May 3, 2011 - v1
Checksum:iDBA2733AD23EFC26
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002546 Genomic DNA. Translation: ADY61208.1.
RefSeqiYP_004271230.1. NC_015174.1.

Genome annotation databases

EnsemblBacteriaiADY61208; ADY61208; Plabr_3611.
KEGGipbs:Plabr_3611.
PATRICi47016550. VBIPlaBra152897_3886.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002546 Genomic DNA. Translation: ADY61208.1.
RefSeqiYP_004271230.1. NC_015174.1.

3D structure databases

ProteinModelPortaliF0SQ31.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADY61208; ADY61208; Plabr_3611.
KEGGipbs:Plabr_3611.
PATRICi47016550. VBIPlaBra152897_3886.

Phylogenomic databases

KOiK10747.

Enzyme and pathway databases

BioCyciPBRA756272:GH5Q-3653-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448Imported.

Entry informationi

Entry nameiF0SQ31_PLABD
AccessioniPrimary (citable) accession number: F0SQ31
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: April 1, 2015
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.