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F0SKL7 (F0SKL7_PLABD) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length436 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

D-xylopyranose = D-xylulose. HAMAP-Rule MF_00455 RuleBase RU000609 SAAS SAAS001998

Cofactor

Binds 2 magnesium ions per subunit By similarity. HAMAP-Rule MF_00455

Subunit structure

Homotetramer By similarity. HAMAP-Rule MF_00455 RuleBase RU000610 SAAS SAAS001998

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00455 RuleBase RU000610 SAAS SAAS001998.

Sequence similarities

Belongs to the xylose isomerase family. HAMAP-Rule MF_00455 RuleBase RU000609

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1001 By similarity HAMAP-Rule MF_00455
Active site1031 By similarity HAMAP-Rule MF_00455
Metal binding2311Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding2671Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding2671Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding2701Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding2951Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding3061Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3081Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3381Magnesium 1 By similarity HAMAP-Rule MF_00455

Sequences

Sequence LengthMass (Da)Tools
F0SKL7 [UniParc].

Last modified May 3, 2011. Version 1.
Checksum: C7F5DE914979E787

FASTA43649,032
        10         20         30         40         50         60 
MSYFPDVPTI PFEGPESRNP LAFRYYNPDE MIEGQSMRDL LRFSVCYWHT FRGTGGDPFG 

        70         80         90        100        110        120 
PGTAVRPWED GTDSVDMAVK RVDVAFEFIS KLGVDFYCFH DRDVSPEGSS LKETNGNLDR 

       130        140        150        160        170        180 
VVARLKEKQE ETGIKLLWGT ANLFSNPRFM HGAATSCNAD VFAYAAAQVK KALEVTKELG 

       190        200        210        220        230        240 
GQNYVFWGGR EGYQNLFNTD MKRELDHLAR FMHMAKDYAK SIGFDGQFLF EPKPKEPTKH 

       250        260        270        280        290        300 
QYDFDVAACV NFLRQYGLED TVKMNIETNH ATLAGHSMMH EMEYARIQDM LGSIDANTGD 

       310        320        330        340        350        360 
LLLGWDTDQF PTDIYLTTQC MLVILKQGGL KPGGINFDAK VRRESFDPTD LFYAHIGGMD 

       370        380        390        400        410        420 
AFARGAKIAA AIRADGVLDD FVKDRYSSYD SGVGQEIEDG SANFESLSKY MLDKGEADAN 

       430 
TSGRQEYLEN IINLYV 

« Hide

References

[1]"The complete genome of Planctomyces brasiliensis DSM 5305."
Lucas S., Copeland A., Lapidus A., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Pagani I., Ivanova N., Ovchinnikova G., Lu M., Detter J.C., Han C., Land M., Hauser L., Markowitz V., Cheng J.-F. expand/collapse author list , Hugenholtz P., Woyke T., Wu D., Tindall B., Pomrenke H.G., Brambilla E., Klenk H.-P., Eisen J.A.
Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002546 Genomic DNA. Translation: ADY57635.1.
RefSeqYP_004267657.1. NC_015174.1.

3D structure databases

ProteinModelPortalF0SKL7.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADY57635; ADY57635; Plabr_0003.
GeneID10237381.
KEGGpbs:Plabr_0003.
PATRIC47008697. VBIPlaBra152897_0004.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01805.

Enzyme and pathway databases

BioCycPBRA756272:GH5Q-3-MONOMER.

Family and domain databases

Gene3D3.20.20.150. 1 hit.
HAMAPMF_00455. Xylose_isom_A.
InterProIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSPR00688. XYLOSISMRASE.
SUPFAMSSF51658. SSF51658. 1 hit.
TIGRFAMsTIGR02630. xylose_isom_A. 1 hit.
PROSITEPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF0SKL7_PLABD
AccessionPrimary (citable) accession number: F0SKL7
Entry history
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: June 11, 2014
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)